Rorug04G0279700

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000004
OG0016536
Physical Location & Seq
Forward (+)
45247568 .. 45249089
1522 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug04G0279700.1

Sequence Viewer

Length: 1113 bp
ATGGCTATGGCTACTATATTTCTTCCATTCACGACTAGCATCATGTTTCTTTTGGGACTTCTGGTGGCAATCCTTTCTATACCAGGCGCACAATCATCAGTAGGTGTTTGTTATGGAATGATGGGCAACAATCTCCCTTCCCACTCGGAAGTCATATCTCTTTACAAATCAAACAAGATCAACCGGATGAGACTCTACGACCCAAACCACGGTGCTCTTGAAGCTCTCCGAGGCTCCAACATCGAACTCATCCTCGGTGTTCCAAACTCGCTCCTTCAGGACTTCGCTAAAAACCCCTCCAATGCCCAAAATTGGGTAAAAACAAATGTCCTCAACTTCTACCCTAGCGTCAGAATCAAGTACATTGCCGTTGGAAATGAAGTAAGCCCCGTTAACGGAGACACATCTCTGGCTCAGTTCCTCCTCCCCGCCATGCAGCACGTGTACCAGGCAGTCAGAGCAGCCAACCTACATGACCGAATCAAGGTCTCAACCGCCATCGACACGACCTTAATAGGAGTCTCTTACCCTCCATCCCAAGGAGCATTTCGTGGTGACGTGAGAGGCTATCTGGACCCAATTATCGGCTACTTGGTTTATGCTAAAGCACCACTGCTTGCTAACATATACACATATTTTAGTTATGTTGGGAACCCTAGAGACATCTCTCTTCCTTACGCCTTGTTCACTTCGCCTTCGGTTGTTGCTTGGGATGGTAATAAAGGATACCAAAACCTGTTTGATGCGATGCTGGATGCTTTGTACTCGGCTCTTGAGAGAGCATGGGGTGGTTCTTTGGAGGTTGTTGTGTCCGAAAGCGGGTGGCCTTCGGCAGGTGGCTTTGGAACGTCTCCTGAGAATGCTCGGACTTATTACTCCAAATTGATTCAGCATGTGAAAGGGGGCACCCCAAAGAGGCCTGGTAGGGCCATAGAGACTTACTTGTTTGCCATGTTTGATGAGAACCAGAAAAACCCAGAGCTGGAGAAACACTTTGGGGTTTTCTACCCTAATAAACAGTCAAAGTATCACCTCAGTTTCGGGGGAGGAAGACTAGAAACTAGTACTTCTGCTGAGTATAATGTTACTAGTTCCCTCAAGAGTGATATGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF1645

Protein Analysis

370

Amino Acids

40.6

Weight (kDa)

8.67

Isoelectric Point (pI)

36.25

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Glyco_hydro_17 PF00332 34 - 347 3.4e-116 Glycosyl hydrolases family 17
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0016536)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G68330
fragaria_vesca FvH4_4g27060
malus_domestica MD13G1039600.v1.1 MD16G1040500.v1.1
prunus_persica Prupe.1G313600_v2.0.a1
rosa_chinensis RchiOBHm_Chr4g0434861
rosa_laevigata RLG00000006640
rosa_multiflora Rmu_sc0003726.1_g000002
rosa_roxburghii Rroxscaffold_5G00376070
rosa_rugosa Rorug04G0279700
rosa_samantha Rh4AG335500 Rh4BG344000 Rh4DG338000
rosa_wichuraiana Rw4G029270

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 824
Acc36I ACCTGC 1 cut(s) 824
AccB1I GGYRCC 1 cut(s) 905
AciI CCGC 3 cut(s) 429, 495, 819
AcuI CTGAAG 1 cut(s) 260
AcvI CACGTG 1 cut(s) 442
AfaI GTAC 4 cut(s) 362, 446, 764, 1066
AflIII ACRYGT 1 cut(s) 441
AgsI TTSAA 1 cut(s) 221
AhlI ACTAGT 2 cut(s) 1061, 1088
AjiI CACGTC 1 cut(s) 559
AjnI CCWGG 3 cut(s) 82, 447, 919
AjuI GAANNNNNNNTTGG 2 cut(s) 531, 563
AluBI AGCT 2 cut(s) 224, 982
AluI AGCT 2 cut(s) 224, 982
Alw21I GWGCWC 1 cut(s) 217
Alw26I GTCTC 7 cut(s) 184, 393, 493, 526, 654, 855, 929
AoxI GGCC 3 cut(s) 824, 917, 927
ApeKI GCWGC 2 cut(s) 436, 461
AspLEI GCGC 1 cut(s) 89
AspS9I GGNCC 2 cut(s) 574, 927
AsuHPI GGTGA 2 cut(s) 566, 1022
AvaII GGWCC 1 cut(s) 574
BaeGI GKGCMC 1 cut(s) 908
BanI GGYRCC 1 cut(s) 905
BbrPI CACGTG 1 cut(s) 442
BbsI GAAGAC 1 cut(s) 1057
Bbv12I GWGCWC 1 cut(s) 217
BbvI GCAGC 2 cut(s) 448, 473
BccI CCATC 4 cut(s) 115, 506, 541, 707
BceAI ACGGC 1 cut(s) 353
BciT130I CCWGG 3 cut(s) 84, 449, 921
BciVI GTATCC 1 cut(s) 719
BcoDI GTCTC 7 cut(s) 184, 393, 493, 526, 654, 855, 929
BcuI ACTAGT 2 cut(s) 1061, 1088
BfaI CTAG 6 cut(s) 36, 345, 657, 1055, 1062, 1089
BfuAI ACCTGC 1 cut(s) 824
BfuI GTATCC 1 cut(s) 719
BisI GCNGC 2 cut(s) 437, 462
BlsI GCNGC 2 cut(s) 438, 463
BmcAI AGTACT 1 cut(s) 1066
Bme1390I CCNGG 3 cut(s) 84, 449, 921
Bme18I GGWCC 1 cut(s) 574
BmgBI CACGTC 1 cut(s) 559
BmgT120I GGNCC 2 cut(s) 574, 927
BmiI GGNNCC 4 cut(s) 235, 576, 653, 907
BmrFI CCNGG 3 cut(s) 84, 449, 921
BmsI GCATC 4 cut(s) 48, 733, 738, 745
BpiI GAAGAC 1 cut(s) 1057
BpmI CTGGAG 1 cut(s) 1004
BpuEI CTTGAG 2 cut(s) 794, 1082
BsaAI YACGTR 1 cut(s) 442
BsaI GGTCTC 1 cut(s) 493
BsaJI CCNNGG 4 cut(s) 208, 229, 253, 538
BsaWI WCCGGW 1 cut(s) 183
Bse3DI GCAATG 1 cut(s) 363
BseBI CCWGG 3 cut(s) 84, 449, 921
BseDI CCNNGG 4 cut(s) 208, 229, 253, 538
BseGI GGATG 5 cut(s) 192, 249, 533, 718, 760
BseMI GCAATG 1 cut(s) 363
BseMII CTCAG 4 cut(s) 428, 846, 1048, 1065
BseRI GAGGAG 1 cut(s) 413
BseSI GKGCMC 1 cut(s) 908
BseXI GCAGC 2 cut(s) 448, 473
BshFI GGCC 3 cut(s) 826, 919, 929
BshNI GGYRCC 1 cut(s) 905
BsiHKAI GWGCWC 1 cut(s) 217
BsiSI CCGG 1 cut(s) 184
BslFI GGGAC 1 cut(s) 69
BsmAI GTCTC 7 cut(s) 184, 393, 493, 526, 654, 855, 929
BsmBI CGTCTC 1 cut(s) 855
BsmFI GGGAC 1 cut(s) 69
BsmI GAATGC 1 cut(s) 865
BsnI GGCC 3 cut(s) 826, 919, 929
Bso31I GGTCTC 1 cut(s) 493
Bsp1286I GDGCHC 2 cut(s) 217, 908
Bsp143I GATC 1 cut(s) 177
BspACI CCGC 3 cut(s) 429, 495, 819
BspANI GGCC 3 cut(s) 826, 919, 929
BspCNI CTCAG 4 cut(s) 427, 847, 1047, 1066
BspLI GGNNCC 4 cut(s) 235, 576, 653, 907
BspMI ACCTGC 1 cut(s) 824
BspT107I GGYRCC 1 cut(s) 905
BspTNI GGTCTC 1 cut(s) 493
BsrDI GCAATG 1 cut(s) 363
BssECI CCNNGG 4 cut(s) 208, 229, 253, 538
BssMI GATC 1 cut(s) 177
BssT1I CCWWGG 1 cut(s) 538
Bst2UI CCWGG 3 cut(s) 84, 449, 921
Bst4CI ACNGT 2 cut(s) 212, 1020
Bst6I CTCTTC 1 cut(s) 675
BstBAI YACGTR 1 cut(s) 442
BstC8I GCNNGC 1 cut(s) 618
BstDEI CTNAG 4 cut(s) 414, 855, 1034, 1074
BstDSI CCRYGG 1 cut(s) 208
BstENI CCTNNNNNAGG 1 cut(s) 831
BstF5I GGATG 5 cut(s) 192, 249, 533, 718, 760
BstHHI GCGC 1 cut(s) 89
BstKTI GATC 1 cut(s) 180
BstMAI GTCTC 7 cut(s) 184, 393, 493, 526, 654, 855, 929
BstMBI GATC 1 cut(s) 177
BstMWI GCNNNNNNNGC 2 cut(s) 221, 458
BstNI CCWGG 3 cut(s) 84, 449, 921
BstNSI RCATGY 1 cut(s) 896
BstSCI CCNGG 3 cut(s) 82, 447, 919
BstSLI GKGCMC 1 cut(s) 908
BstV1I GCAGC 2 cut(s) 448, 473
BstV2I GAAGAC 1 cut(s) 1057
BsuI GTATCC 1 cut(s) 719
BsuRI GGCC 3 cut(s) 826, 919, 929
BtgI CCRYGG 1 cut(s) 208
BtgZI GCGATG 1 cut(s) 761
BtrI CACGTC 1 cut(s) 559
BtsCI GGATG 5 cut(s) 192, 249, 533, 718, 760
BtsI GCAGTG 1 cut(s) 611
BtsIMutI CAGTG 1 cut(s) 611
BveI ACCTGC 1 cut(s) 824
Cac8I GCNNGC 1 cut(s) 618
CfoI GCGC 1 cut(s) 89
Cfr13I GGNCC 2 cut(s) 574, 927
CseI GACGC 1 cut(s) 337
Csp6I GTAC 4 cut(s) 361, 445, 763, 1065
CviAII CATG 6 cut(s) 43, 433, 473, 783, 893, 952
CviQI GTAC 4 cut(s) 361, 445, 763, 1065
DdeI CTNAG 4 cut(s) 414, 855, 1034, 1074
DpnI GATC 1 cut(s) 179
DpnII GATC 1 cut(s) 177
Eam1104I CTCTTC 1 cut(s) 675
EarI CTCTTC 1 cut(s) 675
Eco130I CCWWGG 1 cut(s) 538
Eco147I AGGCCT 1 cut(s) 919
Eco31I GGTCTC 1 cut(s) 493
Eco47I GGWCC 1 cut(s) 574
Eco57I CTGAAG 1 cut(s) 260
Eco72I CACGTG 1 cut(s) 442
EcoNI CCTNNNNNAGG 1 cut(s) 831
EcoRII CCWGG 3 cut(s) 82, 447, 919
EcoT14I CCWWGG 1 cut(s) 538
ErhI CCWWGG 1 cut(s) 538
Esp3I CGTCTC 1 cut(s) 855
FaeI CATG 6 cut(s) 46, 436, 476, 786, 896, 955
FaqI GGGAC 1 cut(s) 69
FatI CATG 6 cut(s) 42, 432, 472, 782, 892, 951
FauI CCCGC 2 cut(s) 436, 812
Fnu4HI GCNGC 2 cut(s) 437, 462
FokI GGATG 5 cut(s) 199, 236, 520, 725, 767
Fsp4HI GCNGC 2 cut(s) 437, 462
FspBI CTAG 6 cut(s) 36, 345, 657, 1055, 1062, 1089
GlaI GCGC 1 cut(s) 88
GluI GCNGC 2 cut(s) 437, 462
GsuI CTGGAG 1 cut(s) 1004
HaeIII GGCC 3 cut(s) 826, 919, 929
HapII CCGG 1 cut(s) 184
HgaI GACGC 1 cut(s) 337
HhaI GCGC 1 cut(s) 89
Hin1II CATG 6 cut(s) 46, 436, 476, 786, 896, 955
Hin6I GCGC 1 cut(s) 87
HinP1I GCGC 1 cut(s) 87
HincII GTYRAC 1 cut(s) 394
HindII GTYRAC 1 cut(s) 394
HinfI GANTC 5 cut(s) 192, 354, 480, 519, 886
HpaI GTTAAC 1 cut(s) 394
HpaII CCGG 1 cut(s) 184
HphI GGTGA 2 cut(s) 566, 1022
Hpy166II GTNNAC 3 cut(s) 394, 445, 687
Hpy188I TCNGA 6 cut(s) 148, 230, 353, 458, 814, 867
Hpy188III TCNNGA 7 cut(s) 31, 218, 278, 572, 773, 854, 1099
Hpy8I GTNNAC 3 cut(s) 394, 445, 687
HpyAV CCTTC 4 cut(s) 147, 284, 705, 837
HpyCH4III ACNGT 2 cut(s) 212, 1020
HpyCH4IV ACGT 3 cut(s) 441, 558, 848
HpyCH4V TGCA 1 cut(s) 436
HpyF10VI GCNNNNNNNGC 2 cut(s) 221, 458
HpyF3I CTNAG 4 cut(s) 414, 855, 1034, 1074
HpySE526I ACGT 3 cut(s) 441, 558, 848
Hsp92II CATG 6 cut(s) 46, 436, 476, 786, 896, 955
HspAI GCGC 1 cut(s) 87
KspAI GTTAAC 1 cut(s) 394
Kzo9I GATC 1 cut(s) 177
LmnI GCTCC 3 cut(s) 239, 276, 542
Lsp1109I GCAGC 2 cut(s) 448, 473
LweI GCATC 4 cut(s) 48, 733, 738, 745
MaeI CTAG 6 cut(s) 36, 345, 657, 1055, 1062, 1089
MaeII ACGT 3 cut(s) 441, 558, 848
MaeIII GTNAC 2 cut(s) 554, 1084
MalI GATC 1 cut(s) 179
MboI GATC 1 cut(s) 177
MboII GAAGA 3 cut(s) 14, 662, 1062
MhlI GDGCHC 2 cut(s) 217, 908
MluCI AATT 3 cut(s) 310, 579, 881
MlyI GAGTC 2 cut(s) 186, 528
MmeI TCCRAC 2 cut(s) 261, 352
MseI TTAA 2 cut(s) 393, 512
MspI CCGG 1 cut(s) 184
MspR9I CCNGG 3 cut(s) 84, 449, 921
Mva1269I GAATGC 1 cut(s) 865
MvaI CCWGG 3 cut(s) 84, 449, 921
MwoI GCNNNNNNNGC 2 cut(s) 221, 458
NdeII GATC 1 cut(s) 177
NlaIII CATG 6 cut(s) 46, 436, 476, 786, 896, 955
NlaIV GGNNCC 4 cut(s) 235, 576, 653, 907
NmeAIII GCCGAG 1 cut(s) 746
NmuCI GTSAC 1 cut(s) 554
NspI RCATGY 1 cut(s) 896
PaqCI CACCTGC 1 cut(s) 824
PceI AGGCCT 1 cut(s) 919
PctI GAATGC 1 cut(s) 865
PfeI GAWTC 3 cut(s) 354, 480, 886
PkrI GCNGC 2 cut(s) 438, 463
PleI GAGTC 2 cut(s) 186, 527
PmaCI CACGTG 1 cut(s) 442
PmlI CACGTG 1 cut(s) 442
PpsI GAGTC 2 cut(s) 186, 527
Ppu21I YACGTR 1 cut(s) 442
Psp6I CCWGG 3 cut(s) 82, 447, 919
PspCI CACGTG 1 cut(s) 442
PspGI CCWGG 3 cut(s) 82, 447, 919
PspN4I GGNNCC 4 cut(s) 235, 576, 653, 907
PspPI GGNCC 2 cut(s) 574, 927
RsaI GTAC 4 cut(s) 362, 446, 764, 1066
RsaNI GTAC 4 cut(s) 361, 445, 763, 1065
SaqAI TTAA 2 cut(s) 393, 512
SatI GCNGC 2 cut(s) 437, 462
Sau3AI GATC 1 cut(s) 177
Sau96I GGNCC 2 cut(s) 574, 927
ScaI AGTACT 1 cut(s) 1066
SchI GAGTC 2 cut(s) 186, 528
ScrFI CCNGG 3 cut(s) 84, 449, 921
SduI GDGCHC 2 cut(s) 217, 908
SfaNI GCATC 4 cut(s) 48, 733, 738, 745
SinI GGWCC 1 cut(s) 574
SmlI CTYRAG 2 cut(s) 773, 1097
SmoI CTYRAG 2 cut(s) 773, 1097
SpeI ACTAGT 2 cut(s) 1061, 1088
Sse9I AATT 3 cut(s) 310, 579, 881
SseBI AGGCCT 1 cut(s) 919
SsiI CCGC 3 cut(s) 429, 495, 819
SspMI CTAG 6 cut(s) 36, 345, 657, 1055, 1062, 1089
StuI AGGCCT 1 cut(s) 919
StyD4I CCNGG 3 cut(s) 82, 447, 919
StyI CCWWGG 1 cut(s) 538
TaaI ACNGT 2 cut(s) 212, 1020
TaiI ACGT 3 cut(s) 444, 561, 851
TaqI TCGA 2 cut(s) 243, 501
TaqII GACCGA 1 cut(s) 492
TasI AATT 3 cut(s) 310, 579, 881
TatI WGTACW 3 cut(s) 360, 762, 1064
TfiI GAWTC 3 cut(s) 354, 480, 886
Tru1I TTAA 2 cut(s) 393, 512
Tru9I TTAA 2 cut(s) 393, 512
TscAI CASTG 1 cut(s) 618
TseFI GTSAC 1 cut(s) 554
TseI GCWGC 2 cut(s) 436, 461
Tsp45I GTSAC 1 cut(s) 554
TspDTI ATGAA 1 cut(s) 393
TspGWI ACGGA 1 cut(s) 411
TspRI CASTG 1 cut(s) 618
VpaK11BI GGWCC 1 cut(s) 574
XagI CCTNNNNNAGG 1 cut(s) 831
XceI RCATGY 1 cut(s) 896
XspI CTAG 6 cut(s) 36, 345, 657, 1055, 1062, 1089
ZrmI AGTACT 1 cut(s) 1066
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.