Prupe.1G313600_v2.0.a1

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp01
OG0016536
Physical Location & Seq
Forward (+)
30363809 .. 30364627
819 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.1G313600.1

Sequence Viewer

Length: 819 bp
ATGGCCATCGAGGTGTGCTCGGAGATTTCTAGCCCTGGATTTAGTCCAAGAATTTCATTTTCTCATGATCTAGACAAGACATGTCCTGTGGCAAAAGAAGGGCAACGATTAGACTCTTCGCTCTTGGATTCAAGCTCAGATTTCGACTTCTGCATTGTCAATAACCTTAAACTAGAGTTGTCTTCTGCAGATGAGCTTTTCTCCAATGGGAAGATTCTTCCTGTCCAAATCAAGAGAAATCCCATTGCCATTGCCACCAAAGAAACCCATCAGCCTGATGAGGCTGTTTATCCTCCACCTGCTCAGCATCGTTCAACAACTAGGAACACAACAGAGAAGAAGAGGTTGAAAGAATTCTTAGACACCAACGTTGATGCAGATGAAGATGAAGATGAGAAGCCTCCAACAAAGCCTTTCTGGCAGTTCAGGCGAAGTAGCAGCCTCAATTGTGACACTGCTCGCGGCAAGAGCTTAATTCGGTCATTACAATTTCTTTCAAGAAGCAATTCAACCGGGTCAGCTCCAAATGCAAAGCAGACAGTGGCTCCAAAGGAAACCCATCAGAAGCAGCATTTGCAGAAACAACCATCTATTTCAAGCAGAAGATCATCGGCATCATCATATTCAAGTACATATTATGCTTATAATAATTCATGCCCGCAAAAGCCTTCGTTAAGGAAGAGTGGATCTTATGGCAATGGGGTTAGAATTAGTCCTGTTCTGAATCTCCCACCACCATACATTTCCAAAGTGACAGTAAGTTTTTTTGGGTTTGGTTCTCTCTTCTGTAATGGTAAGTTAAAAAAGAAGAAGAAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF1645

Protein Analysis

273

Amino Acids

30.24

Weight (kDa)

9.48

Isoelectric Point (pI)

58.66

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0016536)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G68330
fragaria_vesca FvH4_4g27060
malus_domestica MD13G1039600.v1.1 MD16G1040500.v1.1
prunus_persica Prupe.1G313600_v2.0.a1
rosa_chinensis RchiOBHm_Chr4g0434861
rosa_laevigata RLG00000006640
rosa_multiflora Rmu_sc0003726.1_g000002
rosa_roxburghii Rroxscaffold_5G00376070
rosa_rugosa Rorug04G0279700
rosa_samantha Rh4AG335500 Rh4BG344000 Rh4DG338000
rosa_wichuraiana Rw4G029270

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 645
AarI CACCTGC 1 cut(s) 307
Acc36I ACCTGC 1 cut(s) 307
AccII CGCG 1 cut(s) 462
AciI CCGC 2 cut(s) 462, 659
AclI AACGTT 1 cut(s) 369
AclWI GGATC 1 cut(s) 694
AcoI YGGCCR 1 cut(s) 3
AcsI RAATTY 2 cut(s) 51, 353
AfaI GTAC 1 cut(s) 631
AflIII ACRYGT 1 cut(s) 80
AgsI TTSAA 7 cut(s) 132, 315, 349, 498, 510, 597, 627
AjnI CCWGG 1 cut(s) 34
AluBI AGCT 4 cut(s) 135, 196, 471, 521
AluI AGCT 4 cut(s) 135, 196, 471, 521
Alw21I GWGCWC 1 cut(s) 20
AlwI GGATC 1 cut(s) 694
AoxI GGCC 1 cut(s) 3
ApeKI GCWGC 2 cut(s) 438, 568
ApoI RAATTY 2 cut(s) 51, 353
Asp700I GAANNNNTTC 2 cut(s) 353, 505
AsuC2I CCSGG 1 cut(s) 514
BalI TGGCCA 1 cut(s) 5
BbsI GAAGAC 1 cut(s) 174
Bbv12I GWGCWC 1 cut(s) 20
BbvI GCAGC 2 cut(s) 450, 580
BccI CCATC 4 cut(s) 14, 276, 567, 595
BciT130I CCWGG 1 cut(s) 36
BcnI CCSGG 1 cut(s) 514
BfaI CTAG 4 cut(s) 30, 71, 173, 321
BfmI CTRYAG 1 cut(s) 186
BfuAI ACCTGC 1 cut(s) 307
BglI GCCNNNNNGGC 1 cut(s) 418
BisI GCNGC 3 cut(s) 439, 463, 569
BlpI GCTNAGC 1 cut(s) 303
BlsI GCNGC 3 cut(s) 440, 464, 570
Bme1390I CCNGG 2 cut(s) 36, 514
BmiI GGNNCC 1 cut(s) 546
BmrFI CCNGG 2 cut(s) 36, 514
BmsI GCATC 3 cut(s) 316, 364, 623
BpiI GAAGAC 1 cut(s) 174
BplI GAGNNNNNCTC 3 cut(s) 34, 185, 217
Bpu1102I GCTNAGC 1 cut(s) 303
BpuMI CCSGG 1 cut(s) 514
BsaJI CCNNGG 1 cut(s) 34
BsaXI ACNNNNNCTCC 2 cut(s) 529, 559
Bse3DI GCAATG 3 cut(s) 243, 249, 703
BseBI CCWGG 1 cut(s) 36
BseDI CCNNGG 1 cut(s) 34
BseMI GCAATG 3 cut(s) 243, 249, 703
BseMII CTCAG 2 cut(s) 150, 317
BseXI GCAGC 2 cut(s) 450, 580
Bsh1236I CGCG 1 cut(s) 462
BshFI GGCC 1 cut(s) 5
BsiHKAI GWGCWC 1 cut(s) 20
BsiSI CCGG 1 cut(s) 513
BsnI GGCC 1 cut(s) 5
Bsp1286I GDGCHC 1 cut(s) 20
Bsp143I GATC 3 cut(s) 67, 605, 686
Bsp1720I GCTNAGC 1 cut(s) 303
BspACI CCGC 2 cut(s) 462, 659
BspANI GGCC 1 cut(s) 5
BspCNI CTCAG 2 cut(s) 149, 316
BspFNI CGCG 1 cut(s) 462
BspHI TCATGA 1 cut(s) 64
BspLI GGNNCC 1 cut(s) 546
BspMAI CTGCAG 1 cut(s) 190
BspMI ACCTGC 1 cut(s) 307
BspPI GGATC 1 cut(s) 694
BsrDI GCAATG 3 cut(s) 243, 249, 703
BssECI CCNNGG 1 cut(s) 34
BssMI GATC 3 cut(s) 67, 605, 686
Bst2UI CCWGG 1 cut(s) 36
Bst4CI ACNGT 2 cut(s) 541, 757
Bst6I CTCTTC 4 cut(s) 121, 335, 674, 788
BstAPI GCANNNNNTGC 1 cut(s) 574
BstC8I GCNNGC 2 cut(s) 460, 659
BstDEI CTNAG 3 cut(s) 136, 303, 358
BstFNI CGCG 1 cut(s) 462
BstKTI GATC 3 cut(s) 70, 608, 689
BstMBI GATC 3 cut(s) 67, 605, 686
BstMWI GCNNNNNNNGC 5 cut(s) 418, 427, 468, 527, 574
BstNI CCWGG 1 cut(s) 36
BstNSI RCATGY 1 cut(s) 84
BstSCI CCNGG 2 cut(s) 34, 512
BstSFI CTRYAG 1 cut(s) 186
BstUI CGCG 1 cut(s) 462
BstV1I GCAGC 2 cut(s) 450, 580
BstV2I GAAGAC 1 cut(s) 174
BstX2I RGATCY 1 cut(s) 686
BstYI RGATCY 1 cut(s) 686
BsuRI GGCC 1 cut(s) 5
BtsI GCAGTG 1 cut(s) 453
BtsIMutI CAGTG 2 cut(s) 453, 546
BveI ACCTGC 1 cut(s) 307
Cac8I GCNNGC 2 cut(s) 460, 659
CciI TCATGA 1 cut(s) 64
Csp6I GTAC 1 cut(s) 630
CviAII CATG 3 cut(s) 65, 81, 654
CviQI GTAC 1 cut(s) 630
DdeI CTNAG 3 cut(s) 136, 303, 358
DpnI GATC 3 cut(s) 69, 607, 688
DpnII GATC 3 cut(s) 67, 605, 686
EaeI YGGCCR 1 cut(s) 3
Eam1104I CTCTTC 4 cut(s) 121, 335, 674, 788
EarI CTCTTC 4 cut(s) 121, 335, 674, 788
EcoRI GAATTC 1 cut(s) 353
EcoRII CCWGG 1 cut(s) 34
FaeI CATG 3 cut(s) 68, 84, 657
FaiI YATR 9 cut(s) 66, 82, 622, 634, 639, 645, 655, 693, 739
FatI CATG 3 cut(s) 64, 80, 653
FauI CCCGC 1 cut(s) 666
Fnu4HI GCNGC 3 cut(s) 439, 463, 569
Fsp4HI GCNGC 3 cut(s) 439, 463, 569
FspBI CTAG 4 cut(s) 30, 71, 173, 321
GluI GCNGC 3 cut(s) 439, 463, 569
HaeIII GGCC 1 cut(s) 5
HapII CCGG 1 cut(s) 513
Hin1II CATG 3 cut(s) 68, 84, 657
HinfI GANTC 4 cut(s) 113, 128, 214, 724
HpaII CCGG 1 cut(s) 513
Hpy188I TCNGA 4 cut(s) 22, 139, 564, 723
Hpy188III TCNNGA 4 cut(s) 65, 71, 232, 498
HpyAV CCTTC 2 cut(s) 92, 678
HpyCH4III ACNGT 2 cut(s) 541, 757
HpyCH4IV ACGT 1 cut(s) 369
HpyCH4V TGCA 5 cut(s) 153, 188, 377, 530, 577
HpyF10VI GCNNNNNNNGC 5 cut(s) 418, 427, 468, 527, 574
HpyF3I CTNAG 3 cut(s) 136, 303, 358
HpySE526I ACGT 1 cut(s) 369
Hsp92II CATG 3 cut(s) 68, 84, 657
Kzo9I GATC 3 cut(s) 67, 605, 686
LmnI GCTCC 2 cut(s) 526, 550
Lsp1109I GCAGC 2 cut(s) 450, 580
LweI GCATC 3 cut(s) 316, 364, 623
MaeI CTAG 4 cut(s) 30, 71, 173, 321
MaeII ACGT 1 cut(s) 369
MaeIII GTNAC 2 cut(s) 449, 751
MalI GATC 3 cut(s) 69, 607, 688
MboI GATC 3 cut(s) 67, 605, 686
MfeI CAATTG 1 cut(s) 445
MflI RGATCY 1 cut(s) 686
MhlI GDGCHC 1 cut(s) 20
MlsI TGGCCA 1 cut(s) 5
MluCI AATT 8 cut(s) 51, 353, 445, 474, 488, 505, 649, 708
MluNI TGGCCA 1 cut(s) 5
MlyI GAGTC 1 cut(s) 107
MmeI TCCRAC 1 cut(s) 428
MnlI CCTC 6 cut(s) 4, 274, 303, 336, 411, 452
Mox20I TGGCCA 1 cut(s) 5
MroXI GAANNNNTTC 2 cut(s) 353, 505
MscI TGGCCA 1 cut(s) 5
MseI TTAA 4 cut(s) 168, 473, 674, 800
MslI CAYNNNNRTG 1 cut(s) 11
Msp20I TGGCCA 1 cut(s) 5
MspI CCGG 1 cut(s) 513
MspR9I CCNGG 2 cut(s) 36, 514
MunI CAATTG 1 cut(s) 445
MvaI CCWGG 1 cut(s) 36
MvnI CGCG 1 cut(s) 462
MwoI GCNNNNNNNGC 5 cut(s) 418, 427, 468, 527, 574
NciI CCSGG 1 cut(s) 514
NdeII GATC 3 cut(s) 67, 605, 686
NlaIII CATG 3 cut(s) 68, 84, 657
NlaIV GGNNCC 1 cut(s) 546
NmuCI GTSAC 2 cut(s) 449, 751
NspI RCATGY 1 cut(s) 84
PagI TCATGA 1 cut(s) 64
PaqCI CACCTGC 1 cut(s) 307
PciI ACATGT 1 cut(s) 80
PdmI GAANNNNTTC 2 cut(s) 353, 505
PfeI GAWTC 3 cut(s) 128, 214, 724
PkrI GCNGC 3 cut(s) 440, 464, 570
PleI GAGTC 1 cut(s) 107
PpsI GAGTC 1 cut(s) 107
PscI ACATGT 1 cut(s) 80
PsiI TTATAA 1 cut(s) 645
Psp1406I AACGTT 1 cut(s) 369
Psp6I CCWGG 1 cut(s) 34
PspGI CCWGG 1 cut(s) 34
PspN4I GGNNCC 1 cut(s) 546
PstI CTGCAG 1 cut(s) 190
PsuI RGATCY 1 cut(s) 686
RsaI GTAC 1 cut(s) 631
RsaNI GTAC 1 cut(s) 630
RseI CAYNNNNRTG 1 cut(s) 11
SaqAI TTAA 4 cut(s) 168, 473, 674, 800
SatI GCNGC 3 cut(s) 439, 463, 569
Sau3AI GATC 3 cut(s) 67, 605, 686
SchI GAGTC 1 cut(s) 107
ScrFI CCNGG 2 cut(s) 36, 514
SduI GDGCHC 1 cut(s) 20
SetI ASST 9 cut(s) 15, 137, 168, 198, 301, 347, 372, 473, 523
SfaNI GCATC 3 cut(s) 316, 364, 623
SfcI CTRYAG 1 cut(s) 186
SmiMI CAYNNNNRTG 1 cut(s) 11
Sse9I AATT 8 cut(s) 51, 353, 445, 474, 488, 505, 649, 708
SsiI CCGC 2 cut(s) 462, 659
SspMI CTAG 4 cut(s) 30, 71, 173, 321
StyD4I CCNGG 2 cut(s) 34, 512
TaaI ACNGT 2 cut(s) 541, 757
TaiI ACGT 1 cut(s) 372
TaqI TCGA 2 cut(s) 9, 144
TaqII GACCGA 1 cut(s) 468
TasI AATT 8 cut(s) 51, 353, 445, 474, 488, 505, 649, 708
TatI WGTACW 1 cut(s) 629
TauI GCSGC 1 cut(s) 465
TfiI GAWTC 3 cut(s) 128, 214, 724
Tru1I TTAA 4 cut(s) 168, 473, 674, 800
Tru9I TTAA 4 cut(s) 168, 473, 674, 800
TscAI CASTG 2 cut(s) 460, 546
TseFI GTSAC 2 cut(s) 449, 751
TseI GCWGC 2 cut(s) 438, 568
Tsp45I GTSAC 2 cut(s) 449, 751
TspDTI ATGAA 4 cut(s) 45, 396, 402, 642
TspRI CASTG 2 cut(s) 460, 546
XapI RAATTY 2 cut(s) 51, 353
XbaI TCTAGA 1 cut(s) 70
XceI RCATGY 1 cut(s) 84
XmnI GAANNNNTTC 2 cut(s) 353, 505
XspI CTAG 4 cut(s) 30, 71, 173, 321
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.