Rmu_sc0003726.1_g000002

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0003726.1
OG0016536
Physical Location & Seq
Forward (+)
1603 .. 4186
2584 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0003726.1_g000002.1.cds

Sequence Viewer

Length: 1428 bp
ctgtcgctaaagtgcggacgtcgacgcagcaacagcttccaggcggcaacggcggtgcgcggcttgcaggaggggggccggaggcatcccggaccgttatgggcaatgatcgaggtcggaggagatcaaggttgcacgttctgggcaacggccagacctgcaattgcaaaattatgggtaacacagcaacctcgtcgtcggcgactccacccgactgcagaccggcttctcagacccctagcccccctccggcaagccccgccgcgccgtcgaagcttaatcaaggccggaggagcgacgtccacattttttctgggttgcagacgtccgctctcgaactgctccctcagacaaggtggaaaagctgaagcagcaaattctgccttctcattcccatatttcaaatccctgccagctttccttcttcctttgactccaaatcagttgacatcgtttgtcattttttggctctctggtgattcaaaatctccttcttctggttttctttgcattcaaagcagtggcttggggcaggtttttccagagttacactactctctatctctttatgaaagttttctgctttcaactatggccatcgaggtgtgctcggagatttccagccccgtatttagtccaaggatttcgttttctcatgatctcgacaaggcaaacgttacggtgacaaaagaagagcagccacaacaacggttagactcatctctggtggattcaagttctgatttcgacttctgcatagtcaataatatcaagctagagctgtcttcggccgacgagcttttctccaatggcaagattcttcctgtccaaatcaagctaaatcccaacaccaccgccaccaaagaagcccttcttcagcctcctcatcaatccgcaacaaaaaacacagagaaaaagagactgaaggagttcttagacgacagcaatgctgaagatgaaactaaagaaaattatgagaagcctgcgattgcaaagccctcctggcagttcaggagaagcagcagcctcaatttcgatagtactactactgctcgcggtatgagcttaatccgatcactccattttctttcgagaagcaactcaaccggatcagctccaaatccaaagcaaacagttaccccaaatcagaagcagcagcatttgcggaaaaaccaatctaccaactcaagaagaagatcatcatcagcatcatcatcatcatgttcaagtagcactacatattatccttacaacacctcaccgcggtcacaaaagccttcgttaaggaagagtggatcttacggcaatggggtaagaattagtccagtcctgaatctcccaccaccttacatttcaaaagttaccgtgagtttttttgggttcagatctctcttctgtaatggtaagttgaaaaggaagaagaaatga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF1645

Protein Analysis

475

Amino Acids

52.68

Weight (kDa)

10.24

Isoelectric Point (pI)

70.87

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0016536)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G68330
fragaria_vesca FvH4_4g27060
malus_domestica MD13G1039600.v1.1 MD16G1040500.v1.1
prunus_persica Prupe.1G313600_v2.0.a1
rosa_chinensis RchiOBHm_Chr4g0434861
rosa_laevigata RLG00000006640
rosa_multiflora Rmu_sc0003726.1_g000002
rosa_roxburghii Rroxscaffold_5G00376070
rosa_rugosa Rorug04G0279700
rosa_samantha Rh4AG335500 Rh4BG344000 Rh4DG338000
rosa_wichuraiana Rw4G029270

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 3 cut(s) 22, 302, 328
Acc36I ACCTGC 2 cut(s) 166, 523
AccBSI CCGCTC 1 cut(s) 331
AccI GTMKAC 1 cut(s) 22
AccII CGCG 4 cut(s) 60, 265, 1056, 1264
AclI AACGTT 1 cut(s) 675
AclWI GGATC 2 cut(s) 1117, 1303
AcoI YGGCCR 3 cut(s) 150, 594, 789
AcsI RAATTY 1 cut(s) 376
AcuI CTGAAG 4 cut(s) 387, 860, 944, 972
AcyI GRCGYC 3 cut(s) 19, 299, 325
AfaI GTAC 1 cut(s) 1042
AfiI CCNNNNNNNGG 3 cut(s) 249, 497, 1263
AgsI TTSAA 8 cut(s) 403, 483, 515, 588, 735, 1227, 1356, 1411
AjnI CCWGG 2 cut(s) 39, 1001
Alw21I GWGCWC 1 cut(s) 611
Alw26I GTCTC 1 cut(s) 913
AlwI GGATC 2 cut(s) 1117, 1303
AoxI GGCC 5 cut(s) 76, 150, 285, 594, 789
ApeKI GCWGC 7 cut(s) 27, 371, 697, 1020, 1023, 1153, 1156
ApoI RAATTY 1 cut(s) 376
Asp700I GAANNNNTTC 3 cut(s) 576, 870, 929
AspLEI GCGC 2 cut(s) 60, 267
AspS9I GGNCC 2 cut(s) 76, 92
AsuC2I CCSGG 1 cut(s) 90
AsuHPI GGTGA 3 cut(s) 488, 694, 1251
AvaII GGWCC 1 cut(s) 92
BalI TGGCCA 1 cut(s) 596
BbsI GAAGAC 1 cut(s) 777
Bbv12I GWGCWC 1 cut(s) 611
BbvI GCAGC 7 cut(s) 39, 383, 709, 1032, 1035, 1165, 1168
BccI CCATC 1 cut(s) 605
BceAI ACGGC 4 cut(s) 66, 165, 252, 1318
BcgI CGANNNNNNTGC 4 cut(s) 176, 210, 929, 963
BciT130I CCWGG 2 cut(s) 41, 1003
BcnI CCSGG 1 cut(s) 90
BcoDI GTCTC 1 cut(s) 913
BfaI CTAG 2 cut(s) 239, 776
BfmI CTRYAG 1 cut(s) 216
BfuAI ACCTGC 2 cut(s) 166, 523
BglI GCCNNNNNGGC 1 cut(s) 1003
BglII AGATCT 1 cut(s) 1385
BmcAI AGTACT 1 cut(s) 1042
Bme1390I CCNGG 3 cut(s) 41, 90, 1003
Bme18I GGWCC 1 cut(s) 92
BmgT120I GGNCC 2 cut(s) 76, 92
BmiI GGNNCC 1 cut(s) 77
BmrFI CCNGG 3 cut(s) 41, 90, 1003
BmsI GCATC 2 cut(s) 94, 1217
BpiI GAAGAC 1 cut(s) 777
BplI GAGNNNNNCTC 4 cut(s) 593, 625, 788, 820
BpuEI CTTGAG 1 cut(s) 1171
BpuMI CCSGG 1 cut(s) 90
BsaBI GATNNNNATC 1 cut(s) 1201
BsaHI GRCGYC 3 cut(s) 19, 299, 325
BsaJI CCNNGG 2 cut(s) 638, 1262
BsaWI WCCGGW 1 cut(s) 1106
Bsc4I CCNNNNNNNGG 3 cut(s) 249, 497, 1263
Bse118I RCCGGY 1 cut(s) 222
Bse1I ACTGG 1 cut(s) 1325
Bse3DI GCAATG 3 cut(s) 111, 952, 1312
Bse8I GATNNNNATC 1 cut(s) 1201
BseBI CCWGG 2 cut(s) 41, 1003
BseDI CCNNGG 2 cut(s) 638, 1262
BseGI GGATG 1 cut(s) 85
BseJI GATNNNNATC 1 cut(s) 1201
BseLI CCNNNNNNNGG 3 cut(s) 249, 497, 1263
BseMI GCAATG 3 cut(s) 111, 952, 1312
BseMII CTCAG 2 cut(s) 244, 361
BseNI ACTGG 1 cut(s) 1325
BseRI GAGGAG 3 cut(s) 135, 306, 873
BseX3I CGGCCG 1 cut(s) 789
BseXI GCAGC 7 cut(s) 39, 383, 709, 1032, 1035, 1165, 1168
Bsh1236I CGCG 4 cut(s) 60, 265, 1056, 1264
Bsh1285I CGRYCG 1 cut(s) 792
BshFI GGCC 5 cut(s) 78, 152, 287, 596, 791
BsiEI CGRYCG 1 cut(s) 792
BsiHKAI GWGCWC 1 cut(s) 611
BsiSI CCGG 6 cut(s) 79, 90, 223, 250, 288, 1107
BslI CCNNNNNNNGG 3 cut(s) 249, 497, 1263
BsmAI GTCTC 1 cut(s) 913
BsmI GAATGC 1 cut(s) 510
BsnI GGCC 5 cut(s) 78, 152, 287, 596, 791
Bsp1286I GDGCHC 1 cut(s) 611
Bsp143I GATC 8 cut(s) 108, 124, 658, 1073, 1109, 1196, 1295, 1385
BspANI GGCC 5 cut(s) 78, 152, 287, 596, 791
BspCNI CTCAG 2 cut(s) 243, 360
BspFNI CGCG 4 cut(s) 60, 265, 1056, 1264
BspHI TCATGA 1 cut(s) 655
BspLI GGNNCC 1 cut(s) 77
BspMAI CTGCAG 1 cut(s) 220
BspMI ACCTGC 2 cut(s) 166, 523
BspPI GGATC 2 cut(s) 1117, 1303
BspQI GCTCTTC 1 cut(s) 687
BsrBI CCGCTC 1 cut(s) 331
BsrDI GCAATG 3 cut(s) 111, 952, 1312
BsrFI RCCGGY 1 cut(s) 222
BsrI ACTGG 1 cut(s) 1325
BssAI RCCGGY 1 cut(s) 222
BssECI CCNNGG 2 cut(s) 638, 1262
BssMI GATC 8 cut(s) 108, 124, 658, 1073, 1109, 1196, 1295, 1385
BssNI GRCGYC 3 cut(s) 19, 299, 325
BssT1I CCWWGG 1 cut(s) 638
Bst2UI CCWGG 2 cut(s) 41, 1003
Bst4CI ACNGT 5 cut(s) 96, 682, 711, 1135, 1366
Bst6I CTCTTC 3 cut(s) 687, 1283, 1397
BstACI GRCGYC 3 cut(s) 19, 299, 325
BstAPI GCANNNNNTGC 2 cut(s) 380, 1162
BstC8I GCNNGC 5 cut(s) 65, 255, 414, 984, 1054
BstDEI CTNAG 3 cut(s) 230, 347, 934
BstDSI CCRYGG 1 cut(s) 1262
BstF5I GGATG 1 cut(s) 85
BstFNI CGCG 4 cut(s) 60, 265, 1056, 1264
BstHHI GCGC 2 cut(s) 60, 267
BstKTI GATC 8 cut(s) 111, 127, 661, 1076, 1112, 1199, 1298, 1388
BstMAI GTCTC 1 cut(s) 913
BstMBI GATC 8 cut(s) 108, 124, 658, 1073, 1109, 1196, 1295, 1385
BstMCI CGRYCG 1 cut(s) 792
BstNI CCWGG 2 cut(s) 41, 1003
BstSCI CCNGG 3 cut(s) 39, 88, 1001
BstSFI CTRYAG 1 cut(s) 216
BstUI CGCG 4 cut(s) 60, 265, 1056, 1264
BstV1I GCAGC 7 cut(s) 39, 383, 709, 1032, 1035, 1165, 1168
BstV2I GAAGAC 1 cut(s) 777
BstX2I RGATCY 2 cut(s) 1295, 1385
BstYI RGATCY 2 cut(s) 1295, 1385
BstZI CGGCCG 1 cut(s) 789
BsuRI GGCC 5 cut(s) 78, 152, 287, 596, 791
BtgI CCRYGG 1 cut(s) 1262
BtsCI GGATG 1 cut(s) 85
BtsI GCAGTG 1 cut(s) 526
BtsIMutI CAGTG 1 cut(s) 526
BveI ACCTGC 2 cut(s) 166, 523
Cac8I GCNNGC 5 cut(s) 65, 255, 414, 984, 1054
CciI TCATGA 1 cut(s) 655
CfoI GCGC 2 cut(s) 60, 267
Cfr10I RCCGGY 1 cut(s) 222
Cfr13I GGNCC 2 cut(s) 76, 92
Cfr42I CCGCGG 1 cut(s) 1265
CpoI CGGWCCG 1 cut(s) 92
CseI GACGC 1 cut(s) 33
Csp6I GTAC 1 cut(s) 1041
CspI CGGWCCG 1 cut(s) 92
CviAII CATG 2 cut(s) 656, 1221
CviQI GTAC 1 cut(s) 1041
DdeI CTNAG 3 cut(s) 230, 347, 934
DpnI GATC 8 cut(s) 110, 126, 660, 1075, 1111, 1198, 1297, 1387
DpnII GATC 8 cut(s) 108, 124, 658, 1073, 1109, 1196, 1295, 1385
EaeI YGGCCR 3 cut(s) 150, 594, 789
EagI CGGCCG 1 cut(s) 789
Eam1104I CTCTTC 3 cut(s) 687, 1283, 1397
EarI CTCTTC 3 cut(s) 687, 1283, 1397
EclXI CGGCCG 1 cut(s) 789
Eco130I CCWWGG 1 cut(s) 638
Eco47I GGWCC 1 cut(s) 92
Eco52I CGGCCG 1 cut(s) 789
Eco57I CTGAAG 4 cut(s) 387, 860, 944, 972
EcoRII CCWGG 2 cut(s) 39, 1001
EcoT14I CCWWGG 1 cut(s) 638
ErhI CCWWGG 1 cut(s) 638
FaeI CATG 2 cut(s) 659, 1224
FalI AAGNNNNNCTT 6 cut(s) 855, 887, 858, 890, 917, 949
FatI CATG 2 cut(s) 655, 1220
FauI CCCGC 1 cut(s) 267
FblI GTMKAC 1 cut(s) 22
FokI GGATG 1 cut(s) 72
FspBI CTAG 2 cut(s) 239, 776
GlaI GCGC 2 cut(s) 59, 266
HaeIII GGCC 5 cut(s) 78, 152, 287, 596, 791
HapII CCGG 6 cut(s) 79, 90, 223, 250, 288, 1107
HgaI GACGC 1 cut(s) 33
HhaI GCGC 2 cut(s) 60, 267
Hin1I GRCGYC 3 cut(s) 19, 299, 325
Hin1II CATG 2 cut(s) 659, 1224
Hin6I GCGC 2 cut(s) 58, 265
HinP1I GCGC 2 cut(s) 58, 265
HincII GTYRAC 2 cut(s) 23, 447
HindII GTYRAC 2 cut(s) 23, 447
HindIII AAGCTT 1 cut(s) 274
HinfI GANTC 7 cut(s) 204, 433, 479, 716, 731, 817, 1333
HpaII CCGG 6 cut(s) 79, 90, 223, 250, 288, 1107
HphI GGTGA 3 cut(s) 488, 694, 1251
Hpy166II GTNNAC 3 cut(s) 23, 303, 447
Hpy188I TCNGA 8 cut(s) 119, 233, 350, 613, 742, 1073, 1149, 1385
Hpy188III TCNNGA 8 cut(s) 334, 542, 656, 662, 1012, 1092, 1188, 1330
Hpy8I GTNNAC 3 cut(s) 23, 303, 447
Hpy99I CGWCG 7 cut(s) 24, 27, 198, 201, 273, 301, 797
HpyAV CCTTC 6 cut(s) 394, 431, 501, 881, 919, 1287
HpyCH4III ACNGT 5 cut(s) 96, 682, 711, 1135, 1366
HpyCH4IV ACGT 5 cut(s) 19, 137, 299, 325, 675
HpyCH4V TGCA 9 cut(s) 67, 135, 161, 167, 218, 321, 510, 756, 992
HpyF3I CTNAG 3 cut(s) 230, 347, 934
HpySE526I ACGT 5 cut(s) 19, 137, 299, 325, 675
Hsp92I GRCGYC 3 cut(s) 19, 299, 325
Hsp92II CATG 2 cut(s) 659, 1224
HspAI GCGC 2 cut(s) 58, 265
KspI CCGCGG 1 cut(s) 1265
Kzo9I GATC 8 cut(s) 108, 124, 658, 1073, 1109, 1196, 1295, 1385
LguI GCTCTTC 1 cut(s) 687
LmnI GCTCC 3 cut(s) 293, 347, 1120
Lsp1109I GCAGC 7 cut(s) 39, 383, 709, 1032, 1035, 1165, 1168
LweI GCATC 2 cut(s) 94, 1217
MaeI CTAG 2 cut(s) 239, 776
MaeII ACGT 5 cut(s) 19, 137, 299, 325, 675
MaeIII GTNAC 7 cut(s) 178, 546, 676, 682, 1135, 1266, 1360
MalI GATC 8 cut(s) 110, 126, 660, 1075, 1111, 1198, 1297, 1387
MbiI CCGCTC 1 cut(s) 331
MboI GATC 8 cut(s) 108, 124, 658, 1073, 1109, 1196, 1295, 1385
MfeI CAATTG 1 cut(s) 162
MflI RGATCY 2 cut(s) 1295, 1385
MhlI GDGCHC 1 cut(s) 611
MlsI TGGCCA 1 cut(s) 596
MluCI AATT 6 cut(s) 162, 170, 376, 970, 1030, 1317
MluNI TGGCCA 1 cut(s) 596
MlyI GAGTC 3 cut(s) 198, 427, 710
MmeI TCCRAC 1 cut(s) 97
Mox20I TGGCCA 1 cut(s) 596
MroXI GAANNNNTTC 3 cut(s) 576, 870, 929
MscI TGGCCA 1 cut(s) 596
MseI TTAA 3 cut(s) 278, 1067, 1283
MslI CAYNNNNRTG 2 cut(s) 602, 1219
Msp20I TGGCCA 1 cut(s) 596
MspA1I CMGCKG 1 cut(s) 1264
MspI CCGG 6 cut(s) 79, 90, 223, 250, 288, 1107
MspR9I CCNGG 3 cut(s) 41, 90, 1003
MunI CAATTG 1 cut(s) 162
Mva1269I GAATGC 1 cut(s) 510
MvaI CCWGG 2 cut(s) 41, 1003
MvnI CGCG 4 cut(s) 60, 265, 1056, 1264
NciI CCSGG 1 cut(s) 90
NdeII GATC 8 cut(s) 108, 124, 658, 1073, 1109, 1196, 1295, 1385
NlaIII CATG 2 cut(s) 659, 1224
NlaIV GGNNCC 1 cut(s) 77
NmuCI GTSAC 2 cut(s) 682, 1266
PagI TCATGA 1 cut(s) 655
PciSI GCTCTTC 1 cut(s) 687
PcsI WCGNNNNNNNCGW 1 cut(s) 199
PctI GAATGC 1 cut(s) 510
PdmI GAANNNNTTC 3 cut(s) 576, 870, 929
PfeI GAWTC 4 cut(s) 479, 731, 817, 1333
PfoI TCCNGGA 1 cut(s) 88
PleI GAGTC 3 cut(s) 198, 427, 710
PpsI GAGTC 3 cut(s) 198, 427, 710
Psp1406I AACGTT 1 cut(s) 675
Psp6I CCWGG 2 cut(s) 39, 1001
PspGI CCWGG 2 cut(s) 39, 1001
PspN4I GGNNCC 1 cut(s) 77
PspPI GGNCC 2 cut(s) 76, 92
PstI CTGCAG 1 cut(s) 220
PsuI RGATCY 2 cut(s) 1295, 1385
RsaI GTAC 1 cut(s) 1042
RsaNI GTAC 1 cut(s) 1041
RseI CAYNNNNRTG 2 cut(s) 602, 1219
Rsr2I CGGWCCG 1 cut(s) 92
RsrII CGGWCCG 1 cut(s) 92
SacII CCGCGG 1 cut(s) 1265
SalI GTCGAC 1 cut(s) 21
SapI GCTCTTC 1 cut(s) 687
SaqAI TTAA 3 cut(s) 278, 1067, 1283
Sau3AI GATC 8 cut(s) 108, 124, 658, 1073, 1109, 1196, 1295, 1385
Sau96I GGNCC 2 cut(s) 76, 92
ScaI AGTACT 1 cut(s) 1042
SchI GAGTC 3 cut(s) 198, 427, 710
ScrFI CCNGG 3 cut(s) 41, 90, 1003
SduI GDGCHC 1 cut(s) 611
SfaNI GCATC 2 cut(s) 94, 1217
SfcI CTRYAG 1 cut(s) 216
Sfr303I CCGCGG 1 cut(s) 1265
SgrBI CCGCGG 1 cut(s) 1265
SgrDI CGTCGACG 1 cut(s) 21
SinI GGWCC 1 cut(s) 92
SmiMI CAYNNNNRTG 2 cut(s) 602, 1219
SmlI CTYRAG 1 cut(s) 1186
SmoI CTYRAG 1 cut(s) 1186
Sse9I AATT 6 cut(s) 162, 170, 376, 970, 1030, 1317
SspMI CTAG 2 cut(s) 239, 776
StyD4I CCNGG 3 cut(s) 39, 88, 1001
StyI CCWWGG 1 cut(s) 638
TaaI ACNGT 5 cut(s) 96, 682, 711, 1135, 1366
TaiI ACGT 5 cut(s) 22, 140, 302, 328, 678
TaqI TCGA 9 cut(s) 22, 111, 271, 335, 600, 663, 747, 1035, 1091
TasI AATT 6 cut(s) 162, 170, 376, 970, 1030, 1317
TatI WGTACW 1 cut(s) 1040
TauI GCSGC 3 cut(s) 47, 63, 265
TfiI GAWTC 4 cut(s) 479, 731, 817, 1333
Tru1I TTAA 3 cut(s) 278, 1067, 1283
Tru9I TTAA 3 cut(s) 278, 1067, 1283
TscAI CASTG 1 cut(s) 526
TseFI GTSAC 2 cut(s) 682, 1266
TseI GCWGC 7 cut(s) 27, 371, 697, 1020, 1023, 1153, 1156
Tsp45I GTSAC 2 cut(s) 682, 1266
TspDTI ATGAA 2 cut(s) 585, 972
TspRI CASTG 1 cut(s) 526
VpaK11BI GGWCC 1 cut(s) 92
XapI RAATTY 1 cut(s) 376
XcmI CCANNNNNNNNNTGG 1 cut(s) 310
XmiI GTMKAC 1 cut(s) 22
XmnI GAANNNNTTC 3 cut(s) 576, 870, 929
XspI CTAG 2 cut(s) 239, 776
ZraI GACGTC 3 cut(s) 20, 300, 326
ZrmI AGTACT 1 cut(s) 1042
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.