MD13G1039600.v1.1

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr13
OG0016536
Physical Location & Seq
Reverse (-)
2700734 .. 2701612
879 bp
Loading structure...
UTR
Exon/CDS
Intron
MD13G1039600.v1.1.491

Sequence Viewer

Length: 879 bp
ATGGCCATTGAGGTCTGCTCGGAGATTTGGAGCCCCGGATTCAGTCCAAGAATTTCATTCTCCCATGATCTGGACAAGACGAATCATGCTCCGAAACAAGGGCAACGGTTAGACTCCTCTCTCTCGGATTCCACTGCCGATTTCGATTTCTGCATTGTAAACAATCTCAAGCTGGAGTTGTCTTCGGCGGACGAGCTTTTCTCCAATGGGAAGATTCTCCCCGTCCAAATCAAGAGAAATCTCGCCGCCGCCGAAGAAACTCACCAGCCTGAAGAGAAAACAGTTACTCGTCAGGCTGATGATGAGAGGGCAGCTCCTCCTACCCTTGCTCATCGCTCAACACCTATAAAAACAGAGAGGCTAAAATCAGATGAGAAGAAGAAGAGGTTGAAAGAATTTTTAGACGCCAATGCCGATGCAGATGAAACCGACAAGCCTCCAACAGCAAAGCCATTCTGGCAGTTCCGGCGGAGCAGCAGTCTCAACTGCGACGCTGCTCGCGGCAAGAGCCTAATCCGGCCGCTTCAGTTTCTTTCGAGAAGCAACTCAACAGGGTCGGCTCCAAAACCAAATCAAAAGCAAGCGTTGCCTCCAAAGGAAACAACAACAACAACTCATCAGAAGCAGCAGCAGCATTTGCAGAAACAGACATCGGTTTCGAGCCGAAGATCATCGTCTGCCTCGTGTTCGAGTACGTATTATCCTTACAACAACATGAACCAGAAGCCGGCGTTGAGAAAGAGTGGATCTCACGGCAATGGGGTCAGAATCAGCCCTGTTCTGAATCTCCCACCGCCTTACATTTCCAAAGTTACTGGGAGTTTTTTCGGGTTCGGTTCTCTCTTCTGTAACGGTAAATTTAGAAAGAAGAAGAAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF1645

Protein Analysis

293

Amino Acids

32.52

Weight (kDa)

9.76

Isoelectric Point (pI)

51.84

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0016536)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G68330
fragaria_vesca FvH4_4g27060
malus_domestica MD13G1039600.v1.1 MD16G1040500.v1.1
prunus_persica Prupe.1G313600_v2.0.a1
rosa_chinensis RchiOBHm_Chr4g0434861
rosa_laevigata RLG00000006640
rosa_multiflora Rmu_sc0003726.1_g000002
rosa_roxburghii Rroxscaffold_5G00376070
rosa_rugosa Rorug04G0279700
rosa_samantha Rh4AG335500 Rh4BG344000 Rh4DG338000
rosa_wichuraiana Rw4G029270

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 70
AccII CGCG 1 cut(s) 501
AciI CCGC 7 cut(s) 188, 246, 249, 469, 501, 521, 794
AclWI GGATC 1 cut(s) 754
AcoI YGGCCR 2 cut(s) 3, 518
AcsI RAATTY 3 cut(s) 51, 395, 857
AcuI CTGAAG 2 cut(s) 291, 509
AcyI GRCGYC 1 cut(s) 405
AfaI GTAC 1 cut(s) 694
AfiI CCNNNNNNNGG 3 cut(s) 70, 98, 727
AgsI TTSAA 1 cut(s) 391
AluBI AGCT 3 cut(s) 172, 196, 314
AluI AGCT 3 cut(s) 172, 196, 314
Alw26I GTCTC 1 cut(s) 485
AlwI GGATC 1 cut(s) 754
AoxI GGCC 2 cut(s) 3, 518
ApeKI GCWGC 6 cut(s) 311, 474, 494, 625, 628, 631
ApoI RAATTY 3 cut(s) 51, 395, 857
ArsI GACNNNNNNTTYG 2 cut(s) 640, 672
AsuC2I CCSGG 1 cut(s) 36
AsuHPI GGTGA 1 cut(s) 254
BalI TGGCCA 1 cut(s) 5
BanII GRGCYC 1 cut(s) 35
BauI CACGAG 1 cut(s) 682
BbsI GAAGAC 1 cut(s) 174
BbvI GCAGC 6 cut(s) 323, 481, 486, 637, 640, 643
BceAI ACGGC 1 cut(s) 769
BcnI CCSGG 1 cut(s) 36
BcoDI GTCTC 1 cut(s) 485
BglI GCCNNNNNGGC 1 cut(s) 457
Bme1390I CCNGG 1 cut(s) 36
BmiI GGNNCC 2 cut(s) 32, 561
BmrFI CCNGG 1 cut(s) 36
BmrI ACTGGG 1 cut(s) 825
BmsI GCATC 1 cut(s) 406
BmuI ACTGGG 1 cut(s) 825
BpiI GAAGAC 1 cut(s) 174
BplI GAGNNNNNCTC 7 cut(s) 34, 185, 217, 298, 330, 733, 765
BpmI CTGGAG 1 cut(s) 194
BpuEI CTTGAG 1 cut(s) 152
BpuMI CCSGG 1 cut(s) 36
BsaAI YACGTR 1 cut(s) 696
BsaHI GRCGYC 1 cut(s) 405
BsaJI CCNNGG 1 cut(s) 34
BsaXI ACNNNNNCTCC 2 cut(s) 463, 493
Bsc4I CCNNNNNNNGG 3 cut(s) 70, 98, 727
Bse118I RCCGGY 1 cut(s) 727
Bse1I ACTGG 1 cut(s) 820
Bse3DI GCAATG 1 cut(s) 763
BseDI CCNNGG 1 cut(s) 34
BseLI CCNNNNNNNGG 3 cut(s) 70, 98, 727
BseMI GCAATG 1 cut(s) 763
BseNI ACTGG 1 cut(s) 820
BseRI GAGGAG 2 cut(s) 106, 306
BseX3I CGGCCG 1 cut(s) 518
BseXI GCAGC 6 cut(s) 323, 481, 486, 637, 640, 643
Bsh1236I CGCG 1 cut(s) 501
Bsh1285I CGRYCG 1 cut(s) 521
BshFI GGCC 2 cut(s) 5, 520
BsiEI CGRYCG 1 cut(s) 521
BsiSI CCGG 4 cut(s) 36, 466, 517, 728
BslI CCNNNNNNNGG 3 cut(s) 70, 98, 727
BsmAI GTCTC 1 cut(s) 485
BsnI GGCC 2 cut(s) 5, 520
Bsp1286I GDGCHC 1 cut(s) 35
Bsp143I GATC 3 cut(s) 67, 668, 746
BspACI CCGC 7 cut(s) 188, 246, 249, 469, 501, 521, 794
BspANI GGCC 2 cut(s) 5, 520
BspFNI CGCG 1 cut(s) 501
BspLI GGNNCC 2 cut(s) 32, 561
BspPI GGATC 1 cut(s) 754
BsrDI GCAATG 1 cut(s) 763
BsrFI RCCGGY 1 cut(s) 727
BsrI ACTGG 1 cut(s) 820
BssAI RCCGGY 1 cut(s) 727
BssECI CCNNGG 1 cut(s) 34
BssMI GATC 3 cut(s) 67, 668, 746
BssNI GRCGYC 1 cut(s) 405
BssSI CACGAG 1 cut(s) 682
Bst2BI CACGAG 1 cut(s) 682
Bst4CI ACNGT 3 cut(s) 108, 283, 854
Bst6I CTCTTC 3 cut(s) 267, 377, 848
BstACI GRCGYC 1 cut(s) 405
BstAPI GCANNNNNTGC 2 cut(s) 586, 637
BstBAI YACGTR 1 cut(s) 696
BstC8I GCNNGC 3 cut(s) 499, 582, 729
BstFNI CGCG 1 cut(s) 501
BstKTI GATC 3 cut(s) 70, 671, 749
BstMAI GTCTC 1 cut(s) 485
BstMBI GATC 3 cut(s) 67, 668, 746
BstMCI CGRYCG 1 cut(s) 521
BstMWI GCNNNNNNNGC 6 cut(s) 457, 466, 507, 586, 631, 637
BstSCI CCNGG 1 cut(s) 34
BstSNI TACGTA 1 cut(s) 696
BstUI CGCG 1 cut(s) 501
BstV1I GCAGC 6 cut(s) 323, 481, 486, 637, 640, 643
BstV2I GAAGAC 1 cut(s) 174
BstX2I RGATCY 1 cut(s) 746
BstYI RGATCY 1 cut(s) 746
BstZI CGGCCG 1 cut(s) 518
BsuRI GGCC 2 cut(s) 5, 520
BtgZI GCGATG 1 cut(s) 317
BtsI GCAGTG 1 cut(s) 132
BtsIMutI CAGTG 1 cut(s) 132
Cac8I GCNNGC 3 cut(s) 499, 582, 729
Cfr10I RCCGGY 1 cut(s) 727
CseI GACGC 2 cut(s) 413, 500
Csp6I GTAC 1 cut(s) 693
CviAII CATG 3 cut(s) 65, 86, 715
CviQI GTAC 1 cut(s) 693
DpnI GATC 3 cut(s) 69, 670, 748
DpnII GATC 3 cut(s) 67, 668, 746
EaeI YGGCCR 2 cut(s) 3, 518
EagI CGGCCG 1 cut(s) 518
Eam1104I CTCTTC 3 cut(s) 267, 377, 848
EarI CTCTTC 3 cut(s) 267, 377, 848
EciI GGCGGA 2 cut(s) 203, 484
EclXI CGGCCG 1 cut(s) 518
Eco105I TACGTA 1 cut(s) 696
Eco24I GRGCYC 1 cut(s) 35
Eco52I CGGCCG 1 cut(s) 518
Eco57I CTGAAG 2 cut(s) 291, 509
EcoT38I GRGCYC 1 cut(s) 35
FaeI CATG 3 cut(s) 68, 89, 718
FaiI YATR 4 cut(s) 66, 87, 347, 716
FatI CATG 3 cut(s) 64, 85, 714
FriOI GRGCYC 1 cut(s) 35
GsuI CTGGAG 1 cut(s) 194
HaeIII GGCC 2 cut(s) 5, 520
HapII CCGG 4 cut(s) 36, 466, 517, 728
HgaI GACGC 2 cut(s) 413, 500
Hin1I GRCGYC 1 cut(s) 405
Hin1II CATG 3 cut(s) 68, 89, 718
HinfI GANTC 7 cut(s) 39, 82, 113, 128, 214, 768, 784
HpaII CCGG 4 cut(s) 36, 466, 517, 728
HphI GGTGA 1 cut(s) 254
Hpy166II GTNNAC 1 cut(s) 160
Hpy188I TCNGA 7 cut(s) 22, 93, 127, 370, 621, 767, 783
Hpy188III TCNNGA 3 cut(s) 71, 232, 537
Hpy8I GTNNAC 1 cut(s) 160
Hpy99I CGWCG 1 cut(s) 494
HpyCH4III ACNGT 3 cut(s) 108, 283, 854
HpyCH4IV ACGT 1 cut(s) 695
HpyCH4V TGCA 3 cut(s) 153, 419, 640
HpyF10VI GCNNNNNNNGC 6 cut(s) 457, 466, 507, 586, 631, 637
HpySE526I ACGT 1 cut(s) 695
Hsp92I GRCGYC 1 cut(s) 405
Hsp92II CATG 3 cut(s) 68, 89, 718
KroI GCCGGC 1 cut(s) 727
KroNI GCCGGC 1 cut(s) 729
Kzo9I GATC 3 cut(s) 67, 668, 746
LmnI GCTCC 5 cut(s) 30, 94, 319, 471, 565
Lsp1109I GCAGC 6 cut(s) 323, 481, 486, 637, 640, 643
LweI GCATC 1 cut(s) 406
MaeII ACGT 1 cut(s) 695
MaeIII GTNAC 3 cut(s) 283, 811, 848
MalI GATC 3 cut(s) 69, 670, 748
MboI GATC 3 cut(s) 67, 668, 746
MboII GAAGA 9 cut(s) 174, 223, 266, 284, 388, 391, 394, 678, 835
MflI RGATCY 1 cut(s) 746
MhlI GDGCHC 1 cut(s) 35
MlsI TGGCCA 1 cut(s) 5
MluCI AATT 3 cut(s) 51, 395, 857
MluNI TGGCCA 1 cut(s) 5
MlyI GAGTC 1 cut(s) 107
MmeI TCCRAC 1 cut(s) 464
MnlI CCTC 9 cut(s) 4, 127, 300, 327, 351, 378, 447, 600, 691
Mox20I TGGCCA 1 cut(s) 5
MroNI GCCGGC 1 cut(s) 727
MscI TGGCCA 1 cut(s) 5
MslI CAYNNNNRTG 1 cut(s) 756
Msp20I TGGCCA 1 cut(s) 5
MspI CCGG 4 cut(s) 36, 466, 517, 728
MspR9I CCNGG 1 cut(s) 36
MvnI CGCG 1 cut(s) 501
MwoI GCNNNNNNNGC 6 cut(s) 457, 466, 507, 586, 631, 637
NaeI GCCGGC 1 cut(s) 729
NciI CCSGG 1 cut(s) 36
NdeII GATC 3 cut(s) 67, 668, 746
NgoMIV GCCGGC 1 cut(s) 727
NlaIII CATG 3 cut(s) 68, 89, 718
NlaIV GGNNCC 2 cut(s) 32, 561
PcsI WCGNNNNNNNCGW 3 cut(s) 249, 411, 680
PdiI GCCGGC 1 cut(s) 729
PfeI GAWTC 6 cut(s) 39, 82, 128, 214, 768, 784
PflMI CCANNNNNTGG 1 cut(s) 70
PleI GAGTC 1 cut(s) 107
PpsI GAGTC 1 cut(s) 107
Ppu21I YACGTR 1 cut(s) 696
PspN4I GGNNCC 2 cut(s) 32, 561
PsuI RGATCY 1 cut(s) 746
RsaI GTAC 1 cut(s) 694
RsaNI GTAC 1 cut(s) 693
RseI CAYNNNNRTG 1 cut(s) 756
Sau3AI GATC 3 cut(s) 67, 668, 746
SchI GAGTC 1 cut(s) 107
ScrFI CCNGG 1 cut(s) 36
SduI GDGCHC 1 cut(s) 35
SetI ASST 7 cut(s) 15, 174, 198, 316, 346, 389, 698
SfaNI GCATC 1 cut(s) 406
SmiMI CAYNNNNRTG 1 cut(s) 756
SmlI CTYRAG 1 cut(s) 167
SmoI CTYRAG 1 cut(s) 167
SnaBI TACGTA 1 cut(s) 696
Sse9I AATT 3 cut(s) 51, 395, 857
SsiI CCGC 7 cut(s) 188, 246, 249, 469, 501, 521, 794
StyD4I CCNGG 1 cut(s) 34
TaaI ACNGT 3 cut(s) 108, 283, 854
TaiI ACGT 1 cut(s) 698
TaqI TCGA 4 cut(s) 144, 536, 659, 689
TasI AATT 3 cut(s) 51, 395, 857
TauI GCSGC 4 cut(s) 248, 251, 504, 523
TfiI GAWTC 6 cut(s) 39, 82, 128, 214, 768, 784
TscAI CASTG 1 cut(s) 139
TseI GCWGC 6 cut(s) 311, 474, 494, 625, 628, 631
TspDTI ATGAA 3 cut(s) 45, 438, 731
TspRI CASTG 1 cut(s) 139
Van91I CCANNNNNTGG 1 cut(s) 70
XapI RAATTY 3 cut(s) 51, 395, 857
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.