RLG00000006640

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr2
OG0016536
Physical Location & Seq
Forward (+)
9285736 .. 9286572
837 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000006640

Sequence Viewer

Length: 837 bp
ATGGCCATCGAGGTGTGCTCGGAGATTTCCAGCCCCGTATTTAGTCCAAGGATTTCGTTTTCTCATGATCTCGACAAGGCAAACGTTACGGTGACAAAAGAAGAGCAGCCACAACAACGGTTAGACTCATCTCTGGTGGATTCAAGTTCTGATTTCGACTTCTGCATAGTCAATAATATCAAGCTAGAGCTGTCTTCGGCCGACGAGCTTTTCTCCAATGGCAAGATTCTTCCTGTCCAAATCAAGCCAAATCCCAACACCACCGCCACCAAAGAAGCGCTTCTTCAGCCTCCTCATCAATTCGCAACAAAGAACACAGAGAAAAAGAGACTGAAGGAGTTCTTAGACGACAGCAATGCCGAAGATGAAACTAATGAAAATGATGAGAAGCCTGCGATTGCAAAGCCCTCCTGGCAATTCAGGAGAAGCAGCAGCCTCAATTTCGATAGTACTACTACCGCTCGCGGTATGAGCTTAATCCGATCACTCCATTTTCTTTCGAGAAGCAACTCAACCGGATCAGCTCCAAATCCAAAGCAAACAGTTACCCCAAATCAAAAGCAGCAGCATTTGCGGAAAAACCAATCTACCAACTCAAGAAGAAGATCATCATCAGCATCATCATCATCATGTTCAAGTAGCACTACATATTATCCTTACAACACTTCACCGCGGTCACAAAAGCCTTCGTTAAGGAAGAGTGGATCTTACGGCAATGGGGTAAGAATTAGTCCAGTCCTGAATCTCCCACCACCTTACATTTCAAAAGTTACCGTGAGTTTTTTCGGGTTCGGATCTCTCTTCTGTAATGGTAAGTTGAAAAGGAAGAAGAAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF1645

Protein Analysis

279

Amino Acids

30.89

Weight (kDa)

9.72

Isoelectric Point (pI)

63.4

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0016536)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G68330
fragaria_vesca FvH4_4g27060
malus_domestica MD13G1039600.v1.1 MD16G1040500.v1.1
prunus_persica Prupe.1G313600_v2.0.a1
rosa_chinensis RchiOBHm_Chr4g0434861
rosa_laevigata RLG00000006640
rosa_multiflora Rmu_sc0003726.1_g000002
rosa_roxburghii Rroxscaffold_5G00376070
rosa_rugosa Rorug04G0279700
rosa_samantha Rh4AG335500 Rh4BG344000 Rh4DG338000
rosa_wichuraiana Rw4G029270

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 461
AccII CGCG 2 cut(s) 465, 673
AciI CCGC 6 cut(s) 264, 459, 465, 574, 671, 673
AclI AACGTT 1 cut(s) 84
AclWI GGATC 3 cut(s) 526, 712, 802
AcoI YGGCCR 2 cut(s) 3, 198
AcuI CTGAAG 2 cut(s) 269, 353
AfaI GTAC 1 cut(s) 451
AfeI AGCGCT 1 cut(s) 279
AgsI TTSAA 4 cut(s) 144, 636, 765, 820
AjnI CCWGG 1 cut(s) 410
AluBI AGCT 5 cut(s) 184, 190, 208, 474, 524
AluI AGCT 5 cut(s) 184, 190, 208, 474, 524
Alw21I GWGCWC 1 cut(s) 20
Alw26I GTCTC 1 cut(s) 322
AlwI GGATC 3 cut(s) 526, 712, 802
Aor51HI AGCGCT 1 cut(s) 279
AoxI GGCC 2 cut(s) 3, 198
ApeKI GCWGC 5 cut(s) 106, 429, 432, 562, 565
Asp700I GAANNNNTTC 2 cut(s) 279, 338
AspLEI GCGC 1 cut(s) 280
AsuHPI GGTGA 2 cut(s) 103, 660
BalI TGGCCA 1 cut(s) 5
BbsI GAAGAC 1 cut(s) 186
Bbv12I GWGCWC 1 cut(s) 20
BbvI GCAGC 5 cut(s) 118, 441, 444, 574, 577
BccI CCATC 1 cut(s) 14
BceAI ACGGC 1 cut(s) 727
BcgI CGANNNNNNTGC 2 cut(s) 338, 372
BciT130I CCWGG 1 cut(s) 412
BcoDI GTCTC 1 cut(s) 322
BfaI CTAG 1 cut(s) 185
BfoI RGCGCY 1 cut(s) 281
BglI GCCNNNNNGGC 1 cut(s) 412
BisI GCNGC 5 cut(s) 107, 430, 433, 563, 566
BlsI GCNGC 5 cut(s) 108, 431, 434, 564, 567
BmcAI AGTACT 1 cut(s) 451
Bme1390I CCNGG 1 cut(s) 412
BmrFI CCNGG 1 cut(s) 412
BmsI GCATC 1 cut(s) 626
BpiI GAAGAC 1 cut(s) 186
BplI GAGNNNNNCTC 3 cut(s) 34, 197, 229
BpuEI CTTGAG 1 cut(s) 580
BsaBI GATNNNNATC 1 cut(s) 610
BsaJI CCNNGG 2 cut(s) 47, 671
BsaWI WCCGGW 1 cut(s) 515
Bse1I ACTGG 1 cut(s) 734
Bse3DI GCAATG 2 cut(s) 361, 721
Bse8I GATNNNNATC 1 cut(s) 610
BseBI CCWGG 1 cut(s) 412
BseDI CCNNGG 2 cut(s) 47, 671
BseJI GATNNNNATC 1 cut(s) 610
BseMI GCAATG 2 cut(s) 361, 721
BseNI ACTGG 1 cut(s) 734
BseRI GAGGAG 1 cut(s) 282
BseX3I CGGCCG 1 cut(s) 198
BseXI GCAGC 5 cut(s) 118, 441, 444, 574, 577
Bsh1236I CGCG 2 cut(s) 465, 673
Bsh1285I CGRYCG 1 cut(s) 201
BshFI GGCC 2 cut(s) 5, 200
BsiEI CGRYCG 1 cut(s) 201
BsiHKAI GWGCWC 1 cut(s) 20
BsiSI CCGG 1 cut(s) 516
BsmAI GTCTC 1 cut(s) 322
BsnI GGCC 2 cut(s) 5, 200
Bsp1286I GDGCHC 1 cut(s) 20
Bsp143I GATC 6 cut(s) 67, 482, 518, 605, 704, 794
BspACI CCGC 6 cut(s) 264, 459, 465, 574, 671, 673
BspANI GGCC 2 cut(s) 5, 200
BspFNI CGCG 2 cut(s) 465, 673
BspHI TCATGA 1 cut(s) 64
BspPI GGATC 3 cut(s) 526, 712, 802
BspQI GCTCTTC 1 cut(s) 96
BsrBI CCGCTC 1 cut(s) 461
BsrDI GCAATG 2 cut(s) 361, 721
BsrI ACTGG 1 cut(s) 734
BssECI CCNNGG 2 cut(s) 47, 671
BssMI GATC 6 cut(s) 67, 482, 518, 605, 704, 794
BssT1I CCWWGG 1 cut(s) 47
Bst2UI CCWGG 1 cut(s) 412
Bst4CI ACNGT 4 cut(s) 91, 120, 544, 775
Bst6I CTCTTC 3 cut(s) 96, 692, 806
BstAPI GCANNNNNTGC 1 cut(s) 571
BstC8I GCNNGC 2 cut(s) 393, 463
BstDEI CTNAG 1 cut(s) 343
BstDSI CCRYGG 1 cut(s) 671
BstFNI CGCG 2 cut(s) 465, 673
BstH2I RGCGCY 1 cut(s) 281
BstHHI GCGC 1 cut(s) 280
BstKTI GATC 6 cut(s) 70, 485, 521, 608, 707, 797
BstMAI GTCTC 1 cut(s) 322
BstMBI GATC 6 cut(s) 67, 482, 518, 605, 704, 794
BstMCI CGRYCG 1 cut(s) 201
BstMWI GCNNNNNNNGC 4 cut(s) 286, 412, 471, 571
BstNI CCWGG 1 cut(s) 412
BstSCI CCNGG 1 cut(s) 410
BstUI CGCG 2 cut(s) 465, 673
BstV1I GCAGC 5 cut(s) 118, 441, 444, 574, 577
BstV2I GAAGAC 1 cut(s) 186
BstX2I RGATCY 2 cut(s) 704, 794
BstYI RGATCY 2 cut(s) 704, 794
BstZI CGGCCG 1 cut(s) 198
BsuRI GGCC 2 cut(s) 5, 200
BtgI CCRYGG 1 cut(s) 671
Cac8I GCNNGC 2 cut(s) 393, 463
CciI TCATGA 1 cut(s) 64
CfoI GCGC 1 cut(s) 280
Cfr42I CCGCGG 1 cut(s) 674
Csp6I GTAC 1 cut(s) 450
CviAII CATG 2 cut(s) 65, 630
CviQI GTAC 1 cut(s) 450
DdeI CTNAG 1 cut(s) 343
DpnI GATC 6 cut(s) 69, 484, 520, 607, 706, 796
DpnII GATC 6 cut(s) 67, 482, 518, 605, 704, 794
EaeI YGGCCR 2 cut(s) 3, 198
EagI CGGCCG 1 cut(s) 198
Eam1104I CTCTTC 3 cut(s) 96, 692, 806
EarI CTCTTC 3 cut(s) 96, 692, 806
EclXI CGGCCG 1 cut(s) 198
Eco130I CCWWGG 1 cut(s) 47
Eco47III AGCGCT 1 cut(s) 279
Eco52I CGGCCG 1 cut(s) 198
Eco57I CTGAAG 2 cut(s) 269, 353
EcoRII CCWGG 1 cut(s) 410
EcoT14I CCWWGG 1 cut(s) 47
ErhI CCWWGG 1 cut(s) 47
FaeI CATG 2 cut(s) 68, 633
FaiI YATR 5 cut(s) 66, 167, 470, 631, 649
FalI AAGNNNNNCTT 6 cut(s) 264, 296, 267, 299, 326, 358
FatI CATG 2 cut(s) 64, 629
Fnu4HI GCNGC 5 cut(s) 107, 430, 433, 563, 566
Fsp4HI GCNGC 5 cut(s) 107, 430, 433, 563, 566
FspBI CTAG 1 cut(s) 185
GlaI GCGC 1 cut(s) 279
GluI GCNGC 5 cut(s) 107, 430, 433, 563, 566
HaeII RGCGCY 1 cut(s) 281
HaeIII GGCC 2 cut(s) 5, 200
HapII CCGG 1 cut(s) 516
HhaI GCGC 1 cut(s) 280
Hin1II CATG 2 cut(s) 68, 633
Hin6I GCGC 1 cut(s) 278
HinP1I GCGC 1 cut(s) 278
HinfI GANTC 4 cut(s) 125, 140, 226, 742
HpaII CCGG 1 cut(s) 516
HphI GGTGA 2 cut(s) 103, 660
Hpy188I TCNGA 4 cut(s) 22, 151, 482, 794
Hpy188III TCNNGA 6 cut(s) 65, 71, 421, 501, 597, 739
Hpy99I CGWCG 1 cut(s) 206
HpyAV CCTTC 2 cut(s) 328, 696
HpyCH4III ACNGT 4 cut(s) 91, 120, 544, 775
HpyCH4IV ACGT 1 cut(s) 84
HpyCH4V TGCA 2 cut(s) 165, 401
HpyF10VI GCNNNNNNNGC 4 cut(s) 286, 412, 471, 571
HpyF3I CTNAG 1 cut(s) 343
HpySE526I ACGT 1 cut(s) 84
Hsp92II CATG 2 cut(s) 68, 633
HspAI GCGC 1 cut(s) 278
KspI CCGCGG 1 cut(s) 674
Kzo9I GATC 6 cut(s) 67, 482, 518, 605, 704, 794
LguI GCTCTTC 1 cut(s) 96
LmnI GCTCC 1 cut(s) 529
Lsp1109I GCAGC 5 cut(s) 118, 441, 444, 574, 577
LweI GCATC 1 cut(s) 626
MaeI CTAG 1 cut(s) 185
MaeII ACGT 1 cut(s) 84
MaeIII GTNAC 5 cut(s) 85, 91, 544, 675, 769
MalI GATC 6 cut(s) 69, 484, 520, 607, 706, 796
MbiI CCGCTC 1 cut(s) 461
MboI GATC 6 cut(s) 67, 482, 518, 605, 704, 794
MboII GAAGA 9 cut(s) 113, 186, 221, 275, 374, 612, 615, 709, 793
MflI RGATCY 2 cut(s) 704, 794
MhlI GDGCHC 1 cut(s) 20
MlsI TGGCCA 1 cut(s) 5
MluCI AATT 4 cut(s) 299, 416, 439, 726
MluNI TGGCCA 1 cut(s) 5
MlyI GAGTC 1 cut(s) 119
MnlI CCTC 5 cut(s) 4, 300, 303, 418, 446
Mox20I TGGCCA 1 cut(s) 5
MroXI GAANNNNTTC 2 cut(s) 279, 338
MscI TGGCCA 1 cut(s) 5
MseI TTAA 2 cut(s) 476, 692
MslI CAYNNNNRTG 2 cut(s) 11, 628
Msp20I TGGCCA 1 cut(s) 5
MspA1I CMGCKG 1 cut(s) 673
MspI CCGG 1 cut(s) 516
MspR9I CCNGG 1 cut(s) 412
MvaI CCWGG 1 cut(s) 412
MvnI CGCG 2 cut(s) 465, 673
MwoI GCNNNNNNNGC 4 cut(s) 286, 412, 471, 571
NdeII GATC 6 cut(s) 67, 482, 518, 605, 704, 794
NlaIII CATG 2 cut(s) 68, 633
NmuCI GTSAC 2 cut(s) 91, 675
PagI TCATGA 1 cut(s) 64
PciSI GCTCTTC 1 cut(s) 96
PdmI GAANNNNTTC 2 cut(s) 279, 338
PfeI GAWTC 3 cut(s) 140, 226, 742
PkrI GCNGC 5 cut(s) 108, 431, 434, 564, 567
PleI GAGTC 1 cut(s) 119
PpsI GAGTC 1 cut(s) 119
Psp1406I AACGTT 1 cut(s) 84
Psp6I CCWGG 1 cut(s) 410
PspGI CCWGG 1 cut(s) 410
PsuI RGATCY 2 cut(s) 704, 794
RsaI GTAC 1 cut(s) 451
RsaNI GTAC 1 cut(s) 450
RseI CAYNNNNRTG 2 cut(s) 11, 628
SacII CCGCGG 1 cut(s) 674
SapI GCTCTTC 1 cut(s) 96
SaqAI TTAA 2 cut(s) 476, 692
SatI GCNGC 5 cut(s) 107, 430, 433, 563, 566
Sau3AI GATC 6 cut(s) 67, 482, 518, 605, 704, 794
ScaI AGTACT 1 cut(s) 451
SchI GAGTC 1 cut(s) 119
ScrFI CCNGG 1 cut(s) 412
SduI GDGCHC 1 cut(s) 20
SetI ASST 8 cut(s) 15, 87, 186, 192, 210, 476, 526, 757
SfaNI GCATC 1 cut(s) 626
Sfr303I CCGCGG 1 cut(s) 674
SgrBI CCGCGG 1 cut(s) 674
SmiMI CAYNNNNRTG 2 cut(s) 11, 628
SmlI CTYRAG 1 cut(s) 595
SmoI CTYRAG 1 cut(s) 595
Sse9I AATT 4 cut(s) 299, 416, 439, 726
SsiI CCGC 6 cut(s) 264, 459, 465, 574, 671, 673
SspMI CTAG 1 cut(s) 185
StyD4I CCNGG 1 cut(s) 410
StyI CCWWGG 1 cut(s) 47
TaaI ACNGT 4 cut(s) 91, 120, 544, 775
TaiI ACGT 1 cut(s) 87
TaqI TCGA 5 cut(s) 9, 72, 156, 444, 500
TasI AATT 4 cut(s) 299, 416, 439, 726
TatI WGTACW 1 cut(s) 449
TfiI GAWTC 3 cut(s) 140, 226, 742
Tru1I TTAA 2 cut(s) 476, 692
Tru9I TTAA 2 cut(s) 476, 692
TseFI GTSAC 2 cut(s) 91, 675
TseI GCWGC 5 cut(s) 106, 429, 432, 562, 565
Tsp45I GTSAC 2 cut(s) 91, 675
TspDTI ATGAA 2 cut(s) 381, 390
XmnI GAANNNNTTC 2 cut(s) 279, 338
XspI CTAG 1 cut(s) 185
ZrmI AGTACT 1 cut(s) 451
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.