Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb4

Orthogroup ID

OG0009322

Physical Location & Seq

Genomic Coordinates Forward (+)

28613018 .. 28615954

Gene Structure 2937 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_4g27780.t2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 672 bp

ATGAGCACCGTCATCCAGGGTTTCACCAAGTCACTTGCCATGACTGTGCTCTCCGAGATCGGCGACAAGACCTTCTTCGCCGCCGCGATCCTTGCGATGCGCCATCCCAGGAGACTCGTGTTGTCTGGTTGCCTAGGAGCTCTAATTGTGATGACTATTCTTTCTGTTCTGGTTGGCTGGGCTGCTCCAAATTTGCTCTCGCGGACATGGACCCATCACATAACAACAGTGTTGTTCTTTGGGTTTGGCCTATGGTCCTTATGGGATGCTTTTAAAGGAGAAGGGGGGGATGATGAATTTGCAGAAGTTGAAGCGGAATTGGATGCCAAGGCAGGATCCACCAAACAGAGTAGTAAGGATGACGATGATTTGAAAAAGCAGAATCGTTCATTTATCTTGCAATTCTTCTCACCCATTTTTTTAAAGGCCTTCTCTATTACTTTTTTCGGTGAATGGGGTGACAAGAGCCAGCTAGCTACTATTGGTTTGGCTGCAGATGAAAACCCATTAGGTGTGGTTATCGGTGGAATCATAGGACAAGCGTTGTGTACCACTGCTGCTGTCCTTGGTGGAAAGAGCTTGGCATCTCAGATATCTGAGAAAATTGTTGCATTATCAGGTGGAATTCTTTTCATTGTTTTCGGAATTCAATCCTTCCTTTCAACAGTTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0008150 GO:0009628 GO:0050896 GO:0080167

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

UPF0016

Protein Analysis

224

Amino Acids

23.86

Weight (kDa)

5.6

Isoelectric Point (pI)

35.35

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
GDT1	PF01169	10 - 83	1.4e-19	Divalent cation/proton antiporter GDT1
GDT1	PF01169	142 - 203	1.9e-19	Divalent cation/proton antiporter GDT1

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0009322)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G25520 AT1G68650
fragaria_vesca	FvH4_4g27780 FvH4_4g27780 FvH4_4g27780 FvH4_4g27780
malus_domestica	MD13G1045000.v1.1 MD16G1046300.v1.1
prunus_persica	Prupe.1G306900_v2.0.a1 Prupe.1G306900_v2.0.a1
pyrus_communis	pycom13g03980 pycom16g04090
rosa_chinensis	RchiOBHm_Chr4g0435641
rosa_laevigata	RLG00000006574
rosa_multiflora	Rmu_sc0000051.1_g000008
rosa_roxburghii	Rroxscaffold_5G00376860
rosa_rugosa	Rorug04G0287600
rosa_samantha	Rh4AG342700 Rh4BG351100 Rh4CG365700 Rh4DG345400
rosa_wichuraiana	Rw4G029910

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	2 cut(s)	86, 202
AciI	CCGC	4 cut(s)	81, 84, 202, 314
AclWI	GGATC	3 cut(s)	82, 330, 343
AcsI	RAATTY	4 cut(s)	190, 296, 624, 645
AfaI	GTAC	1 cut(s)	550
AgsI	TTSAA	4 cut(s)	311, 373, 650, 663
AjnI	CCWGG	2 cut(s)	15, 107
AluBI	AGCT	4 cut(s)	140, 472, 476, 579
AluI	AGCT	4 cut(s)	140, 472, 476, 579
Alw21I	GWGCWC	3 cut(s)	8, 51, 142
Alw26I	GTCTC	1 cut(s)	106
AlwI	GGATC	3 cut(s)	82, 330, 343
AoxI	GGCC	2 cut(s)	247, 426
ApeKI	GCWGC	3 cut(s)	182, 491, 557
ApoI	RAATTY	4 cut(s)	190, 296, 624, 645
AspA2I	CCTAGG	1 cut(s)	133
AspLEI	GCGC	1 cut(s)	102
AspS9I	GGNCC	2 cut(s)	210, 255
AsuHPI	GGTGA	4 cut(s)	16, 402, 461, 470
AsuNHI	GCTAGC	1 cut(s)	472
AvaII	GGWCC	2 cut(s)	210, 255
AvrII	CCTAGG	1 cut(s)	133
BamHI	GGATCC	1 cut(s)	335
BanII	GRGCYC	1 cut(s)	142
BauI	CACGAG	1 cut(s)	116
Bbv12I	GWGCWC	3 cut(s)	8, 51, 142
BbvI	GCAGC	3 cut(s)	169, 478, 544
BccI	CCATC	2 cut(s)	111, 222
BciT130I	CCWGG	2 cut(s)	17, 109
BcoDI	GTCTC	1 cut(s)	106
BfaI	CTAG	2 cut(s)	134, 473
BfmI	CTRYAG	1 cut(s)	492
BisI	GCNGC	5 cut(s)	81, 84, 183, 492, 558
BlnI	CCTAGG	1 cut(s)	133
BlsI	GCNGC	5 cut(s)	82, 85, 184, 493, 559
Bme1390I	CCNGG	2 cut(s)	17, 109
Bme18I	GGWCC	2 cut(s)	210, 255
BmgT120I	GGNCC	2 cut(s)	210, 255
BmiI	GGNNCC	2 cut(s)	212, 337
BmrFI	CCNGG	2 cut(s)	17, 109
BmsI	GCATC	4 cut(s)	87, 256, 313, 593
BmtI	GCTAGC	1 cut(s)	476
BsaJI	CCNNGG	5 cut(s)	16, 107, 133, 327, 565
BseBI	CCWGG	2 cut(s)	17, 109
BseDI	CCNNGG	5 cut(s)	16, 107, 133, 327, 565
BseGI	GGATG	6 cut(s)	12, 103, 271, 295, 328, 364
BseMII	CTCAG	2 cut(s)	588, 602
BseXI	GCAGC	3 cut(s)	169, 478, 544
BseYI	CCCAGC	1 cut(s)	177
Bsh1236I	CGCG	2 cut(s)	86, 202
BshFI	GGCC	2 cut(s)	249, 428
BsiHKAI	GWGCWC	3 cut(s)	8, 51, 142
BsmAI	GTCTC	1 cut(s)	106
BsnI	GGCC	2 cut(s)	249, 428
Bsp1286I	GDGCHC	3 cut(s)	8, 51, 142
Bsp143I	GATC	3 cut(s)	57, 87, 335
BspACI	CCGC	4 cut(s)	81, 84, 202, 314
BspANI	GGCC	2 cut(s)	249, 428
BspCNI	CTCAG	2 cut(s)	589, 601
BspFNI	CGCG	2 cut(s)	86, 202
BspLI	GGNNCC	2 cut(s)	212, 337
BspMAI	CTGCAG	1 cut(s)	496
BspOI	GCTAGC	1 cut(s)	476
BspPI	GGATC	3 cut(s)	82, 330, 343
BssECI	CCNNGG	5 cut(s)	16, 107, 133, 327, 565
BssMI	GATC	3 cut(s)	57, 87, 335
BssSI	CACGAG	1 cut(s)	116
BssT1I	CCWWGG	3 cut(s)	133, 327, 565
Bst2BI	CACGAG	1 cut(s)	116
Bst2UI	CCWGG	2 cut(s)	17, 109
Bst4CI	ACNGT	4 cut(s)	10, 46, 229, 667
BstC8I	GCNNGC	2 cut(s)	470, 474
BstDEI	CTNAG	2 cut(s)	588, 597
BstF5I	GGATG	6 cut(s)	12, 103, 271, 295, 328, 364
BstFNI	CGCG	2 cut(s)	86, 202
BstHHI	GCGC	1 cut(s)	102
BstKTI	GATC	3 cut(s)	60, 90, 338
BstMAI	GTCTC	1 cut(s)	106
BstMBI	GATC	3 cut(s)	57, 87, 335
BstMWI	GCNNNNNNNGC	1 cut(s)	92
BstNI	CCWGG	2 cut(s)	17, 109
BstSCI	CCNGG	2 cut(s)	15, 107
BstSFI	CTRYAG	1 cut(s)	492
BstUI	CGCG	2 cut(s)	86, 202
BstV1I	GCAGC	3 cut(s)	169, 478, 544
BstX2I	RGATCY	1 cut(s)	335
BstYI	RGATCY	1 cut(s)	335
BsuRI	GGCC	2 cut(s)	249, 428
BtgZI	GCGATG	1 cut(s)	110
BtsCI	GGATG	6 cut(s)	12, 103, 271, 295, 328, 364
BtsI	GCAGTG	1 cut(s)	552
BtsIMutI	CAGTG	2 cut(s)	234, 552
Cac8I	GCNNGC	2 cut(s)	470, 474
CfoI	GCGC	1 cut(s)	102
Cfr13I	GGNCC	2 cut(s)	210, 255
Csp6I	GTAC	1 cut(s)	549
CviAII	CATG	2 cut(s)	40, 207
CviQI	GTAC	1 cut(s)	549
DdeI	CTNAG	2 cut(s)	588, 597
DpnI	GATC	3 cut(s)	59, 89, 337
DpnII	GATC	3 cut(s)	57, 87, 335
DraI	TTTAAA	2 cut(s)	274, 423
Ecl136II	GAGCTC	1 cut(s)	140
Eco130I	CCWWGG	3 cut(s)	133, 327, 565
Eco147I	AGGCCT	1 cut(s)	428
Eco24I	GRGCYC	1 cut(s)	142
Eco32I	GATATC	1 cut(s)	594
Eco47I	GGWCC	2 cut(s)	210, 255
Eco53kI	GAGCTC	1 cut(s)	140
EcoICRI	GAGCTC	1 cut(s)	140
EcoRI	GAATTC	2 cut(s)	624, 645
EcoRII	CCWGG	2 cut(s)	15, 107
EcoRV	GATATC	1 cut(s)	594
EcoT14I	CCWWGG	3 cut(s)	133, 327, 565
EcoT38I	GRGCYC	1 cut(s)	142
ErhI	CCWWGG	3 cut(s)	133, 327, 565
FaeI	CATG	2 cut(s)	43, 210
FaiI	YATR	6 cut(s)	41, 208, 221, 253, 262, 533
FalI	AAGNNNNNCTT	2 cut(s)	59, 91
FatI	CATG	2 cut(s)	39, 206
Fnu4HI	GCNGC	5 cut(s)	81, 84, 183, 492, 558
FokI	GGATG	5 cut(s)	90, 278, 302, 335, 371
FriOI	GRGCYC	1 cut(s)	142
Fsp4HI	GCNGC	5 cut(s)	81, 84, 183, 492, 558
FspBI	CTAG	2 cut(s)	134, 473
GlaI	GCGC	1 cut(s)	101
GluI	GCNGC	5 cut(s)	81, 84, 183, 492, 558
GsaI	CCCAGC	1 cut(s)	181
HaeIII	GGCC	2 cut(s)	249, 428
HhaI	GCGC	1 cut(s)	102
Hin1II	CATG	2 cut(s)	43, 210
Hin6I	GCGC	1 cut(s)	100
HinP1I	GCGC	1 cut(s)	100
HinfI	GANTC	3 cut(s)	114, 382, 528
HphI	GGTGA	4 cut(s)	16, 402, 461, 470
Hpy166II	GTNNAC	1 cut(s)	549
Hpy188I	TCNGA	4 cut(s)	55, 591, 598, 644
Hpy8I	GTNNAC	1 cut(s)	549
HpyAV	CCTTC	4 cut(s)	82, 275, 439, 664
HpyCH4III	ACNGT	4 cut(s)	10, 46, 229, 667
HpyCH4V	TGCA	4 cut(s)	302, 400, 494, 611
HpyF10VI	GCNNNNNNNGC	1 cut(s)	92
HpyF3I	CTNAG	2 cut(s)	588, 597
Hsp92II	CATG	2 cut(s)	43, 210
HspAI	GCGC	1 cut(s)	100
Kzo9I	GATC	3 cut(s)	57, 87, 335
LmnI	GCTCC	2 cut(s)	137, 190
Lsp1109I	GCAGC	3 cut(s)	169, 478, 544
LweI	GCATC	4 cut(s)	87, 256, 313, 593
MaeI	CTAG	2 cut(s)	134, 473
MaeIII	GTNAC	2 cut(s)	30, 458
MalI	GATC	3 cut(s)	59, 89, 337
MboI	GATC	3 cut(s)	57, 87, 335
MboII	GAAGA	2 cut(s)	67, 397
MflI	RGATCY	1 cut(s)	335
MhlI	GDGCHC	3 cut(s)	8, 51, 142
MluCI	AATT	8 cut(s)	144, 190, 296, 317, 401, 603, 624, 645
MlyI	GAGTC	1 cut(s)	108
MseI	TTAA	2 cut(s)	273, 422
MslI	CAYNNNNRTG	1 cut(s)	44
MspR9I	CCNGG	2 cut(s)	17, 109
MvaI	CCWGG	2 cut(s)	17, 109
MvnI	CGCG	2 cut(s)	86, 202
MwoI	GCNNNNNNNGC	1 cut(s)	92
NdeII	GATC	3 cut(s)	57, 87, 335
NheI	GCTAGC	1 cut(s)	472
NlaIII	CATG	2 cut(s)	43, 210
NlaIV	GGNNCC	2 cut(s)	212, 337
NmuCI	GTSAC	2 cut(s)	30, 458
PceI	AGGCCT	1 cut(s)	428
PfeI	GAWTC	2 cut(s)	382, 528
PkrI	GCNGC	5 cut(s)	82, 85, 184, 493, 559
PleI	GAGTC	1 cut(s)	108
PpsI	GAGTC	1 cut(s)	108
Psp124BI	GAGCTC	1 cut(s)	142
Psp6I	CCWGG	2 cut(s)	15, 107
PspFI	CCCAGC	1 cut(s)	177
PspGI	CCWGG	2 cut(s)	15, 107
PspN4I	GGNNCC	2 cut(s)	212, 337
PspPI	GGNCC	2 cut(s)	210, 255
PstI	CTGCAG	1 cut(s)	496
PsuI	RGATCY	1 cut(s)	335
RsaI	GTAC	1 cut(s)	550
RsaNI	GTAC	1 cut(s)	549
RseI	CAYNNNNRTG	1 cut(s)	44
SacI	GAGCTC	1 cut(s)	142
SaqAI	TTAA	2 cut(s)	273, 422
SatI	GCNGC	5 cut(s)	81, 84, 183, 492, 558
Sau3AI	GATC	3 cut(s)	57, 87, 335
Sau96I	GGNCC	2 cut(s)	210, 255
SchI	GAGTC	1 cut(s)	108
ScrFI	CCNGG	2 cut(s)	17, 109
SduI	GDGCHC	3 cut(s)	8, 51, 142
SetI	ASST	7 cut(s)	74, 142, 474, 478, 514, 581, 622
SfaNI	GCATC	4 cut(s)	87, 256, 313, 593
SfcI	CTRYAG	1 cut(s)	492
SinI	GGWCC	2 cut(s)	210, 255
SmiMI	CAYNNNNRTG	1 cut(s)	44
Sse9I	AATT	8 cut(s)	144, 190, 296, 317, 401, 603, 624, 645
SseBI	AGGCCT	1 cut(s)	428
SsiI	CCGC	4 cut(s)	81, 84, 202, 314
SspMI	CTAG	2 cut(s)	134, 473
SstI	GAGCTC	1 cut(s)	142
StuI	AGGCCT	1 cut(s)	428
StyD4I	CCNGG	2 cut(s)	15, 107
StyI	CCWWGG	3 cut(s)	133, 327, 565
TaaI	ACNGT	4 cut(s)	10, 46, 229, 667
TasI	AATT	8 cut(s)	144, 190, 296, 317, 401, 603, 624, 645
TauI	GCSGC	2 cut(s)	83, 86
TfiI	GAWTC	2 cut(s)	382, 528
Tru1I	TTAA	2 cut(s)	273, 422
Tru9I	TTAA	2 cut(s)	273, 422
TscAI	CASTG	2 cut(s)	234, 559
TseFI	GTSAC	2 cut(s)	30, 458
TseI	GCWGC	3 cut(s)	182, 491, 557
Tsp45I	GTSAC	2 cut(s)	30, 458
TspDTI	ATGAA	4 cut(s)	309, 378, 513, 622
TspRI	CASTG	2 cut(s)	234, 559
VpaK11BI	GGWCC	2 cut(s)	210, 255
XapI	RAATTY	4 cut(s)	190, 296, 624, 645
XmaJI	CCTAGG	1 cut(s)	133
XspI	CTAG	2 cut(s)	134, 473

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.