RLG00000006574

GDT1-like protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr2
OG0009322
Physical Location & Seq
Reverse (-)
8648993 .. 8651623
2631 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000006574

Sequence Viewer

Length: 642 bp
ATGAGCACCGTCGTCCAGGGTTTCACCAAGTCACTTGCGATGACTGTGCTATCGGAGATCGGCGACAAGACCTTCTTCGCCGCCGCGATCCTTGCGATGCGCCATCCTAGGAGACTCGTTTTGTCTGGTTGCCTAGGAGCTCTAATTGTGATGACTATTCTTTCTGTTCTTGTTGGCTGGGCTGCTCCAAATTTGCTCTCGCGGACATGGACCCATCACATAACAACAGTTTTGTTCTTTGGGTTCGGCCTATGGTCCTTATGGGATGCTTTCAAAGGAGACGGGGGTGATGATGAACTTGCAGAAGTTGAAGCGGAATTGGATGCCAAGGCGGGATCCACCAAACAGAGTAGTAAGGATGATGATGAATCGAAAAAGCAGAATCGTTCATTTATCTTGCAATTCTTCTCACCCATTTTTTTAAAGGCCTTTTCTATTACTTTTTTCGGTGAATGGGGTGACAAGAGCCAGCTAGCTACTATTGGTTTGGCTGCAGATGAAAACCCATTAGGTGTGGTTATTGGTGGAATCATAGGACAAGCGTTGTGTACCGCTGCTGCTGTCCTTGGTGGAAAGAGCTTGGCATCTCAGATATCTGAGAAAATTGTTGCATTATCAGATCTGATTAATGATCAGGATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0008150 GO:0009628 GO:0050896 GO:0080167
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
UPF0016

Protein Analysis

214

Amino Acids

22.79

Weight (kDa)

5.05

Isoelectric Point (pI)

36.75

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
GDT1 PF01169 10 - 83 1.5e-19 Divalent cation/proton antiporter GDT1
GDT1 PF01169 142 - 205 4.7e-20 Divalent cation/proton antiporter GDT1
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 2 cut(s) 86, 202
AciI CCGC 6 cut(s) 81, 84, 202, 314, 332, 552
AclWI GGATC 3 cut(s) 82, 330, 343
AcsI RAATTY 1 cut(s) 190
AfaI GTAC 1 cut(s) 550
AgsI TTSAA 2 cut(s) 274, 311
AjnI CCWGG 1 cut(s) 15
AluBI AGCT 4 cut(s) 140, 472, 476, 579
AluI AGCT 4 cut(s) 140, 472, 476, 579
Alw21I GWGCWC 2 cut(s) 8, 142
Alw26I GTCTC 2 cut(s) 106, 273
AlwI GGATC 3 cut(s) 82, 330, 343
AoxI GGCC 2 cut(s) 247, 426
ApeKI GCWGC 4 cut(s) 182, 491, 554, 557
ApoI RAATTY 1 cut(s) 190
AseI ATTAAT 1 cut(s) 627
AspA2I CCTAGG 2 cut(s) 107, 133
AspLEI GCGC 1 cut(s) 102
AspS9I GGNCC 2 cut(s) 210, 255
AsuHPI GGTGA 5 cut(s) 16, 299, 402, 461, 470
AsuNHI GCTAGC 1 cut(s) 472
AvaII GGWCC 2 cut(s) 210, 255
AvrII CCTAGG 2 cut(s) 107, 133
BamHI GGATCC 1 cut(s) 335
BanII GRGCYC 1 cut(s) 142
Bbv12I GWGCWC 2 cut(s) 8, 142
BbvI GCAGC 4 cut(s) 169, 478, 541, 544
BccI CCATC 2 cut(s) 111, 222
BcgI CGANNNNNNTGC 2 cut(s) 28, 62
BciT130I CCWGG 1 cut(s) 17
BclI TGATCA 1 cut(s) 631
BcoDI GTCTC 2 cut(s) 106, 273
BfaI CTAG 3 cut(s) 108, 134, 473
BfmI CTRYAG 1 cut(s) 492
BglII AGATCT 1 cut(s) 619
BisI GCNGC 6 cut(s) 81, 84, 183, 492, 555, 558
BlnI CCTAGG 2 cut(s) 107, 133
BlsI GCNGC 6 cut(s) 82, 85, 184, 493, 556, 559
Bme1390I CCNGG 1 cut(s) 17
Bme18I GGWCC 2 cut(s) 210, 255
BmgT120I GGNCC 2 cut(s) 210, 255
BmiI GGNNCC 2 cut(s) 212, 337
BmrFI CCNGG 1 cut(s) 17
BmsI GCATC 4 cut(s) 87, 256, 313, 593
BmtI GCTAGC 1 cut(s) 476
BsaJI CCNNGG 5 cut(s) 16, 107, 133, 327, 565
BseBI CCWGG 1 cut(s) 17
BseDI CCNNGG 5 cut(s) 16, 107, 133, 327, 565
BseGI GGATG 4 cut(s) 103, 271, 328, 364
BseMII CTCAG 2 cut(s) 588, 602
BseXI GCAGC 4 cut(s) 169, 478, 541, 544
BseYI CCCAGC 1 cut(s) 177
Bsh1236I CGCG 2 cut(s) 86, 202
BshFI GGCC 2 cut(s) 249, 428
BsiHKAI GWGCWC 2 cut(s) 8, 142
BsmAI GTCTC 2 cut(s) 106, 273
BsmBI CGTCTC 1 cut(s) 273
BsnI GGCC 2 cut(s) 249, 428
Bsp1286I GDGCHC 2 cut(s) 8, 142
Bsp143I GATC 5 cut(s) 57, 87, 335, 619, 631
BspACI CCGC 6 cut(s) 81, 84, 202, 314, 332, 552
BspANI GGCC 2 cut(s) 249, 428
BspCNI CTCAG 2 cut(s) 589, 601
BspFNI CGCG 2 cut(s) 86, 202
BspLI GGNNCC 2 cut(s) 212, 337
BspMAI CTGCAG 1 cut(s) 496
BspOI GCTAGC 1 cut(s) 476
BspPI GGATC 3 cut(s) 82, 330, 343
BssECI CCNNGG 5 cut(s) 16, 107, 133, 327, 565
BssMI GATC 5 cut(s) 57, 87, 335, 619, 631
BssT1I CCWWGG 4 cut(s) 107, 133, 327, 565
Bst2UI CCWGG 1 cut(s) 17
Bst4CI ACNGT 3 cut(s) 10, 46, 229
BstC8I GCNNGC 2 cut(s) 470, 474
BstDEI CTNAG 2 cut(s) 588, 597
BstF5I GGATG 4 cut(s) 103, 271, 328, 364
BstFNI CGCG 2 cut(s) 86, 202
BstHHI GCGC 1 cut(s) 102
BstKTI GATC 5 cut(s) 60, 90, 338, 622, 634
BstMAI GTCTC 2 cut(s) 106, 273
BstMBI GATC 5 cut(s) 57, 87, 335, 619, 631
BstMWI GCNNNNNNNGC 1 cut(s) 92
BstNI CCWGG 1 cut(s) 17
BstSCI CCNGG 1 cut(s) 15
BstSFI CTRYAG 1 cut(s) 492
BstUI CGCG 2 cut(s) 86, 202
BstV1I GCAGC 4 cut(s) 169, 478, 541, 544
BstX2I RGATCY 2 cut(s) 335, 619
BstYI RGATCY 2 cut(s) 335, 619
BsuRI GGCC 2 cut(s) 249, 428
BtgZI GCGATG 2 cut(s) 53, 110
BtsCI GGATG 4 cut(s) 103, 271, 328, 364
Cac8I GCNNGC 2 cut(s) 470, 474
CfoI GCGC 1 cut(s) 102
Cfr13I GGNCC 2 cut(s) 210, 255
Csp6I GTAC 1 cut(s) 549
CviAII CATG 1 cut(s) 207
CviQI GTAC 1 cut(s) 549
DdeI CTNAG 2 cut(s) 588, 597
DpnI GATC 5 cut(s) 59, 89, 337, 621, 633
DpnII GATC 5 cut(s) 57, 87, 335, 619, 631
DraI TTTAAA 1 cut(s) 423
Ecl136II GAGCTC 1 cut(s) 140
Eco130I CCWWGG 4 cut(s) 107, 133, 327, 565
Eco147I AGGCCT 1 cut(s) 428
Eco24I GRGCYC 1 cut(s) 142
Eco32I GATATC 1 cut(s) 594
Eco47I GGWCC 2 cut(s) 210, 255
Eco53kI GAGCTC 1 cut(s) 140
EcoICRI GAGCTC 1 cut(s) 140
EcoRII CCWGG 1 cut(s) 15
EcoRV GATATC 1 cut(s) 594
EcoT14I CCWWGG 4 cut(s) 107, 133, 327, 565
EcoT38I GRGCYC 1 cut(s) 142
ErhI CCWWGG 4 cut(s) 107, 133, 327, 565
Esp3I CGTCTC 1 cut(s) 273
FaeI CATG 1 cut(s) 210
FaiI YATR 5 cut(s) 208, 221, 253, 262, 533
FalI AAGNNNNNCTT 2 cut(s) 59, 91
FatI CATG 1 cut(s) 206
FauI CCCGC 1 cut(s) 325
FbaI TGATCA 1 cut(s) 631
Fnu4HI GCNGC 6 cut(s) 81, 84, 183, 492, 555, 558
FokI GGATG 4 cut(s) 90, 278, 335, 371
FriOI GRGCYC 1 cut(s) 142
Fsp4HI GCNGC 6 cut(s) 81, 84, 183, 492, 555, 558
FspBI CTAG 3 cut(s) 108, 134, 473
GlaI GCGC 1 cut(s) 101
GluI GCNGC 6 cut(s) 81, 84, 183, 492, 555, 558
GsaI CCCAGC 1 cut(s) 181
HaeIII GGCC 2 cut(s) 249, 428
HhaI GCGC 1 cut(s) 102
Hin1II CATG 1 cut(s) 210
Hin6I GCGC 1 cut(s) 100
HinP1I GCGC 1 cut(s) 100
HinfI GANTC 4 cut(s) 114, 368, 382, 528
HphI GGTGA 5 cut(s) 16, 299, 402, 461, 470
Hpy166II GTNNAC 1 cut(s) 549
Hpy188I TCNGA 5 cut(s) 55, 591, 598, 619, 624
Hpy188III TCNNGA 1 cut(s) 635
Hpy8I GTNNAC 1 cut(s) 549
Hpy99I CGWCG 1 cut(s) 14
HpyAV CCTTC 1 cut(s) 82
HpyCH4III ACNGT 3 cut(s) 10, 46, 229
HpyCH4V TGCA 4 cut(s) 302, 400, 494, 611
HpyF10VI GCNNNNNNNGC 1 cut(s) 92
HpyF3I CTNAG 2 cut(s) 588, 597
Hsp92II CATG 1 cut(s) 210
HspAI GCGC 1 cut(s) 100
Ksp22I TGATCA 1 cut(s) 631
Kzo9I GATC 5 cut(s) 57, 87, 335, 619, 631
LmnI GCTCC 2 cut(s) 137, 190
LpnPI CCDG 6 cut(s) 2, 29, 111, 163, 482, 620
Lsp1109I GCAGC 4 cut(s) 169, 478, 541, 544
LweI GCATC 4 cut(s) 87, 256, 313, 593
MaeI CTAG 3 cut(s) 108, 134, 473
MaeIII GTNAC 2 cut(s) 30, 458
MalI GATC 5 cut(s) 59, 89, 337, 621, 633
MboI GATC 5 cut(s) 57, 87, 335, 619, 631
MboII GAAGA 2 cut(s) 67, 397
MflI RGATCY 2 cut(s) 335, 619
MhlI GDGCHC 2 cut(s) 8, 142
MluCI AATT 5 cut(s) 144, 190, 317, 401, 603
MlyI GAGTC 1 cut(s) 108
MseI TTAA 2 cut(s) 422, 627
MspA1I CMGCKG 1 cut(s) 554
MspR9I CCNGG 1 cut(s) 17
MvaI CCWGG 1 cut(s) 17
MvnI CGCG 2 cut(s) 86, 202
MwoI GCNNNNNNNGC 1 cut(s) 92
NdeII GATC 5 cut(s) 57, 87, 335, 619, 631
NheI GCTAGC 1 cut(s) 472
NlaIII CATG 1 cut(s) 210
NlaIV GGNNCC 2 cut(s) 212, 337
NmuCI GTSAC 2 cut(s) 30, 458
PceI AGGCCT 1 cut(s) 428
PfeI GAWTC 3 cut(s) 368, 382, 528
PkrI GCNGC 6 cut(s) 82, 85, 184, 493, 556, 559
PleI GAGTC 1 cut(s) 108
PpsI GAGTC 1 cut(s) 108
PshBI ATTAAT 1 cut(s) 627
Psp124BI GAGCTC 1 cut(s) 142
Psp6I CCWGG 1 cut(s) 15
PspFI CCCAGC 1 cut(s) 177
PspGI CCWGG 1 cut(s) 15
PspN4I GGNNCC 2 cut(s) 212, 337
PspPI GGNCC 2 cut(s) 210, 255
PstI CTGCAG 1 cut(s) 496
PsuI RGATCY 2 cut(s) 335, 619
RsaI GTAC 1 cut(s) 550
RsaNI GTAC 1 cut(s) 549
SacI GAGCTC 1 cut(s) 142
SaqAI TTAA 2 cut(s) 422, 627
SatI GCNGC 6 cut(s) 81, 84, 183, 492, 555, 558
Sau3AI GATC 5 cut(s) 57, 87, 335, 619, 631
Sau96I GGNCC 2 cut(s) 210, 255
SchI GAGTC 1 cut(s) 108
ScrFI CCNGG 1 cut(s) 17
SduI GDGCHC 2 cut(s) 8, 142
SetI ASST 6 cut(s) 74, 142, 474, 478, 514, 581
SfaNI GCATC 4 cut(s) 87, 256, 313, 593
SfcI CTRYAG 1 cut(s) 492
SinI GGWCC 2 cut(s) 210, 255
Sse9I AATT 5 cut(s) 144, 190, 317, 401, 603
SseBI AGGCCT 1 cut(s) 428
SsiI CCGC 6 cut(s) 81, 84, 202, 314, 332, 552
SspMI CTAG 3 cut(s) 108, 134, 473
SstI GAGCTC 1 cut(s) 142
StuI AGGCCT 1 cut(s) 428
StyD4I CCNGG 1 cut(s) 15
StyI CCWWGG 4 cut(s) 107, 133, 327, 565
TaaI ACNGT 3 cut(s) 10, 46, 229
TaqI TCGA 1 cut(s) 371
TasI AATT 5 cut(s) 144, 190, 317, 401, 603
TauI GCSGC 2 cut(s) 83, 86
TfiI GAWTC 3 cut(s) 368, 382, 528
Tru1I TTAA 2 cut(s) 422, 627
Tru9I TTAA 2 cut(s) 422, 627
TseFI GTSAC 2 cut(s) 30, 458
TseI GCWGC 4 cut(s) 182, 491, 554, 557
Tsp45I GTSAC 2 cut(s) 30, 458
TspDTI ATGAA 4 cut(s) 309, 378, 381, 513
VpaK11BI GGWCC 2 cut(s) 210, 255
VspI ATTAAT 1 cut(s) 627
XapI RAATTY 1 cut(s) 190
XmaJI CCTAGG 2 cut(s) 107, 133
XspI CTAG 3 cut(s) 108, 134, 473
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.