Prupe.1G306900_v2.0.a1

GDT1-like protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp01
OG0009322
Physical Location & Seq
Reverse (-)
29986288 .. 29989899
3612 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.1G306900.1

Sequence Viewer

Length: 690 bp
ATGAGTACAGTCGTGCAGGGTTTCACCAAGTCACTTGCCATGACTGTGCTCTCTGAGATCGGCGACAAGACCTTCTTCGCAGCTGCGATCCTTGCAATGCGCCATCCTAGGAGACTTGTTTTGTCTGGTTGCCTAGGAGCTCTGATTGTGATGACTATTCTTTCTGTTCTTGTCGGTTTGGCTGCTCCAAATCTGCTCTCACGGAAATGGTCCCATCACATAACAACATTGTTGTTCTTTGGGTTCGGGCTATGGTCCTTATGGGATGCTTTTAAAGAAGATGGGGATGATGATGAGTTTGCAGAAGTTGAAGCAAAATTGGATGCTGATCTTAAGGCTAATGCAGGAGCCACCAAAAAGAGTAGTAAGGACGATGATGACTTGAAAAAGCAGAAACGTTCGTTTCTCTTGCAGTTCTTCTCACCAATTTTTTTAAAGGCCTTTTCCATTACTTTTTTTGGTGAATGGGGTGACAAGAGCCAGCTAGCTACCATCGGTCTGGCTGCAGATGAGAATCCATTAGGTGTGGTTCTTGGTGGAATCTTAGGACAAGCATTGTGTACCACTGCTGCTGTCCTTGGTGGAAAGAGTTTGGCATCTCAGATCTCTGAGAAAATAGTTGCTTTATCAGGCGGAGTTCTTTTCATTGTTTTTGGAATCCAATCCTTCCTTTCAACAGTTGAGGCATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0008150 GO:0009628 GO:0050896 GO:0080167
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
UPF0016

Protein Analysis

230

Amino Acids

24.51

Weight (kDa)

5.92

Isoelectric Point (pI)

33.63

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 633
AclI AACGTT 1 cut(s) 397
AclWI GGATC 1 cut(s) 82
AfaI GTAC 2 cut(s) 7, 562
AflII CTTAAG 1 cut(s) 332
AgsI TTSAA 3 cut(s) 311, 385, 675
AluBI AGCT 4 cut(s) 83, 140, 484, 488
AluI AGCT 4 cut(s) 83, 140, 484, 488
Alw21I GWGCWC 2 cut(s) 51, 142
Alw26I GTCTC 1 cut(s) 106
AlwI GGATC 1 cut(s) 82
AoxI GGCC 1 cut(s) 438
ApeKI GCWGC 5 cut(s) 80, 83, 182, 503, 569
AspA2I CCTAGG 2 cut(s) 107, 133
AspLEI GCGC 1 cut(s) 102
AspS9I GGNCC 2 cut(s) 210, 255
AsuHPI GGTGA 4 cut(s) 16, 414, 473, 482
AsuNHI GCTAGC 1 cut(s) 484
AvaII GGWCC 2 cut(s) 210, 255
AvrII CCTAGG 2 cut(s) 107, 133
BanII GRGCYC 1 cut(s) 142
Bbv12I GWGCWC 2 cut(s) 51, 142
BbvI GCAGC 5 cut(s) 70, 92, 169, 490, 556
BccI CCATC 4 cut(s) 111, 222, 275, 500
BcoDI GTCTC 1 cut(s) 106
BfaI CTAG 3 cut(s) 108, 134, 485
BfmI CTRYAG 1 cut(s) 504
BfrI CTTAAG 1 cut(s) 332
BglII AGATCT 1 cut(s) 603
BisI GCNGC 5 cut(s) 81, 84, 183, 504, 570
BlnI CCTAGG 2 cut(s) 107, 133
BlsI GCNGC 5 cut(s) 82, 85, 184, 505, 571
Bme18I GGWCC 2 cut(s) 210, 255
BmgT120I GGNCC 2 cut(s) 210, 255
BmiI GGNNCC 2 cut(s) 212, 349
BmsI GCATC 3 cut(s) 256, 313, 605
BmtI GCTAGC 1 cut(s) 488
BsaBI GATNNNNATC 2 cut(s) 327, 513
BsaJI CCNNGG 3 cut(s) 107, 133, 577
Bse3DI GCAATG 1 cut(s) 102
Bse8I GATNNNNATC 2 cut(s) 327, 513
BseDI CCNNGG 3 cut(s) 107, 133, 577
BseGI GGATG 4 cut(s) 103, 271, 292, 328
BseJI GATNNNNATC 2 cut(s) 327, 513
BseMI GCAATG 1 cut(s) 102
BseMII CTCAG 3 cut(s) 45, 600, 614
BseXI GCAGC 5 cut(s) 70, 92, 169, 490, 556
BsgI GTGCAG 1 cut(s) 35
BshFI GGCC 1 cut(s) 440
BsiHKAI GWGCWC 2 cut(s) 51, 142
BslFI GGGAC 1 cut(s) 196
BsmAI GTCTC 1 cut(s) 106
BsmFI GGGAC 1 cut(s) 196
BsnI GGCC 1 cut(s) 440
Bsp1286I GDGCHC 2 cut(s) 51, 142
Bsp143I GATC 4 cut(s) 57, 87, 328, 603
BspACI CCGC 1 cut(s) 633
BspANI GGCC 1 cut(s) 440
BspCNI CTCAG 3 cut(s) 46, 601, 613
BspLI GGNNCC 2 cut(s) 212, 349
BspMAI CTGCAG 1 cut(s) 508
BspOI GCTAGC 1 cut(s) 488
BspPI GGATC 1 cut(s) 82
BspTI CTTAAG 1 cut(s) 332
BsrDI GCAATG 1 cut(s) 102
BssECI CCNNGG 3 cut(s) 107, 133, 577
BssMI GATC 4 cut(s) 57, 87, 328, 603
BssT1I CCWWGG 3 cut(s) 107, 133, 577
Bst4CI ACNGT 3 cut(s) 10, 46, 679
BstAFI CTTAAG 1 cut(s) 332
BstC8I GCNNGC 2 cut(s) 482, 486
BstDEI CTNAG 4 cut(s) 54, 544, 600, 609
BstF5I GGATG 4 cut(s) 103, 271, 292, 328
BstHHI GCGC 1 cut(s) 102
BstKTI GATC 4 cut(s) 60, 90, 331, 606
BstMAI GTCTC 1 cut(s) 106
BstMBI GATC 4 cut(s) 57, 87, 328, 603
BstMWI GCNNNNNNNGC 1 cut(s) 92
BstSFI CTRYAG 1 cut(s) 504
BstV1I GCAGC 5 cut(s) 70, 92, 169, 490, 556
BstX2I RGATCY 1 cut(s) 603
BstXI CCANNNNNNTGG 1 cut(s) 499
BstYI RGATCY 1 cut(s) 603
BsuRI GGCC 1 cut(s) 440
BtsCI GGATG 4 cut(s) 103, 271, 292, 328
BtsI GCAGTG 1 cut(s) 564
BtsIMutI CAGTG 1 cut(s) 564
Cac8I GCNNGC 2 cut(s) 482, 486
CfoI GCGC 1 cut(s) 102
Cfr13I GGNCC 2 cut(s) 210, 255
Csp6I GTAC 2 cut(s) 6, 561
CviAII CATG 2 cut(s) 40, 687
CviQI GTAC 2 cut(s) 6, 561
DdeI CTNAG 4 cut(s) 54, 544, 600, 609
DpnI GATC 4 cut(s) 59, 89, 330, 605
DpnII GATC 4 cut(s) 57, 87, 328, 603
DraI TTTAAA 2 cut(s) 274, 435
EciI GGCGGA 1 cut(s) 648
Ecl136II GAGCTC 1 cut(s) 140
Eco130I CCWWGG 3 cut(s) 107, 133, 577
Eco147I AGGCCT 1 cut(s) 440
Eco24I GRGCYC 1 cut(s) 142
Eco47I GGWCC 2 cut(s) 210, 255
Eco53kI GAGCTC 1 cut(s) 140
EcoICRI GAGCTC 1 cut(s) 140
EcoT14I CCWWGG 3 cut(s) 107, 133, 577
EcoT38I GRGCYC 1 cut(s) 142
ErhI CCWWGG 3 cut(s) 107, 133, 577
FaeI CATG 2 cut(s) 43, 690
FaiI YATR 5 cut(s) 41, 221, 253, 262, 688
FalI AAGNNNNNCTT 2 cut(s) 59, 91
FaqI GGGAC 1 cut(s) 196
FatI CATG 2 cut(s) 39, 686
Fnu4HI GCNGC 5 cut(s) 81, 84, 183, 504, 570
FokI GGATG 4 cut(s) 90, 278, 299, 335
FriOI GRGCYC 1 cut(s) 142
Fsp4HI GCNGC 5 cut(s) 81, 84, 183, 504, 570
FspBI CTAG 3 cut(s) 108, 134, 485
GlaI GCGC 1 cut(s) 101
GluI GCNGC 5 cut(s) 81, 84, 183, 504, 570
HaeIII GGCC 1 cut(s) 440
HhaI GCGC 1 cut(s) 102
Hin1II CATG 2 cut(s) 43, 690
Hin6I GCGC 1 cut(s) 100
HinP1I GCGC 1 cut(s) 100
HinfI GANTC 3 cut(s) 514, 540, 657
HphI GGTGA 4 cut(s) 16, 414, 473, 482
Hpy166II GTNNAC 1 cut(s) 561
Hpy188I TCNGA 4 cut(s) 55, 144, 603, 610
Hpy8I GTNNAC 1 cut(s) 561
HpyAV CCTTC 2 cut(s) 82, 676
HpyCH4III ACNGT 3 cut(s) 10, 46, 679
HpyCH4IV ACGT 1 cut(s) 397
HpyCH4V TGCA 6 cut(s) 16, 95, 302, 344, 412, 506
HpyF10VI GCNNNNNNNGC 1 cut(s) 92
HpyF3I CTNAG 4 cut(s) 54, 544, 600, 609
HpySE526I ACGT 1 cut(s) 397
Hsp92II CATG 2 cut(s) 43, 690
HspAI GCGC 1 cut(s) 100
Kzo9I GATC 4 cut(s) 57, 87, 328, 603
LmnI GCTCC 3 cut(s) 137, 190, 347
LpnPI CCDG 6 cut(s) 2, 111, 330, 485, 494, 615
Lsp1109I GCAGC 5 cut(s) 70, 92, 169, 490, 556
LweI GCATC 3 cut(s) 256, 313, 605
MaeI CTAG 3 cut(s) 108, 134, 485
MaeII ACGT 1 cut(s) 397
MaeIII GTNAC 2 cut(s) 30, 470
MalI GATC 4 cut(s) 59, 89, 330, 605
MboI GATC 4 cut(s) 57, 87, 328, 603
MboII GAAGA 3 cut(s) 67, 290, 409
MflI RGATCY 1 cut(s) 603
MhlI GDGCHC 2 cut(s) 51, 142
MluCI AATT 2 cut(s) 317, 426
MnlI CCTC 1 cut(s) 676
MseI TTAA 3 cut(s) 273, 333, 434
MslI CAYNNNNRTG 2 cut(s) 44, 205
MspA1I CMGCKG 1 cut(s) 83
MspCI CTTAAG 1 cut(s) 332
MwoI GCNNNNNNNGC 1 cut(s) 92
NdeII GATC 4 cut(s) 57, 87, 328, 603
NheI GCTAGC 1 cut(s) 484
NlaIII CATG 2 cut(s) 43, 690
NlaIV GGNNCC 2 cut(s) 212, 349
NmuCI GTSAC 2 cut(s) 30, 470
PceI AGGCCT 1 cut(s) 440
PfeI GAWTC 3 cut(s) 514, 540, 657
PkrI GCNGC 5 cut(s) 82, 85, 184, 505, 571
Psp124BI GAGCTC 1 cut(s) 142
Psp1406I AACGTT 1 cut(s) 397
PspN4I GGNNCC 2 cut(s) 212, 349
PspPI GGNCC 2 cut(s) 210, 255
PstI CTGCAG 1 cut(s) 508
PsuI RGATCY 1 cut(s) 603
PvuII CAGCTG 1 cut(s) 83
RsaI GTAC 2 cut(s) 7, 562
RsaNI GTAC 2 cut(s) 6, 561
RseI CAYNNNNRTG 2 cut(s) 44, 205
SacI GAGCTC 1 cut(s) 142
SaqAI TTAA 3 cut(s) 273, 333, 434
SatI GCNGC 5 cut(s) 81, 84, 183, 504, 570
Sau3AI GATC 4 cut(s) 57, 87, 328, 603
Sau96I GGNCC 2 cut(s) 210, 255
SduI GDGCHC 2 cut(s) 51, 142
SetI ASST 7 cut(s) 74, 85, 142, 400, 486, 490, 526
SfaNI GCATC 3 cut(s) 256, 313, 605
SfcI CTRYAG 1 cut(s) 504
SinI GGWCC 2 cut(s) 210, 255
SmiMI CAYNNNNRTG 2 cut(s) 44, 205
SmlI CTYRAG 1 cut(s) 332
SmoI CTYRAG 1 cut(s) 332
Sse9I AATT 2 cut(s) 317, 426
SseBI AGGCCT 1 cut(s) 440
SsiI CCGC 1 cut(s) 633
SspMI CTAG 3 cut(s) 108, 134, 485
SstI GAGCTC 1 cut(s) 142
StuI AGGCCT 1 cut(s) 440
StyI CCWWGG 3 cut(s) 107, 133, 577
TaaI ACNGT 3 cut(s) 10, 46, 679
TaiI ACGT 1 cut(s) 400
TaqII GACCGA 1 cut(s) 485
TasI AATT 2 cut(s) 317, 426
TatI WGTACW 1 cut(s) 5
TfiI GAWTC 3 cut(s) 514, 540, 657
Tru1I TTAA 3 cut(s) 273, 333, 434
Tru9I TTAA 3 cut(s) 273, 333, 434
TscAI CASTG 1 cut(s) 571
TseFI GTSAC 2 cut(s) 30, 470
TseI GCWGC 5 cut(s) 80, 83, 182, 503, 569
Tsp45I GTSAC 2 cut(s) 30, 470
TspDTI ATGAA 1 cut(s) 634
TspGWI ACGGA 1 cut(s) 217
TspRI CASTG 1 cut(s) 571
Vha464I CTTAAG 1 cut(s) 332
VpaK11BI GGWCC 2 cut(s) 210, 255
XmaJI CCTAGG 2 cut(s) 107, 133
XspI CTAG 3 cut(s) 108, 134, 485
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.