FvH4_4g28930

AhpC/TSA antioxidant enzyme

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb4
OG0014726
Physical Location & Seq
Reverse (-)
29338548 .. 29340760
2213 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_4g28930.t2

Sequence Viewer

Length: 1056 bp
ATGCAATATGGAGATGCTCTCGAGTCCAGCGGGAAAGGTTTGCCTGAGATCCTTACCATAGGTGCTGGAGATCTTACTTCCCAGTTTGGTATGAAGCGAGGCCATATTGCTCGTTTCATGAACAGAACCGGTCCATCCAGTGCATGTGTAGATGATCCAAAAGCTGATCCTTCCCCTGCAACAAAAAGAATTAGCACACTTTCAAAGAATAATAGCATTTACAAGAGTTTTCAATCTGTAACCTCTCAAAAATTCCCATCAAGAACTACTTCAATCACTGAGAAAACTCTTGAACAATCTCTGGCGAGTTTTAAGATTAAGGATGGATACGTGTTCAAAGGAATAGTTGCCATGGAGCCCGCTGAGCCTAGAGCATGTGGCTGCGTACAACCTCCTGCTGTAACTGACAAAATTGCTCCATACTCTGCTCTCGAAAGCATCTCAGTGCAGAAGCTGACTCCCGAGTATAAAATTGGAATGGAGCATCTGGTGAAAACCAAAACTCCTCCAATGAAGGCTGCAGAACTATGGCGAAATAAACCAGCTGTGCTACTCTGCATCCGACGTCCAGGGTGCATCATGTGTCGAGCTGAAGCTCACCAGTTATATGCCAAAAAACCACTATTTGATGCACTAGGAATTCAGCTATTTGCAGTTCTTCACGAATATAAGGAATCAGAGGTAAGAGAATTCTGGCCTAGATATTGGGGTGGTGCTGTTGTATATGATCGTGGAATGGAATTCTTCAAAGCACTTGGTGGGGGCAAACTGCTGAAGGAAAAATTTCTATCTGGTTTTGTGTTCAACCCCCGAGCTATAGCAAATTACAAGCGGGCAAAAGCAATGGGAATACAGCAAAACTTCAAAGGAGAAGGTGAAATAAAGGGAGGACTCTTTATAGTTGGCAGTGGAAAAACTGGCATTGCGTACCAGTTTATTGAGAGAAATTTCGGTGATTGGGCGCCAATAGCTGAAGTCCTTGACATCTGTACTCAGTTGCAGAACCAAACGGAAAGTCAAGAGGAGTCCAGTAAATCATCATCTCAGTTTAAATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
AhpC-TSA_2

Protein Analysis

352

Amino Acids

38.82

Weight (kDa)

9.31

Isoelectric Point (pI)

37.0

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0014726)

Species Orthologous Gene IDs
fragaria_vesca FvH4_4g28930 FvH4_4g28930 FvH4_4g28930 FvH4_4g28930 FvH4_4g28930
malus_domestica MD13G1054900.v1.1 MD16G1053800.v1.1
rosa_chinensis RchiOBHm_Chr4g0437071
rosa_laevigata RLG00000006471
rosa_multiflora Rmu_ssc0000006.1_g000012
rosa_roxburghii Rroxscaffold_5G00378150
rosa_rugosa Rorug04G0298000
rosa_samantha Rh4AG352600 Rh4BG361900 Rh4CG376200 Rh4DG356100
rosa_wichuraiana Rw4G030870

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 568
AccB1I GGYRCC 1 cut(s) 961
AciI CCGC 3 cut(s) 30, 360, 832
AclWI GGATC 3 cut(s) 43, 149, 161
AcsI RAATTY 6 cut(s) 251, 639, 689, 740, 782, 946
AcuI CTGAAG 3 cut(s) 612, 794, 993
AcyI GRCGYC 2 cut(s) 565, 962
AdeI CACNNNGTG 1 cut(s) 758
AfaI GTAC 3 cut(s) 387, 929, 991
AflIII ACRYGT 1 cut(s) 330
AgeI ACCGGT 1 cut(s) 128
AgsI TTSAA 8 cut(s) 204, 233, 273, 293, 337, 748, 805, 865
AjnI CCWGG 1 cut(s) 568
AluBI AGCT 8 cut(s) 164, 454, 545, 590, 596, 646, 815, 971
AluI AGCT 8 cut(s) 164, 454, 545, 590, 596, 646, 815, 971
AlwI GGATC 3 cut(s) 43, 149, 161
AlwNI CAGNNNCTG 1 cut(s) 454
Ama87I CYCGRG 3 cut(s) 20, 461, 810
AoxI GGCC 2 cut(s) 100, 695
ApeKI GCWGC 2 cut(s) 381, 518
ApoI RAATTY 6 cut(s) 251, 639, 689, 740, 782, 946
ArsI GACNNNNNNTTYG 2 cut(s) 1000, 1032
AsiGI ACCGGT 1 cut(s) 128
Asp700I GAANNNNTTC 2 cut(s) 268, 783
AspLEI GCGC 1 cut(s) 964
AspS9I GGNCC 1 cut(s) 131
AsuHPI GGTGA 4 cut(s) 502, 590, 887, 965
AvaI CYCGRG 3 cut(s) 20, 461, 810
AvaII GGWCC 1 cut(s) 131
BanI GGYRCC 1 cut(s) 961
BanII GRGCYC 1 cut(s) 360
BbvI GCAGC 2 cut(s) 368, 505
BccI CCATC 3 cut(s) 142, 265, 317
BciT130I CCWGG 1 cut(s) 570
BciVI GTATCC 1 cut(s) 320
BfaI CTAG 3 cut(s) 369, 635, 699
BfmI CTRYAG 2 cut(s) 519, 816
BfoI RGCGCY 1 cut(s) 965
BfuI GTATCC 1 cut(s) 320
BglII AGATCT 1 cut(s) 70
BisI GCNGC 2 cut(s) 382, 519
BlpI GCTNAGC 1 cut(s) 363
BlsI GCNGC 2 cut(s) 383, 520
Bme1390I CCNGG 1 cut(s) 570
Bme18I GGWCC 1 cut(s) 131
BmeT110I CYCGRG 3 cut(s) 20, 461, 810
BmgT120I GGNCC 1 cut(s) 131
BmiI GGNNCC 2 cut(s) 357, 963
BmrFI CCNGG 1 cut(s) 570
BmrI ACTGGG 1 cut(s) 76
BmsI GCATC 6 cut(s) 4, 447, 493, 567, 585, 619
BmuI ACTGGG 1 cut(s) 76
BplI GAGNNNNNCTC 1 cut(s) 35
BpmI CTGGAG 1 cut(s) 87
Bpu1102I GCTNAGC 1 cut(s) 363
BsaAI YACGTR 1 cut(s) 331
BsaHI GRCGYC 2 cut(s) 565, 962
BsaJI CCNNGG 2 cut(s) 351, 569
BsaWI WCCGGW 1 cut(s) 128
BsaXI ACNNNNNCTCC 2 cut(s) 487, 517
Bse118I RCCGGY 1 cut(s) 128
Bse1I ACTGG 6 cut(s) 82, 138, 601, 922, 931, 1029
Bse3DI GCAATG 2 cut(s) 849, 921
BseBI CCWGG 1 cut(s) 570
BseDI CCNNGG 2 cut(s) 351, 569
BseGI GGATG 3 cut(s) 134, 328, 558
BseMI GCAATG 2 cut(s) 849, 921
BseMII CTCAG 5 cut(s) 36, 270, 354, 456, 1007
BseNI ACTGG 6 cut(s) 82, 138, 601, 922, 931, 1029
BseRI GAGGAG 2 cut(s) 495, 1037
BseXI GCAGC 2 cut(s) 368, 505
BsgI GTGCAG 1 cut(s) 467
BshFI GGCC 2 cut(s) 102, 697
BshNI GGYRCC 1 cut(s) 961
BshTI ACCGGT 1 cut(s) 128
BsiHKCI CYCGRG 3 cut(s) 20, 461, 810
BsiSI CCGG 1 cut(s) 129
BsnI GGCC 2 cut(s) 102, 697
BsoBI CYCGRG 3 cut(s) 20, 461, 810
Bsp1286I GDGCHC 1 cut(s) 360
Bsp143I GATC 5 cut(s) 48, 70, 154, 166, 727
Bsp1720I GCTNAGC 1 cut(s) 363
Bsp19I CCATGG 1 cut(s) 351
BspACI CCGC 3 cut(s) 30, 360, 832
BspANI GGCC 2 cut(s) 102, 697
BspCNI CTCAG 5 cut(s) 37, 271, 355, 455, 1006
BspHI TCATGA 1 cut(s) 117
BspLI GGNNCC 2 cut(s) 357, 963
BspMAI CTGCAG 1 cut(s) 523
BspPI GGATC 3 cut(s) 43, 149, 161
BspT107I GGYRCC 1 cut(s) 961
BsrDI GCAATG 2 cut(s) 849, 921
BsrFI RCCGGY 1 cut(s) 128
BsrI ACTGG 6 cut(s) 82, 138, 601, 922, 931, 1029
BssAI RCCGGY 1 cut(s) 128
BssECI CCNNGG 2 cut(s) 351, 569
BssMI GATC 5 cut(s) 48, 70, 154, 166, 727
BssNI GRCGYC 2 cut(s) 565, 962
BssT1I CCWWGG 1 cut(s) 351
Bst2UI CCWGG 1 cut(s) 570
BstACI GRCGYC 2 cut(s) 565, 962
BstBAI YACGTR 1 cut(s) 331
BstC8I GCNNGC 2 cut(s) 360, 834
BstDEI CTNAG 6 cut(s) 45, 279, 363, 442, 993, 1044
BstDSI CCRYGG 1 cut(s) 351
BstF5I GGATG 3 cut(s) 134, 328, 558
BstH2I RGCGCY 1 cut(s) 965
BstHHI GCGC 1 cut(s) 964
BstKTI GATC 5 cut(s) 51, 73, 157, 169, 730
BstMBI GATC 5 cut(s) 48, 70, 154, 166, 727
BstMWI GCNNNNNNNGC 2 cut(s) 364, 968
BstNI CCWGG 1 cut(s) 570
BstNSI RCATGY 2 cut(s) 147, 378
BstSCI CCNGG 1 cut(s) 568
BstSFI CTRYAG 2 cut(s) 519, 816
BstV1I GCAGC 2 cut(s) 368, 505
BstX2I RGATCY 2 cut(s) 48, 70
BstYI RGATCY 2 cut(s) 48, 70
BsuI GTATCC 1 cut(s) 320
BsuRI GGCC 2 cut(s) 102, 697
BtgI CCRYGG 1 cut(s) 351
BtsCI GGATG 3 cut(s) 134, 328, 558
BtsI GCAGTG 1 cut(s) 913
BtsIMutI CAGTG 4 cut(s) 145, 276, 450, 913
Cac8I GCNNGC 2 cut(s) 360, 834
CaiI CAGNNNCTG 1 cut(s) 454
CciI TCATGA 1 cut(s) 117
CfoI GCGC 1 cut(s) 964
Cfr10I RCCGGY 1 cut(s) 128
Cfr13I GGNCC 1 cut(s) 131
Csp6I GTAC 3 cut(s) 386, 928, 990
CspAI ACCGGT 1 cut(s) 128
CviAII CATG 5 cut(s) 118, 144, 352, 375, 580
CviQI GTAC 3 cut(s) 386, 928, 990
DdeI CTNAG 6 cut(s) 45, 279, 363, 442, 993, 1044
DinI GGCGCC 1 cut(s) 963
DpnI GATC 5 cut(s) 50, 72, 156, 168, 729
DpnII GATC 5 cut(s) 48, 70, 154, 166, 727
DraI TTTAAA 1 cut(s) 1051
DraIII CACNNNGTG 1 cut(s) 758
Eco130I CCWWGG 1 cut(s) 351
Eco24I GRGCYC 1 cut(s) 360
Eco47I GGWCC 1 cut(s) 131
Eco57I CTGAAG 3 cut(s) 612, 794, 993
Eco88I CYCGRG 3 cut(s) 20, 461, 810
EcoRI GAATTC 3 cut(s) 639, 689, 740
EcoRII CCWGG 1 cut(s) 568
EcoT14I CCWWGG 1 cut(s) 351
EcoT38I GRGCYC 1 cut(s) 360
EgeI GGCGCC 1 cut(s) 963
EheI GGCGCC 1 cut(s) 963
ErhI CCWWGG 1 cut(s) 351
FaeI CATG 5 cut(s) 121, 147, 355, 378, 583
FalI AAGNNNNNCTT 2 cut(s) 253, 285
FatI CATG 5 cut(s) 117, 143, 351, 374, 579
FauI CCCGC 3 cut(s) 23, 367, 825
Fnu4HI GCNGC 2 cut(s) 382, 519
FokI GGATG 3 cut(s) 121, 335, 545
FriOI GRGCYC 1 cut(s) 360
Fsp4HI GCNGC 2 cut(s) 382, 519
FspBI CTAG 3 cut(s) 369, 635, 699
GlaI GCGC 1 cut(s) 963
GluI GCNGC 2 cut(s) 382, 519
GsuI CTGGAG 1 cut(s) 87
HaeII RGCGCY 1 cut(s) 965
HaeIII GGCC 2 cut(s) 102, 697
HapII CCGG 1 cut(s) 129
HhaI GCGC 1 cut(s) 964
Hin1I GRCGYC 2 cut(s) 565, 962
Hin1II CATG 5 cut(s) 121, 147, 355, 378, 583
Hin6I GCGC 1 cut(s) 962
HinP1I GCGC 1 cut(s) 962
HinfI GANTC 5 cut(s) 23, 457, 674, 891, 1025
HpaII CCGG 1 cut(s) 129
HphI GGTGA 4 cut(s) 502, 590, 887, 965
Hpy188I TCNGA 2 cut(s) 563, 679
Hpy188III TCNNGA 8 cut(s) 20, 118, 261, 290, 431, 461, 662, 1019
Hpy99I CGWCG 1 cut(s) 567
HpyAV CCTTC 4 cut(s) 180, 508, 769, 866
HpyCH4IV ACGT 2 cut(s) 330, 565
HpyF10VI GCNNNNNNNGC 2 cut(s) 364, 968
HpyF3I CTNAG 6 cut(s) 45, 279, 363, 442, 993, 1044
HpySE526I ACGT 2 cut(s) 330, 565
Hsp92I GRCGYC 2 cut(s) 565, 962
Hsp92II CATG 5 cut(s) 121, 147, 355, 378, 583
HspAI GCGC 1 cut(s) 962
KasI GGCGCC 1 cut(s) 961
Kzo9I GATC 5 cut(s) 48, 70, 154, 166, 727
LmnI GCTCC 3 cut(s) 355, 421, 481
Lsp1109I GCAGC 2 cut(s) 368, 505
LweI GCATC 6 cut(s) 4, 447, 493, 567, 585, 619
MaeI CTAG 3 cut(s) 369, 635, 699
MaeII ACGT 2 cut(s) 330, 565
MaeIII GTNAC 2 cut(s) 238, 400
MalI GATC 5 cut(s) 50, 72, 156, 168, 729
MboI GATC 5 cut(s) 48, 70, 154, 166, 727
MboII GAAGA 2 cut(s) 650, 736
MflI RGATCY 2 cut(s) 48, 70
MhlI GDGCHC 1 cut(s) 360
Mly113I GGCGCC 1 cut(s) 962
MlyI GAGTC 4 cut(s) 32, 451, 885, 1034
MmeI TCCRAC 1 cut(s) 586
MnlI CCTC 7 cut(s) 92, 253, 402, 516, 673, 881, 1015
MroXI GAANNNNTTC 2 cut(s) 268, 783
MseI TTAA 3 cut(s) 312, 318, 1050
MslI CAYNNNNRTG 1 cut(s) 443
MspA1I CMGCKG 3 cut(s) 30, 362, 545
MspI CCGG 1 cut(s) 129
MspR9I CCNGG 1 cut(s) 570
MvaI CCWGG 1 cut(s) 570
MwoI GCNNNNNNNGC 2 cut(s) 364, 968
NarI GGCGCC 1 cut(s) 962
NcoI CCATGG 1 cut(s) 351
NdeII GATC 5 cut(s) 48, 70, 154, 166, 727
NlaIII CATG 5 cut(s) 121, 147, 355, 378, 583
NlaIV GGNNCC 2 cut(s) 357, 963
NspI RCATGY 2 cut(s) 147, 378
PaeR7I CTCGAG 1 cut(s) 20
PagI TCATGA 1 cut(s) 117
PdmI GAANNNNTTC 2 cut(s) 268, 783
PfeI GAWTC 1 cut(s) 674
PinAI ACCGGT 1 cut(s) 128
PkrI GCNGC 2 cut(s) 383, 520
PleI GAGTC 4 cut(s) 31, 451, 885, 1033
PluTI GGCGCC 1 cut(s) 965
PpsI GAGTC 4 cut(s) 31, 451, 885, 1033
Ppu21I YACGTR 1 cut(s) 331
Psp6I CCWGG 1 cut(s) 568
PspGI CCWGG 1 cut(s) 568
PspN4I GGNNCC 2 cut(s) 357, 963
PspPI GGNCC 1 cut(s) 131
PstI CTGCAG 1 cut(s) 523
PstNI CAGNNNCTG 1 cut(s) 454
PsuI RGATCY 2 cut(s) 48, 70
PvuII CAGCTG 1 cut(s) 545
RsaI GTAC 3 cut(s) 387, 929, 991
RsaNI GTAC 3 cut(s) 386, 928, 990
RseI CAYNNNNRTG 1 cut(s) 443
SaqAI TTAA 3 cut(s) 312, 318, 1050
SatI GCNGC 2 cut(s) 382, 519
Sau3AI GATC 5 cut(s) 48, 70, 154, 166, 727
Sau96I GGNCC 1 cut(s) 131
SchI GAGTC 4 cut(s) 32, 451, 885, 1034
ScrFI CCNGG 1 cut(s) 570
SduI GDGCHC 1 cut(s) 360
SfaNI GCATC 6 cut(s) 4, 447, 493, 567, 585, 619
SfcI CTRYAG 2 cut(s) 519, 816
SfoI GGCGCC 1 cut(s) 963
Sfr274I CTCGAG 1 cut(s) 20
SinI GGWCC 1 cut(s) 131
SlaI CTCGAG 1 cut(s) 20
SmiMI CAYNNNNRTG 1 cut(s) 443
SmlI CTYRAG 1 cut(s) 20
SmoI CTYRAG 1 cut(s) 20
SsiI CCGC 3 cut(s) 30, 360, 832
SspDI GGCGCC 1 cut(s) 961
SspMI CTAG 3 cut(s) 369, 635, 699
StyD4I CCNGG 1 cut(s) 568
StyI CCWWGG 1 cut(s) 351
TaiI ACGT 2 cut(s) 333, 568
TaqI TCGA 3 cut(s) 21, 432, 586
TatI WGTACW 1 cut(s) 989
TfiI GAWTC 1 cut(s) 674
Tru1I TTAA 3 cut(s) 312, 318, 1050
Tru9I TTAA 3 cut(s) 312, 318, 1050
TscAI CASTG 4 cut(s) 145, 283, 450, 913
TseI GCWGC 2 cut(s) 381, 518
TspDTI ATGAA 4 cut(s) 106, 107, 134, 527
TspGWI ACGGA 1 cut(s) 1025
TspRI CASTG 4 cut(s) 145, 283, 450, 913
VpaK11BI GGWCC 1 cut(s) 131
XapI RAATTY 6 cut(s) 251, 639, 689, 740, 782, 946
XceI RCATGY 2 cut(s) 147, 378
XhoI CTCGAG 1 cut(s) 20
XmnI GAANNNNTTC 2 cut(s) 268, 783
XspI CTAG 3 cut(s) 369, 635, 699
ZraI GACGTC 1 cut(s) 566
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.