Rh4CG376200

AhpC/TSA antioxidant enzyme

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr4C
OG0014726
Physical Location & Seq
Reverse (-)
62982881 .. 62988052
5172 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh4CG376200.1

Sequence Viewer

Length: 1032 bp
ATGCAATATGGAGATGCTCTTGAGTCCAGTGGGAAAGGTATGGCTGAGATCCTTACCATAGGCGCTGTAGATCTTTCTTCCCAGTTTGGTATGAAGCGAGGCCATATTGCTCGTTTCATGGACAGAACGGGTCCATCCAGTGCATGTGTAGATGAACCAAAAGCTGATCCTTCCCCTGCAACAAAAAGAATTAGCACACTTTCGAAGAATAATAGCATTTACAAGAGTTTCCAATCTGTAAACTCTCAAAAGGTCCCATCAAGAACTACTTCAATCACTGAGAAAACTCTTGAACAATCGCTGGCGAGTTTTAAGATTAAGGATGGATACGTCTTCAAAGGGATAGTTTCCATGGAGCCAGCTGAGCCTAGAGCATGTGGCTGCGTACAACCTCCTGCTGTAACTGACAAAATTGCTCCATACTCTGCTATTGAAAGCATCTCAGTTCAGAAGCTAACTCCGGAGTATAAAATTGGAATGGAGCATTTGGTGAAAACCAAAACTCCTCCAATGAAGGCTGCAGAACTATGGCGAAACAAACCAGCTGTGCTACTCTGCATCCGGCGTCCAGGGTGCATCATGTGTCGAGCTGAAGCTCACCAGCTATATGCCAAAAAACCACTATTTGATGCACTAGGAGTTCAGCTATTTGCAGTTCTTCATGAGTATAAGGAATCAGAGGTAAGAGAATTCTGGCCTAGATATTGGGGCGGTGCTGTAATATATGATCGCGGAATGGAATTCTTCAAAGCACTTGGTGGGGGGAAACTGCTGAAGGAAAAATTTCTCTCAGGTTTTTTGTTCAACCCCCGAGCTATAGCAAATTACAAGCGGGCAAAAGCAATGGGAATACAGCAAAACTTCAAAGGAGAAGGTGAAATAAAGGGAGGGCTCTTTATAGTTGGCAGTGGAAAAAGCGGCATTGCATACCAGTTTATTGAGAGGAATTTTGGTGATTGGGCACCAGTAGCTGAAGTCCTTGACATCTGTACTCAGTTGCAGGAAAGTCAAGCGGAGTCCATTAAAAGATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
AhpC-TSA_2

Protein Analysis

343

Amino Acids

37.94

Weight (kDa)

9.32

Isoelectric Point (pI)

37.77

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
AhpC-TSA_2 PF13911 201 - 316 2e-22 AhpC/TSA antioxidant enzyme
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0014726)

Species Orthologous Gene IDs
fragaria_vesca FvH4_4g28930 FvH4_4g28930 FvH4_4g28930 FvH4_4g28930 FvH4_4g28930
malus_domestica MD13G1054900.v1.1 MD16G1053800.v1.1
rosa_chinensis RchiOBHm_Chr4g0437071
rosa_laevigata RLG00000006471
rosa_multiflora Rmu_ssc0000006.1_g000012
rosa_roxburghii Rroxscaffold_5G00378150
rosa_rugosa Rorug04G0298000
rosa_samantha Rh4AG352600 Rh4BG361900 Rh4CG376200 Rh4DG356100
rosa_wichuraiana Rw4G030870

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 961
AccII CGCG 1 cut(s) 732
AccIII TCCGGA 1 cut(s) 460
AciI CCGC 5 cut(s) 711, 732, 832, 918, 1013
AclWI GGATC 2 cut(s) 43, 161
AcsI RAATTY 4 cut(s) 689, 740, 782, 946
AcuI CTGAAG 3 cut(s) 612, 794, 993
AcyI GRCGYC 1 cut(s) 565
AdeI CACNNNGTG 1 cut(s) 758
AfaI GTAC 2 cut(s) 387, 991
AgsI TTSAA 7 cut(s) 273, 293, 337, 434, 748, 805, 865
AjnI CCWGG 1 cut(s) 568
AlwI GGATC 2 cut(s) 43, 161
AlwNI CAGNNNCTG 1 cut(s) 971
Ama87I CYCGRG 1 cut(s) 810
Aor13HI TCCGGA 1 cut(s) 460
AoxI GGCC 2 cut(s) 100, 695
ApeKI GCWGC 2 cut(s) 381, 518
ApoI RAATTY 4 cut(s) 689, 740, 782, 946
Asp700I GAANNNNTTC 2 cut(s) 268, 783
AspLEI GCGC 1 cut(s) 65
AspS9I GGNCC 2 cut(s) 131, 253
AsuHPI GGTGA 4 cut(s) 502, 590, 887, 965
AsuII TTCGAA 1 cut(s) 203
AvaI CYCGRG 1 cut(s) 810
AvaII GGWCC 2 cut(s) 131, 253
BaeGI GKGCMC 1 cut(s) 964
BanI GGYRCC 1 cut(s) 961
BanII GRGCYC 1 cut(s) 894
BbsI GAAGAC 1 cut(s) 325
BbvI GCAGC 2 cut(s) 368, 505
BccI CCATC 3 cut(s) 142, 265, 317
BciT130I CCWGG 1 cut(s) 570
BciVI GTATCC 1 cut(s) 320
BfaI CTAG 3 cut(s) 369, 635, 699
BfmI CTRYAG 3 cut(s) 66, 519, 816
BfoI RGCGCY 1 cut(s) 66
BfuI GTATCC 1 cut(s) 320
BglII AGATCT 1 cut(s) 70
BisI GCNGC 3 cut(s) 382, 519, 919
BlpI GCTNAGC 1 cut(s) 363
BlsI GCNGC 3 cut(s) 383, 520, 920
Bme1390I CCNGG 1 cut(s) 570
Bme18I GGWCC 2 cut(s) 131, 253
BmeT110I CYCGRG 1 cut(s) 810
BmgT120I GGNCC 2 cut(s) 131, 253
BmiI GGNNCC 4 cut(s) 132, 255, 357, 963
BmrFI CCNGG 1 cut(s) 570
BmrI ACTGGG 1 cut(s) 76
BmsI GCATC 5 cut(s) 4, 447, 567, 585, 619
BmuI ACTGGG 1 cut(s) 76
BpiI GAAGAC 1 cut(s) 325
Bpu1102I GCTNAGC 1 cut(s) 363
Bpu14I TTCGAA 1 cut(s) 203
BpuEI CTTGAG 1 cut(s) 41
BsaHI GRCGYC 1 cut(s) 565
BsaJI CCNNGG 2 cut(s) 351, 569
BsaWI WCCGGW 1 cut(s) 460
BsaXI ACNNNNNCTCC 2 cut(s) 487, 517
Bse1I ACTGG 5 cut(s) 27, 82, 138, 931, 965
Bse3DI GCAATG 2 cut(s) 849, 921
BseAI TCCGGA 1 cut(s) 460
BseBI CCWGG 1 cut(s) 570
BseDI CCNNGG 2 cut(s) 351, 569
BseGI GGATG 3 cut(s) 134, 328, 558
BseMI GCAATG 2 cut(s) 849, 921
BseMII CTCAG 6 cut(s) 36, 270, 354, 456, 804, 1007
BseNI ACTGG 5 cut(s) 27, 82, 138, 931, 965
BseRI GAGGAG 1 cut(s) 495
BseSI GKGCMC 1 cut(s) 964
BseXI GCAGC 2 cut(s) 368, 505
Bsh1236I CGCG 1 cut(s) 732
BshFI GGCC 2 cut(s) 102, 697
BshNI GGYRCC 1 cut(s) 961
BsiHKCI CYCGRG 1 cut(s) 810
BsiSI CCGG 2 cut(s) 461, 562
BslFI GGGAC 1 cut(s) 239
BsmFI GGGAC 1 cut(s) 239
BsnI GGCC 2 cut(s) 102, 697
BsoBI CYCGRG 1 cut(s) 810
Bsp119I TTCGAA 1 cut(s) 203
Bsp1286I GDGCHC 2 cut(s) 894, 964
Bsp13I TCCGGA 1 cut(s) 460
Bsp143I GATC 4 cut(s) 48, 70, 166, 727
Bsp1720I GCTNAGC 1 cut(s) 363
Bsp19I CCATGG 1 cut(s) 351
BspACI CCGC 5 cut(s) 711, 732, 832, 918, 1013
BspANI GGCC 2 cut(s) 102, 697
BspCNI CTCAG 6 cut(s) 37, 271, 355, 455, 803, 1006
BspEI TCCGGA 1 cut(s) 460
BspFNI CGCG 1 cut(s) 732
BspHI TCATGA 1 cut(s) 661
BspLI GGNNCC 4 cut(s) 132, 255, 357, 963
BspMAI CTGCAG 1 cut(s) 523
BspPI GGATC 2 cut(s) 43, 161
BspT104I TTCGAA 1 cut(s) 203
BspT107I GGYRCC 1 cut(s) 961
BsrDI GCAATG 2 cut(s) 849, 921
BsrI ACTGG 5 cut(s) 27, 82, 138, 931, 965
BssECI CCNNGG 2 cut(s) 351, 569
BssMI GATC 4 cut(s) 48, 70, 166, 727
BssNI GRCGYC 1 cut(s) 565
BssT1I CCWWGG 1 cut(s) 351
Bst2UI CCWGG 1 cut(s) 570
BstACI GRCGYC 1 cut(s) 565
BstBI TTCGAA 1 cut(s) 203
BstC8I GCNNGC 3 cut(s) 303, 360, 834
BstDEI CTNAG 6 cut(s) 45, 279, 363, 442, 790, 993
BstDSI CCRYGG 1 cut(s) 351
BstF5I GGATG 3 cut(s) 134, 328, 558
BstFNI CGCG 1 cut(s) 732
BstH2I RGCGCY 1 cut(s) 66
BstHHI GCGC 1 cut(s) 65
BstKTI GATC 4 cut(s) 51, 73, 169, 730
BstMBI GATC 4 cut(s) 48, 70, 166, 727
BstMWI GCNNNNNNNGC 2 cut(s) 364, 968
BstNI CCWGG 1 cut(s) 570
BstNSI RCATGY 2 cut(s) 147, 378
BstSCI CCNGG 1 cut(s) 568
BstSFI CTRYAG 3 cut(s) 66, 519, 816
BstSLI GKGCMC 1 cut(s) 964
BstUI CGCG 1 cut(s) 732
BstV1I GCAGC 2 cut(s) 368, 505
BstV2I GAAGAC 1 cut(s) 325
BstX2I RGATCY 2 cut(s) 48, 70
BstYI RGATCY 2 cut(s) 48, 70
BsuI GTATCC 1 cut(s) 320
BsuRI GGCC 2 cut(s) 102, 697
BtgI CCRYGG 1 cut(s) 351
BtsCI GGATG 3 cut(s) 134, 328, 558
BtsI GCAGTG 1 cut(s) 913
BtsIMutI CAGTG 4 cut(s) 34, 145, 276, 913
Cac8I GCNNGC 3 cut(s) 303, 360, 834
CaiI CAGNNNCTG 1 cut(s) 971
CciI TCATGA 1 cut(s) 661
CfoI GCGC 1 cut(s) 65
Cfr13I GGNCC 2 cut(s) 131, 253
CseI GACGC 1 cut(s) 554
Csp6I GTAC 2 cut(s) 386, 990
CviAII CATG 6 cut(s) 118, 144, 352, 375, 580, 662
CviQI GTAC 2 cut(s) 386, 990
DdeI CTNAG 6 cut(s) 45, 279, 363, 442, 790, 993
DpnI GATC 4 cut(s) 50, 72, 168, 729
DpnII GATC 4 cut(s) 48, 70, 166, 727
DraIII CACNNNGTG 1 cut(s) 758
Eco130I CCWWGG 1 cut(s) 351
Eco24I GRGCYC 1 cut(s) 894
Eco47I GGWCC 2 cut(s) 131, 253
Eco57I CTGAAG 3 cut(s) 612, 794, 993
Eco88I CYCGRG 1 cut(s) 810
EcoO109I RGGNCCY 1 cut(s) 253
EcoRI GAATTC 2 cut(s) 689, 740
EcoRII CCWGG 1 cut(s) 568
EcoT14I CCWWGG 1 cut(s) 351
EcoT38I GRGCYC 1 cut(s) 894
ErhI CCWWGG 1 cut(s) 351
FaeI CATG 6 cut(s) 121, 147, 355, 378, 583, 665
FalI AAGNNNNNCTT 2 cut(s) 253, 285
FaqI GGGAC 1 cut(s) 239
FatI CATG 6 cut(s) 117, 143, 351, 374, 579, 661
FauI CCCGC 1 cut(s) 825
Fnu4HI GCNGC 3 cut(s) 382, 519, 919
FokI GGATG 3 cut(s) 121, 335, 545
FriOI GRGCYC 1 cut(s) 894
Fsp4HI GCNGC 3 cut(s) 382, 519, 919
FspBI CTAG 3 cut(s) 369, 635, 699
GlaI GCGC 1 cut(s) 64
GluI GCNGC 3 cut(s) 382, 519, 919
HaeII RGCGCY 1 cut(s) 66
HaeIII GGCC 2 cut(s) 102, 697
HapII CCGG 2 cut(s) 461, 562
HgaI GACGC 1 cut(s) 554
HhaI GCGC 1 cut(s) 65
Hin1I GRCGYC 1 cut(s) 565
Hin1II CATG 6 cut(s) 121, 147, 355, 378, 583, 665
Hin6I GCGC 1 cut(s) 63
HinP1I GCGC 1 cut(s) 63
HinfI GANTC 3 cut(s) 23, 674, 1016
HpaII CCGG 2 cut(s) 461, 562
HphI GGTGA 4 cut(s) 502, 590, 887, 965
Hpy166II GTNNAC 1 cut(s) 241
Hpy188I TCNGA 2 cut(s) 450, 679
Hpy188III TCNNGA 5 cut(s) 20, 261, 290, 461, 662
Hpy8I GTNNAC 1 cut(s) 241
HpyAV CCTTC 4 cut(s) 180, 508, 769, 866
HpyCH4IV ACGT 1 cut(s) 330
HpyF10VI GCNNNNNNNGC 2 cut(s) 364, 968
HpyF3I CTNAG 6 cut(s) 45, 279, 363, 442, 790, 993
HpySE526I ACGT 1 cut(s) 330
Hsp92I GRCGYC 1 cut(s) 565
Hsp92II CATG 6 cut(s) 121, 147, 355, 378, 583, 665
HspAI GCGC 1 cut(s) 63
Kpn2I TCCGGA 1 cut(s) 460
Kzo9I GATC 4 cut(s) 48, 70, 166, 727
LmnI GCTCC 3 cut(s) 355, 421, 481
Lsp1109I GCAGC 2 cut(s) 368, 505
LweI GCATC 5 cut(s) 4, 447, 567, 585, 619
MaeI CTAG 3 cut(s) 369, 635, 699
MaeII ACGT 1 cut(s) 330
MaeIII GTNAC 1 cut(s) 400
MalI GATC 4 cut(s) 50, 72, 168, 729
MboI GATC 4 cut(s) 48, 70, 166, 727
MboII GAAGA 5 cut(s) 69, 217, 325, 650, 736
MflI RGATCY 2 cut(s) 48, 70
MhlI GDGCHC 2 cut(s) 894, 964
MluCI AATT 8 cut(s) 189, 411, 471, 689, 740, 782, 823, 946
MlyI GAGTC 2 cut(s) 32, 1025
MnlI CCTC 6 cut(s) 92, 402, 516, 673, 881, 936
MroI TCCGGA 1 cut(s) 460
MroXI GAANNNNTTC 2 cut(s) 268, 783
MseI TTAA 3 cut(s) 312, 318, 1023
MspA1I CMGCKG 2 cut(s) 362, 545
MspI CCGG 2 cut(s) 461, 562
MspR9I CCNGG 1 cut(s) 570
MvaI CCWGG 1 cut(s) 570
MvnI CGCG 1 cut(s) 732
MwoI GCNNNNNNNGC 2 cut(s) 364, 968
NcoI CCATGG 1 cut(s) 351
NdeII GATC 4 cut(s) 48, 70, 166, 727
NlaIII CATG 6 cut(s) 121, 147, 355, 378, 583, 665
NlaIV GGNNCC 4 cut(s) 132, 255, 357, 963
NspI RCATGY 2 cut(s) 147, 378
NspV TTCGAA 1 cut(s) 203
PagI TCATGA 1 cut(s) 661
PdmI GAANNNNTTC 2 cut(s) 268, 783
PfeI GAWTC 1 cut(s) 674
PkrI GCNGC 3 cut(s) 383, 520, 920
PleI GAGTC 2 cut(s) 31, 1024
PpsI GAGTC 2 cut(s) 31, 1024
PpuMI RGGWCCY 1 cut(s) 253
Psp5II RGGWCCY 1 cut(s) 253
Psp6I CCWGG 1 cut(s) 568
PspGI CCWGG 1 cut(s) 568
PspN4I GGNNCC 4 cut(s) 132, 255, 357, 963
PspPI GGNCC 2 cut(s) 131, 253
PspPPI RGGWCCY 1 cut(s) 253
PstI CTGCAG 1 cut(s) 523
PstNI CAGNNNCTG 1 cut(s) 971
PsuI RGATCY 2 cut(s) 48, 70
PvuII CAGCTG 2 cut(s) 362, 545
RsaI GTAC 2 cut(s) 387, 991
RsaNI GTAC 2 cut(s) 386, 990
SaqAI TTAA 3 cut(s) 312, 318, 1023
SatI GCNGC 3 cut(s) 382, 519, 919
Sau3AI GATC 4 cut(s) 48, 70, 166, 727
Sau96I GGNCC 2 cut(s) 131, 253
SchI GAGTC 2 cut(s) 32, 1025
ScrFI CCNGG 1 cut(s) 570
SduI GDGCHC 2 cut(s) 894, 964
SfaNI GCATC 5 cut(s) 4, 447, 567, 585, 619
SfcI CTRYAG 3 cut(s) 66, 519, 816
SfuI TTCGAA 1 cut(s) 203
SinI GGWCC 2 cut(s) 131, 253
SmlI CTYRAG 1 cut(s) 20
SmoI CTYRAG 1 cut(s) 20
Sse9I AATT 8 cut(s) 189, 411, 471, 689, 740, 782, 823, 946
SsiI CCGC 5 cut(s) 711, 732, 832, 918, 1013
SspMI CTAG 3 cut(s) 369, 635, 699
StyD4I CCNGG 1 cut(s) 568
StyI CCWWGG 1 cut(s) 351
TaiI ACGT 1 cut(s) 333
TaqI TCGA 2 cut(s) 203, 586
TasI AATT 8 cut(s) 189, 411, 471, 689, 740, 782, 823, 946
TatI WGTACW 1 cut(s) 989
TauI GCSGC 1 cut(s) 921
TfiI GAWTC 1 cut(s) 674
Tru1I TTAA 3 cut(s) 312, 318, 1023
Tru9I TTAA 3 cut(s) 312, 318, 1023
TscAI CASTG 4 cut(s) 34, 145, 283, 913
TseI GCWGC 2 cut(s) 381, 518
TspDTI ATGAA 5 cut(s) 106, 107, 168, 527, 650
TspRI CASTG 4 cut(s) 34, 145, 283, 913
VpaK11BI GGWCC 2 cut(s) 131, 253
XapI RAATTY 4 cut(s) 689, 740, 782, 946
XceI RCATGY 2 cut(s) 147, 378
XmnI GAANNNNTTC 2 cut(s) 268, 783
XspI CTAG 3 cut(s) 369, 635, 699
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.