RchiOBHm_Chr4g0437071

AhpC/TSA antioxidant enzyme

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
4
OG0014726
Physical Location & Seq
Reverse (-)
60273776 .. 60275836
2061 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ40534

Sequence Viewer

Length: 1002 bp
ATGGCTTCTTTTTCGATAGAGGAATTTGTTGGGAATGGAGTTCTGAAAGGACTAATTCCAAAGCTGTTAGAAGAAGGTTGGGATGATGTGCCAACCTTGAAGATCATGAATTTGGAGGATATGGATGCAATAAACATGACACAACAACAGAAGGATGCACTGGAAATCAGGTCATACCTGCACGAGCGTGCTTTGATGCAATATGGAGATGCTCTTGAGTCCAGTGGGAAAGGTATGGCTGAGATCCTTACCATAGGCGCTGTAGATCTTTCTTCCCAGTTTGGTATGAAGCGAGGCCATATTGCTCGTTTCATGGACAGAACCGGTCCATCCAGTGCATGTGTAGATGAACCAAAAGCTGATCCTTCCCCTGCAACAAAAAGAATTAGTACAATTCCGAAGAATAATAGCATCTACAAGAGTTTTCAATCTGTAAACTCTCAAAAGGTCCCATCAAGAACTACTTCAATCACTGAGAAAACTCTTGAACAATCGCTGGCGAGTTTTAAAATTAAGGATGGATACATCTTCAAAGGGATAGTTGCCATGGAGCCAGCTGAGCCTAGAGCATGTGGCTGCGTACAACCTCCTGCTGTAACTGACAAAATTGCTCCATACTCTGCTATCGAAAGCATCTCAGTTCAGAAGCTAACTCCGGAGTATAAAATTGGAATGGAGCATTTGGTGAAAACCAAAACTCCTCCAATGAAGGCTGCAGAACTATGGCGAAACAAACCAGCTGTGCTACTCTGCATCCGGCGTCCAGGGTGCATCATGTGTCGAGCTGAAGCTCACCAGCTATATGCCAAAAAACCACTATTTGATGCACTAGGAGTTCAGCTATTTGCAGTTCTTCATGAGTATAAGGAATCAGAGGTAAGAGAATTCTGGCCTAGATATTGGGGCGGTGCTGTAATATATGATCGCGGAATGGAATTCTTCAAAGCACTTGGTGGGGGGAAACTTTTATTGAGAGGAATTTTGGTGATTGGGCACCAGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
AhpC-TSA_2

Protein Analysis

333

Amino Acids

37.0

Weight (kDa)

8.74

Isoelectric Point (pI)

39.73

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
AhpC-TSA_2 PF13911 266 - 326 1.3e-07 AhpC/TSA antioxidant enzyme
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0014726)

Species Orthologous Gene IDs
fragaria_vesca FvH4_4g28930 FvH4_4g28930 FvH4_4g28930 FvH4_4g28930 FvH4_4g28930
malus_domestica MD13G1054900.v1.1 MD16G1053800.v1.1
rosa_chinensis RchiOBHm_Chr4g0437071
rosa_laevigata RLG00000006471
rosa_multiflora Rmu_ssc0000006.1_g000012
rosa_roxburghii Rroxscaffold_5G00378150
rosa_rugosa Rorug04G0298000
rosa_samantha Rh4AG352600 Rh4BG361900 Rh4CG376200 Rh4DG356100
rosa_wichuraiana Rw4G030870

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 186
AccB1I GGYRCC 1 cut(s) 993
AccII CGCG 1 cut(s) 927
AccIII TCCGGA 1 cut(s) 655
AciI CCGC 2 cut(s) 906, 927
AclWI GGATC 2 cut(s) 238, 356
AcsI RAATTY 5 cut(s) 23, 109, 884, 935, 978
AcuI CTGAAG 1 cut(s) 807
AcyI GRCGYC 1 cut(s) 760
AdeI CACNNNGTG 1 cut(s) 953
AfaI GTAC 2 cut(s) 391, 582
AgeI ACCGGT 1 cut(s) 323
AgsI TTSAA 6 cut(s) 100, 428, 468, 488, 532, 943
AjnI CCWGG 1 cut(s) 763
AleI CACNNNNGTG 1 cut(s) 186
AluBI AGCT 9 cut(s) 64, 359, 557, 649, 740, 785, 791, 799, 841
AluI AGCT 9 cut(s) 64, 359, 557, 649, 740, 785, 791, 799, 841
AlwI GGATC 2 cut(s) 238, 356
Aor13HI TCCGGA 1 cut(s) 655
AoxI GGCC 2 cut(s) 295, 890
ApeKI GCWGC 2 cut(s) 576, 713
ApoI RAATTY 5 cut(s) 23, 109, 884, 935, 978
AsiGI ACCGGT 1 cut(s) 323
Asp700I GAANNNNTTC 1 cut(s) 463
AspLEI GCGC 1 cut(s) 260
AspS9I GGNCC 2 cut(s) 326, 448
AsuHPI GGTGA 3 cut(s) 697, 785, 997
AvaII GGWCC 2 cut(s) 326, 448
BaeGI GKGCMC 1 cut(s) 996
BanI GGYRCC 1 cut(s) 993
BauI CACGAG 1 cut(s) 182
BbvI GCAGC 2 cut(s) 563, 700
BccI CCATC 3 cut(s) 337, 460, 512
BciT130I CCWGG 1 cut(s) 765
BciVI GTATCC 1 cut(s) 515
BfaI CTAG 3 cut(s) 564, 830, 894
BfmI CTRYAG 2 cut(s) 261, 714
BfoI RGCGCY 1 cut(s) 261
BfuAI ACCTGC 1 cut(s) 186
BfuI GTATCC 1 cut(s) 515
BglII AGATCT 1 cut(s) 265
BisI GCNGC 2 cut(s) 577, 714
BlpI GCTNAGC 1 cut(s) 558
BlsI GCNGC 2 cut(s) 578, 715
Bme1390I CCNGG 1 cut(s) 765
Bme18I GGWCC 2 cut(s) 326, 448
BmgT120I GGNCC 2 cut(s) 326, 448
BmiI GGNNCC 3 cut(s) 450, 552, 995
BmrFI CCNGG 1 cut(s) 765
BmrI ACTGGG 1 cut(s) 271
BmsI GCATC 9 cut(s) 115, 145, 186, 199, 420, 642, 762, 780, 814
BmuI ACTGGG 1 cut(s) 271
Bpu1102I GCTNAGC 1 cut(s) 558
BpuEI CTTGAG 1 cut(s) 236
BsaHI GRCGYC 1 cut(s) 760
BsaJI CCNNGG 2 cut(s) 546, 764
BsaWI WCCGGW 2 cut(s) 323, 655
BsaXI ACNNNNNCTCC 2 cut(s) 682, 712
Bse118I RCCGGY 1 cut(s) 323
Bse1I ACTGG 5 cut(s) 165, 222, 277, 333, 997
BseAI TCCGGA 1 cut(s) 655
BseBI CCWGG 1 cut(s) 765
BseDI CCNNGG 2 cut(s) 546, 764
BseGI GGATG 6 cut(s) 88, 130, 160, 329, 523, 753
BseMII CTCAG 4 cut(s) 231, 465, 549, 651
BseNI ACTGG 5 cut(s) 165, 222, 277, 333, 997
BseRI GAGGAG 1 cut(s) 690
BseSI GKGCMC 1 cut(s) 996
BseXI GCAGC 2 cut(s) 563, 700
BsgI GTGCAG 1 cut(s) 164
Bsh1236I CGCG 1 cut(s) 927
BshFI GGCC 2 cut(s) 297, 892
BshNI GGYRCC 1 cut(s) 993
BshTI ACCGGT 1 cut(s) 323
BsiSI CCGG 3 cut(s) 324, 656, 757
BslFI GGGAC 1 cut(s) 434
BsmFI GGGAC 1 cut(s) 434
BsnI GGCC 2 cut(s) 297, 892
Bsp1286I GDGCHC 1 cut(s) 996
Bsp13I TCCGGA 1 cut(s) 655
Bsp143I GATC 5 cut(s) 102, 243, 265, 361, 922
Bsp1720I GCTNAGC 1 cut(s) 558
Bsp19I CCATGG 1 cut(s) 546
BspACI CCGC 2 cut(s) 906, 927
BspANI GGCC 2 cut(s) 297, 892
BspCNI CTCAG 4 cut(s) 232, 466, 550, 650
BspEI TCCGGA 1 cut(s) 655
BspFNI CGCG 1 cut(s) 927
BspHI TCATGA 2 cut(s) 105, 856
BspLI GGNNCC 3 cut(s) 450, 552, 995
BspMAI CTGCAG 1 cut(s) 718
BspMI ACCTGC 1 cut(s) 186
BspPI GGATC 2 cut(s) 238, 356
BspT107I GGYRCC 1 cut(s) 993
BsrFI RCCGGY 1 cut(s) 323
BsrI ACTGG 5 cut(s) 165, 222, 277, 333, 997
BssAI RCCGGY 1 cut(s) 323
BssECI CCNNGG 2 cut(s) 546, 764
BssMI GATC 5 cut(s) 102, 243, 265, 361, 922
BssNI GRCGYC 1 cut(s) 760
BssSI CACGAG 1 cut(s) 182
BssT1I CCWWGG 1 cut(s) 546
Bst2BI CACGAG 1 cut(s) 182
Bst2UI CCWGG 1 cut(s) 765
BstACI GRCGYC 1 cut(s) 760
BstC8I GCNNGC 3 cut(s) 189, 498, 555
BstDEI CTNAG 4 cut(s) 240, 474, 558, 637
BstDSI CCRYGG 1 cut(s) 546
BstF5I GGATG 6 cut(s) 88, 130, 160, 329, 523, 753
BstFNI CGCG 1 cut(s) 927
BstH2I RGCGCY 1 cut(s) 261
BstHHI GCGC 1 cut(s) 260
BstKTI GATC 5 cut(s) 105, 246, 268, 364, 925
BstMBI GATC 5 cut(s) 102, 243, 265, 361, 922
BstMWI GCNNNNNNNGC 1 cut(s) 559
BstNI CCWGG 1 cut(s) 765
BstNSI RCATGY 2 cut(s) 342, 573
BstSCI CCNGG 1 cut(s) 763
BstSFI CTRYAG 2 cut(s) 261, 714
BstSLI GKGCMC 1 cut(s) 996
BstUI CGCG 1 cut(s) 927
BstV1I GCAGC 2 cut(s) 563, 700
BstX2I RGATCY 2 cut(s) 243, 265
BstYI RGATCY 2 cut(s) 243, 265
BsuI GTATCC 1 cut(s) 515
BsuRI GGCC 2 cut(s) 297, 892
BtgI CCRYGG 1 cut(s) 546
BtsCI GGATG 6 cut(s) 88, 130, 160, 329, 523, 753
BtsIMutI CAGTG 4 cut(s) 158, 229, 340, 471
BveI ACCTGC 1 cut(s) 186
Cac8I GCNNGC 3 cut(s) 189, 498, 555
CciI TCATGA 2 cut(s) 105, 856
CfoI GCGC 1 cut(s) 260
Cfr10I RCCGGY 1 cut(s) 323
Cfr13I GGNCC 2 cut(s) 326, 448
CseI GACGC 1 cut(s) 749
Csp6I GTAC 2 cut(s) 390, 581
CspAI ACCGGT 1 cut(s) 323
CviAII CATG 8 cut(s) 106, 136, 313, 339, 547, 570, 775, 857
CviQI GTAC 2 cut(s) 390, 581
DdeI CTNAG 4 cut(s) 240, 474, 558, 637
DpnI GATC 5 cut(s) 104, 245, 267, 363, 924
DpnII GATC 5 cut(s) 102, 243, 265, 361, 922
DraI TTTAAA 1 cut(s) 508
DraIII CACNNNGTG 1 cut(s) 953
Eco130I CCWWGG 1 cut(s) 546
Eco47I GGWCC 2 cut(s) 326, 448
Eco57I CTGAAG 1 cut(s) 807
EcoO109I RGGNCCY 1 cut(s) 448
EcoRI GAATTC 2 cut(s) 884, 935
EcoRII CCWGG 1 cut(s) 763
EcoT14I CCWWGG 1 cut(s) 546
ErhI CCWWGG 1 cut(s) 546
FaeI CATG 8 cut(s) 109, 139, 316, 342, 550, 573, 778, 860
FalI AAGNNNNNCTT 2 cut(s) 448, 480
FaqI GGGAC 1 cut(s) 434
FatI CATG 8 cut(s) 105, 135, 312, 338, 546, 569, 774, 856
Fnu4HI GCNGC 2 cut(s) 577, 714
FokI GGATG 6 cut(s) 95, 137, 167, 316, 530, 740
Fsp4HI GCNGC 2 cut(s) 577, 714
FspBI CTAG 3 cut(s) 564, 830, 894
GlaI GCGC 1 cut(s) 259
GluI GCNGC 2 cut(s) 577, 714
HaeII RGCGCY 1 cut(s) 261
HaeIII GGCC 2 cut(s) 297, 892
HapII CCGG 3 cut(s) 324, 656, 757
HgaI GACGC 1 cut(s) 749
HhaI GCGC 1 cut(s) 260
Hin1I GRCGYC 1 cut(s) 760
Hin1II CATG 8 cut(s) 109, 139, 316, 342, 550, 573, 778, 860
Hin6I GCGC 1 cut(s) 258
HinP1I GCGC 1 cut(s) 258
HinfI GANTC 2 cut(s) 218, 869
HpaII CCGG 3 cut(s) 324, 656, 757
HphI GGTGA 3 cut(s) 697, 785, 997
Hpy166II GTNNAC 1 cut(s) 436
Hpy188I TCNGA 4 cut(s) 45, 399, 645, 874
Hpy188III TCNNGA 6 cut(s) 106, 215, 456, 485, 656, 857
Hpy8I GTNNAC 1 cut(s) 436
HpyAV CCTTC 4 cut(s) 68, 145, 375, 703
HpyF10VI GCNNNNNNNGC 1 cut(s) 559
HpyF3I CTNAG 4 cut(s) 240, 474, 558, 637
Hsp92I GRCGYC 1 cut(s) 760
Hsp92II CATG 8 cut(s) 109, 139, 316, 342, 550, 573, 778, 860
HspAI GCGC 1 cut(s) 258
Kpn2I TCCGGA 1 cut(s) 655
Kzo9I GATC 5 cut(s) 102, 243, 265, 361, 922
LmnI GCTCC 3 cut(s) 550, 616, 676
Lsp1109I GCAGC 2 cut(s) 563, 700
LweI GCATC 9 cut(s) 115, 145, 186, 199, 420, 642, 762, 780, 814
MaeI CTAG 3 cut(s) 564, 830, 894
MaeIII GTNAC 1 cut(s) 595
MalI GATC 5 cut(s) 104, 245, 267, 363, 924
MboI GATC 5 cut(s) 102, 243, 265, 361, 922
MboII GAAGA 7 cut(s) 83, 112, 264, 412, 520, 845, 931
MflI RGATCY 2 cut(s) 243, 265
MhlI GDGCHC 1 cut(s) 996
MlyI GAGTC 1 cut(s) 227
MnlI CCTC 7 cut(s) 13, 109, 287, 597, 711, 868, 968
MroI TCCGGA 1 cut(s) 655
MroXI GAANNNNTTC 1 cut(s) 463
MseI TTAA 2 cut(s) 507, 513
MslI CAYNNNNRTG 1 cut(s) 186
MspA1I CMGCKG 2 cut(s) 557, 740
MspI CCGG 3 cut(s) 324, 656, 757
MspR9I CCNGG 1 cut(s) 765
MvaI CCWGG 1 cut(s) 765
MvnI CGCG 1 cut(s) 927
MwoI GCNNNNNNNGC 1 cut(s) 559
NcoI CCATGG 1 cut(s) 546
NdeII GATC 5 cut(s) 102, 243, 265, 361, 922
NlaIII CATG 8 cut(s) 109, 139, 316, 342, 550, 573, 778, 860
NlaIV GGNNCC 3 cut(s) 450, 552, 995
NspI RCATGY 2 cut(s) 342, 573
OliI CACNNNNGTG 1 cut(s) 186
PagI TCATGA 2 cut(s) 105, 856
PdmI GAANNNNTTC 1 cut(s) 463
PfeI GAWTC 1 cut(s) 869
PinAI ACCGGT 1 cut(s) 323
PkrI GCNGC 2 cut(s) 578, 715
PleI GAGTC 1 cut(s) 226
PpsI GAGTC 1 cut(s) 226
PpuMI RGGWCCY 1 cut(s) 448
Psp5II RGGWCCY 1 cut(s) 448
Psp6I CCWGG 1 cut(s) 763
PspGI CCWGG 1 cut(s) 763
PspN4I GGNNCC 3 cut(s) 450, 552, 995
PspPI GGNCC 2 cut(s) 326, 448
PspPPI RGGWCCY 1 cut(s) 448
PstI CTGCAG 1 cut(s) 718
PsuI RGATCY 2 cut(s) 243, 265
PvuII CAGCTG 2 cut(s) 557, 740
RsaI GTAC 2 cut(s) 391, 582
RsaNI GTAC 2 cut(s) 390, 581
RseI CAYNNNNRTG 1 cut(s) 186
SaqAI TTAA 2 cut(s) 507, 513
SatI GCNGC 2 cut(s) 577, 714
Sau3AI GATC 5 cut(s) 102, 243, 265, 361, 922
Sau96I GGNCC 2 cut(s) 326, 448
SchI GAGTC 1 cut(s) 227
ScrFI CCNGG 1 cut(s) 765
SduI GDGCHC 1 cut(s) 996
SfaNI GCATC 9 cut(s) 115, 145, 186, 199, 420, 642, 762, 780, 814
SfcI CTRYAG 2 cut(s) 261, 714
SinI GGWCC 2 cut(s) 326, 448
SmiMI CAYNNNNRTG 1 cut(s) 186
SmlI CTYRAG 1 cut(s) 215
SmoI CTYRAG 1 cut(s) 215
SsiI CCGC 2 cut(s) 906, 927
SspMI CTAG 3 cut(s) 564, 830, 894
StyD4I CCNGG 1 cut(s) 763
StyI CCWWGG 1 cut(s) 546
TaqI TCGA 3 cut(s) 14, 627, 781
TatI WGTACW 1 cut(s) 389
TfiI GAWTC 1 cut(s) 869
Tru1I TTAA 2 cut(s) 507, 513
Tru9I TTAA 2 cut(s) 507, 513
TscAI CASTG 4 cut(s) 165, 229, 340, 478
TseI GCWGC 2 cut(s) 576, 713
TspDTI ATGAA 6 cut(s) 122, 301, 302, 363, 722, 845
TspRI CASTG 4 cut(s) 165, 229, 340, 478
VpaK11BI GGWCC 2 cut(s) 326, 448
XapI RAATTY 5 cut(s) 23, 109, 884, 935, 978
XceI RCATGY 2 cut(s) 342, 573
XmnI GAANNNNTTC 1 cut(s) 463
XspI CTAG 3 cut(s) 564, 830, 894
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.