Rroxscaffold_5G00378150

AhpC/TSA antioxidant enzyme

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000005
OG0014726
Physical Location & Seq
Reverse (-)
58659647 .. 58661442
1796 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_5G00378150.1

Sequence Viewer

Length: 1152 bp
ATGGCTTCTTTTTCGATAGAGGAATTTGTTGGGAATGGAGTTCTGAAAGGACTAATTCCAAAGCTGTTAGAAGAAGGTTGGGATGATGTGCCAACCTTGAAGATCATGAATTTGGAGGATATGGATGCAATAAACATGACACAACAACAGAAAGTTGGTTATTTACAGACCCATGATGCACTGGAAATCAGGTCATACCTGCACGAGCGTGCTTTGATGCAATATGGAGATGCTCTTGAGTCCAGTGGGAAAGGTATGGCTGAGATCCTTACCATAGGCGCTGTAGATCTTTCTTCCCAGTTTGGTATGAAGCGAGGCCATATTGCTCGTTTCATGGACAGAACCGGTCCATCCAGTGCATGTGTAGATGAACCAAAAGCTGATCCTTCCCCTGCAACAAAAAGAATTAGCACACTTTCGAAGAATAATAGCATTTACAAGAGTTTCCAATCTGTAAACTCTCAAAAGGTCCCATCAAGAACTATTTCAATCACTGAGAAAACTCTTGAACAATCACTAGCGAGTTTTAAGATTAAGGATGGATACATCTTCAAAGGGATAGTTGCCATGGAGCCAGCTGAGCCTAGAGCATGTGGCTGCGTACAACCTCCTGCTGTAACTGACAAAATTGCTCCATACTCTGCTATTGAAAGCATCTCAGTTCAGAAGCTAACTCCGGAGTATAAAATTGGAATGGAGCATTTGGTGAAAACCAAAACTCCTCCAATGAAAGCTGCAGAACTATGGCGAAACAAACCAGCTGTGCTACTCTGCATCCGGCGTCCAGGGTGCATCATGTGTCGCGCTGAAGCTCACCAGCTATATGCCAAAAAACCACTATTTGATGCACTAGGAGTTCAGCTATTTGCAGTTCTTCATGAGTATCAGGAATCAGAGGTAAGAGAATTCTGGCCTAGATATTGGGGCGGTGCTGTAATATATGATCGCGGAATGGAATTCTTCAAAGCACTTGGTGGGGGGAAACTGCTGAAGGAAAAATTTCTCTCAGTTGGCAGTGGAAAAAGCGGCATTGCATACCAGTTTATTGAGAGGAATTTTGGTGATTGGGCACCAGTAGCTGAAGTCCTTGACATCTGTACTCAGTTGCAGGTGATTCTTGTTGGCCATTCCAATTATCTTCAGTCTGCATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
AhpC-TSA_2

Protein Analysis

383

Amino Acids

42.52

Weight (kDa)

8.04

Isoelectric Point (pI)

40.24

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
AhpC-TSA_2 PF13911 273 - 339 2.2e-08 AhpC/TSA antioxidant enzyme
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0014726)

Species Orthologous Gene IDs
fragaria_vesca FvH4_4g28930 FvH4_4g28930 FvH4_4g28930 FvH4_4g28930 FvH4_4g28930
malus_domestica MD13G1054900.v1.1 MD16G1053800.v1.1
rosa_chinensis RchiOBHm_Chr4g0437071
rosa_laevigata RLG00000006471
rosa_multiflora Rmu_ssc0000006.1_g000012
rosa_roxburghii Rroxscaffold_5G00378150
rosa_rugosa Rorug04G0298000
rosa_samantha Rh4AG352600 Rh4BG361900 Rh4CG376200 Rh4DG356100
rosa_wichuraiana Rw4G030870

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 1099
Acc36I ACCTGC 2 cut(s) 207, 1099
AccB1I GGYRCC 1 cut(s) 1069
AccII CGCG 2 cut(s) 804, 948
AccIII TCCGGA 1 cut(s) 676
AciI CCGC 3 cut(s) 927, 948, 1026
AclWI GGATC 2 cut(s) 259, 377
AcoI YGGCCR 1 cut(s) 1123
AcsI RAATTY 6 cut(s) 23, 109, 905, 956, 998, 1054
AcuI CTGAAG 4 cut(s) 828, 1010, 1101, 1124
AcyI GRCGYC 1 cut(s) 781
AdeI CACNNNGTG 1 cut(s) 974
AfaI GTAC 2 cut(s) 603, 1099
AgeI ACCGGT 1 cut(s) 344
AgsI TTSAA 6 cut(s) 100, 489, 509, 553, 650, 964
AjnI CCWGG 1 cut(s) 784
AleI CACNNNNGTG 1 cut(s) 207
AlwI GGATC 2 cut(s) 259, 377
AlwNI CAGNNNCTG 1 cut(s) 1079
Aor13HI TCCGGA 1 cut(s) 676
AoxI GGCC 3 cut(s) 316, 911, 1123
ApeKI GCWGC 2 cut(s) 597, 734
ApoI RAATTY 6 cut(s) 23, 109, 905, 956, 998, 1054
AsiGI ACCGGT 1 cut(s) 344
Asp700I GAANNNNTTC 2 cut(s) 484, 999
AspLEI GCGC 2 cut(s) 281, 806
AspS9I GGNCC 2 cut(s) 347, 469
AsuHPI GGTGA 4 cut(s) 718, 806, 1073, 1123
AsuII TTCGAA 1 cut(s) 419
AvaII GGWCC 2 cut(s) 347, 469
BaeGI GKGCMC 1 cut(s) 1072
BalI TGGCCA 1 cut(s) 1125
BanI GGYRCC 1 cut(s) 1069
BauI CACGAG 1 cut(s) 203
BbvI GCAGC 2 cut(s) 584, 721
BccI CCATC 3 cut(s) 358, 481, 533
BciT130I CCWGG 1 cut(s) 786
BciVI GTATCC 1 cut(s) 536
BfaI CTAG 4 cut(s) 518, 585, 851, 915
BfmI CTRYAG 2 cut(s) 282, 735
BfoI RGCGCY 1 cut(s) 282
BfuAI ACCTGC 2 cut(s) 207, 1099
BfuI GTATCC 1 cut(s) 536
BglII AGATCT 1 cut(s) 286
BisI GCNGC 3 cut(s) 598, 735, 1027
BlpI GCTNAGC 1 cut(s) 579
BlsI GCNGC 3 cut(s) 599, 736, 1028
Bme1390I CCNGG 1 cut(s) 786
Bme18I GGWCC 2 cut(s) 347, 469
BmgT120I GGNCC 2 cut(s) 347, 469
BmiI GGNNCC 3 cut(s) 471, 573, 1071
BmrFI CCNGG 1 cut(s) 786
BmrI ACTGGG 1 cut(s) 292
BmsI GCATC 8 cut(s) 115, 166, 207, 220, 663, 783, 801, 835
BmuI ACTGGG 1 cut(s) 292
Bpu1102I GCTNAGC 1 cut(s) 579
Bpu14I TTCGAA 1 cut(s) 419
BpuEI CTTGAG 1 cut(s) 257
BsaHI GRCGYC 1 cut(s) 781
BsaJI CCNNGG 2 cut(s) 567, 785
BsaWI WCCGGW 2 cut(s) 344, 676
BsaXI ACNNNNNCTCC 2 cut(s) 703, 733
Bse118I RCCGGY 1 cut(s) 344
Bse1I ACTGG 6 cut(s) 186, 243, 298, 354, 1039, 1073
Bse3DI GCAATG 1 cut(s) 1029
BseAI TCCGGA 1 cut(s) 676
BseBI CCWGG 1 cut(s) 786
BseDI CCNNGG 2 cut(s) 567, 785
BseGI GGATG 5 cut(s) 88, 130, 350, 544, 774
BseMI GCAATG 1 cut(s) 1029
BseMII CTCAG 6 cut(s) 252, 486, 570, 672, 1020, 1115
BseNI ACTGG 6 cut(s) 186, 243, 298, 354, 1039, 1073
BseRI GAGGAG 1 cut(s) 711
BseSI GKGCMC 1 cut(s) 1072
BseXI GCAGC 2 cut(s) 584, 721
BsgI GTGCAG 1 cut(s) 185
Bsh1236I CGCG 2 cut(s) 804, 948
BshFI GGCC 3 cut(s) 318, 913, 1125
BshNI GGYRCC 1 cut(s) 1069
BshTI ACCGGT 1 cut(s) 344
BsiSI CCGG 3 cut(s) 345, 677, 778
BslFI GGGAC 1 cut(s) 455
BsmFI GGGAC 1 cut(s) 455
BsnI GGCC 3 cut(s) 318, 913, 1125
Bsp119I TTCGAA 1 cut(s) 419
Bsp1286I GDGCHC 1 cut(s) 1072
Bsp13I TCCGGA 1 cut(s) 676
Bsp143I GATC 5 cut(s) 102, 264, 286, 382, 943
Bsp1720I GCTNAGC 1 cut(s) 579
Bsp19I CCATGG 1 cut(s) 567
BspACI CCGC 3 cut(s) 927, 948, 1026
BspANI GGCC 3 cut(s) 318, 913, 1125
BspCNI CTCAG 6 cut(s) 253, 487, 571, 671, 1019, 1114
BspEI TCCGGA 1 cut(s) 676
BspFNI CGCG 2 cut(s) 804, 948
BspHI TCATGA 2 cut(s) 105, 877
BspLI GGNNCC 3 cut(s) 471, 573, 1071
BspMAI CTGCAG 1 cut(s) 739
BspMI ACCTGC 2 cut(s) 207, 1099
BspPI GGATC 2 cut(s) 259, 377
BspT104I TTCGAA 1 cut(s) 419
BspT107I GGYRCC 1 cut(s) 1069
BsrDI GCAATG 1 cut(s) 1029
BsrFI RCCGGY 1 cut(s) 344
BsrI ACTGG 6 cut(s) 186, 243, 298, 354, 1039, 1073
BssAI RCCGGY 1 cut(s) 344
BssECI CCNNGG 2 cut(s) 567, 785
BssMI GATC 5 cut(s) 102, 264, 286, 382, 943
BssNI GRCGYC 1 cut(s) 781
BssSI CACGAG 1 cut(s) 203
BssT1I CCWWGG 1 cut(s) 567
Bst2BI CACGAG 1 cut(s) 203
Bst2UI CCWGG 1 cut(s) 786
BstACI GRCGYC 1 cut(s) 781
BstBI TTCGAA 1 cut(s) 419
BstC8I GCNNGC 2 cut(s) 210, 576
BstDEI CTNAG 6 cut(s) 261, 495, 579, 658, 1006, 1101
BstDSI CCRYGG 1 cut(s) 567
BstF5I GGATG 5 cut(s) 88, 130, 350, 544, 774
BstFNI CGCG 2 cut(s) 804, 948
BstH2I RGCGCY 1 cut(s) 282
BstHHI GCGC 2 cut(s) 281, 806
BstKTI GATC 5 cut(s) 105, 267, 289, 385, 946
BstMBI GATC 5 cut(s) 102, 264, 286, 382, 943
BstMWI GCNNNNNNNGC 2 cut(s) 580, 1076
BstNI CCWGG 1 cut(s) 786
BstNSI RCATGY 2 cut(s) 363, 594
BstSCI CCNGG 1 cut(s) 784
BstSFI CTRYAG 2 cut(s) 282, 735
BstSLI GKGCMC 1 cut(s) 1072
BstUI CGCG 2 cut(s) 804, 948
BstV1I GCAGC 2 cut(s) 584, 721
BstX2I RGATCY 2 cut(s) 264, 286
BstYI RGATCY 2 cut(s) 264, 286
BsuI GTATCC 1 cut(s) 536
BsuRI GGCC 3 cut(s) 318, 913, 1125
BtgI CCRYGG 1 cut(s) 567
BtsCI GGATG 5 cut(s) 88, 130, 350, 544, 774
BtsI GCAGTG 1 cut(s) 1021
BtsIMutI CAGTG 5 cut(s) 179, 250, 361, 492, 1021
BveI ACCTGC 2 cut(s) 207, 1099
Cac8I GCNNGC 2 cut(s) 210, 576
CaiI CAGNNNCTG 1 cut(s) 1079
CciI TCATGA 2 cut(s) 105, 877
CfoI GCGC 2 cut(s) 281, 806
Cfr10I RCCGGY 1 cut(s) 344
Cfr13I GGNCC 2 cut(s) 347, 469
CseI GACGC 1 cut(s) 770
Csp6I GTAC 2 cut(s) 602, 1098
CspAI ACCGGT 1 cut(s) 344
CviQI GTAC 2 cut(s) 602, 1098
DdeI CTNAG 6 cut(s) 261, 495, 579, 658, 1006, 1101
DpnI GATC 5 cut(s) 104, 266, 288, 384, 945
DpnII GATC 5 cut(s) 102, 264, 286, 382, 943
DraIII CACNNNGTG 1 cut(s) 974
EaeI YGGCCR 1 cut(s) 1123
Eco130I CCWWGG 1 cut(s) 567
Eco47I GGWCC 2 cut(s) 347, 469
Eco57I CTGAAG 4 cut(s) 828, 1010, 1101, 1124
EcoO109I RGGNCCY 1 cut(s) 469
EcoRI GAATTC 2 cut(s) 905, 956
EcoRII CCWGG 1 cut(s) 784
EcoT14I CCWWGG 1 cut(s) 567
ErhI CCWWGG 1 cut(s) 567
FaqI GGGAC 1 cut(s) 455
Fnu4HI GCNGC 3 cut(s) 598, 735, 1027
FokI GGATG 5 cut(s) 95, 137, 337, 551, 761
Fsp4HI GCNGC 3 cut(s) 598, 735, 1027
FspBI CTAG 4 cut(s) 518, 585, 851, 915
GlaI GCGC 2 cut(s) 280, 805
GluI GCNGC 3 cut(s) 598, 735, 1027
HaeII RGCGCY 1 cut(s) 282
HaeIII GGCC 3 cut(s) 318, 913, 1125
HapII CCGG 3 cut(s) 345, 677, 778
HgaI GACGC 1 cut(s) 770
HhaI GCGC 2 cut(s) 281, 806
Hin1I GRCGYC 1 cut(s) 781
Hin6I GCGC 2 cut(s) 279, 804
HinP1I GCGC 2 cut(s) 279, 804
HinfI GANTC 3 cut(s) 239, 890, 1114
HpaII CCGG 3 cut(s) 345, 677, 778
HphI GGTGA 4 cut(s) 718, 806, 1073, 1123
Hpy166II GTNNAC 1 cut(s) 457
Hpy188I TCNGA 3 cut(s) 45, 666, 895
Hpy188III TCNNGA 7 cut(s) 106, 236, 477, 506, 677, 878, 887
Hpy8I GTNNAC 1 cut(s) 457
HpyAV CCTTC 3 cut(s) 68, 396, 985
HpyF10VI GCNNNNNNNGC 2 cut(s) 580, 1076
HpyF3I CTNAG 6 cut(s) 261, 495, 579, 658, 1006, 1101
Hsp92I GRCGYC 1 cut(s) 781
HspAI GCGC 2 cut(s) 279, 804
Kpn2I TCCGGA 1 cut(s) 676
Kzo9I GATC 5 cut(s) 102, 264, 286, 382, 943
LmnI GCTCC 3 cut(s) 571, 637, 697
Lsp1109I GCAGC 2 cut(s) 584, 721
LweI GCATC 8 cut(s) 115, 166, 207, 220, 663, 783, 801, 835
MaeI CTAG 4 cut(s) 518, 585, 851, 915
MaeIII GTNAC 1 cut(s) 616
MalI GATC 5 cut(s) 104, 266, 288, 384, 945
MboI GATC 5 cut(s) 102, 264, 286, 382, 943
MboII GAAGA 8 cut(s) 83, 112, 285, 433, 541, 866, 952, 1130
MflI RGATCY 2 cut(s) 264, 286
MhlI GDGCHC 1 cut(s) 1072
MlsI TGGCCA 1 cut(s) 1125
MluNI TGGCCA 1 cut(s) 1125
MlyI GAGTC 1 cut(s) 248
MnlI CCTC 7 cut(s) 13, 109, 308, 618, 732, 889, 1044
Mox20I TGGCCA 1 cut(s) 1125
MroI TCCGGA 1 cut(s) 676
MroXI GAANNNNTTC 2 cut(s) 484, 999
MscI TGGCCA 1 cut(s) 1125
MseI TTAA 2 cut(s) 528, 534
MslI CAYNNNNRTG 1 cut(s) 207
Msp20I TGGCCA 1 cut(s) 1125
MspA1I CMGCKG 2 cut(s) 578, 761
MspI CCGG 3 cut(s) 345, 677, 778
MspR9I CCNGG 1 cut(s) 786
MvaI CCWGG 1 cut(s) 786
MvnI CGCG 2 cut(s) 804, 948
MwoI GCNNNNNNNGC 2 cut(s) 580, 1076
NcoI CCATGG 1 cut(s) 567
NdeII GATC 5 cut(s) 102, 264, 286, 382, 943
NlaIV GGNNCC 3 cut(s) 471, 573, 1071
NspI RCATGY 2 cut(s) 363, 594
NspV TTCGAA 1 cut(s) 419
OliI CACNNNNGTG 1 cut(s) 207
PagI TCATGA 2 cut(s) 105, 877
PaqCI CACCTGC 1 cut(s) 1099
PdmI GAANNNNTTC 2 cut(s) 484, 999
PfeI GAWTC 2 cut(s) 890, 1114
PinAI ACCGGT 1 cut(s) 344
PkrI GCNGC 3 cut(s) 599, 736, 1028
PleI GAGTC 1 cut(s) 247
PpsI GAGTC 1 cut(s) 247
PpuMI RGGWCCY 1 cut(s) 469
Psp5II RGGWCCY 1 cut(s) 469
Psp6I CCWGG 1 cut(s) 784
PspGI CCWGG 1 cut(s) 784
PspN4I GGNNCC 3 cut(s) 471, 573, 1071
PspPI GGNCC 2 cut(s) 347, 469
PspPPI RGGWCCY 1 cut(s) 469
PstI CTGCAG 1 cut(s) 739
PstNI CAGNNNCTG 1 cut(s) 1079
PsuI RGATCY 2 cut(s) 264, 286
PvuII CAGCTG 2 cut(s) 578, 761
RsaI GTAC 2 cut(s) 603, 1099
RsaNI GTAC 2 cut(s) 602, 1098
RseI CAYNNNNRTG 1 cut(s) 207
SaqAI TTAA 2 cut(s) 528, 534
SatI GCNGC 3 cut(s) 598, 735, 1027
Sau3AI GATC 5 cut(s) 102, 264, 286, 382, 943
Sau96I GGNCC 2 cut(s) 347, 469
SchI GAGTC 1 cut(s) 248
ScrFI CCNGG 1 cut(s) 786
SduI GDGCHC 1 cut(s) 1072
SfaNI GCATC 8 cut(s) 115, 166, 207, 220, 663, 783, 801, 835
SfcI CTRYAG 2 cut(s) 282, 735
SfuI TTCGAA 1 cut(s) 419
SinI GGWCC 2 cut(s) 347, 469
SmiMI CAYNNNNRTG 1 cut(s) 207
SmlI CTYRAG 1 cut(s) 236
SmoI CTYRAG 1 cut(s) 236
SsiI CCGC 3 cut(s) 927, 948, 1026
SspMI CTAG 4 cut(s) 518, 585, 851, 915
StyD4I CCNGG 1 cut(s) 784
StyI CCWWGG 1 cut(s) 567
TaqI TCGA 2 cut(s) 14, 419
TatI WGTACW 1 cut(s) 1097
TauI GCSGC 1 cut(s) 1029
TfiI GAWTC 2 cut(s) 890, 1114
Tru1I TTAA 2 cut(s) 528, 534
Tru9I TTAA 2 cut(s) 528, 534
TscAI CASTG 5 cut(s) 186, 250, 361, 499, 1021
TseI GCWGC 2 cut(s) 597, 734
TspDTI ATGAA 6 cut(s) 122, 322, 323, 384, 743, 866
TspRI CASTG 5 cut(s) 186, 250, 361, 499, 1021
VpaK11BI GGWCC 2 cut(s) 347, 469
XapI RAATTY 6 cut(s) 23, 109, 905, 956, 998, 1054
XceI RCATGY 2 cut(s) 363, 594
XmnI GAANNNNTTC 2 cut(s) 484, 999
XspI CTAG 4 cut(s) 518, 585, 851, 915
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.