FvH4_4g29720

pfkB family carbohydrate kinase

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb4
Physical Location & Seq
Forward (+)
29741611 .. 29745288
3678 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_4g29720.t2

Sequence Viewer

Length: 1665 bp
ATGGCTTTGCTATCTTTCACTCGCTTTCTACAACTACCCAGGTGCCATTTGGATTGGCCGAATAAGCTGTCACTTAATTTAGTTCAACTTCAGGGTTTTAGGTTACACAGTAAAAAATGGGGCCTTGCAGCTATGTCAAAAAAGATAAACAATTCAGAGAATTCGGGTTTAGATGGAGTGAATGAGGAGGAGGTTGTCGTGAAGAAGAAGAAGACAACTGGGACTACTAAACGGACTCGGAAGAAGACAGCTTCGGATAGTGATGCTTCGAGTGATGAAGATGTTGGTGAAGAGCCTAAGAAAAGGGGGAGACGTAAGAAAGCTGTATCTGCTTCGGTAAGTGTGGAGGGAGAGCAATCTGAGAAGAAGGTGAGGAAGAGAAGAACTAAGAAGAAGGTTGATGAGATTGCGAGCCAGGTTAGTGAAGCTGAAGTTAGTGATGCTGAGGAGCTTACATTTGTTTTGGATGTGAAGGATGAGACTGAGGATGATCTACAGTTGGAAATAGATGACGGAGAGGATATCAGCTATACTTATGGTTGGCCTCCTCTTGTGTGCTGCTTTGGAGCTGCACAACATGCTTTTGTGCCATCGGGAAGGCCAGCCAACAGACTCTTAGATTATGAAATACATGAAAGAAAGAAAGATGCATTATGGGCCCCTGAAAAGTTCATTAGGTCTCCTGGGGGATGTGCAGGTAGTGTGGCGATTGCTCTTGCAAGCTTGGGCGGCAAGGTTGCTTTCATGGGAAAACTTGGAGATGATGACTATGGCAAGGCCATGTTATATTATATGAATGCCAATAATGTTCAAACCCGGTCTGTTCGCATGGATAGTAGAAGGTCAACTGCAGTATCACAGATGAAGATTGGTAAAAGAAATCGCTTGAGATTGACTTGTGTCAGACCCTGTGCTGAGGATTCTTTAACAAAGTCAGAGATCAACATGGATGTGCTGAAGGAGGCAAAGATGTTCTACTTCAACACACATTCTCTGCTTGATCAAAACATGAGGTCAACTACACTCCAAGCAATCAAAATTGCAAAGCAGCTGGGCGGAGTTGTTTTCTATGATGTAAACCTTCCATTACCGTTGTGGCAGTCTTCTGAAGAAACTAAGTTGTTCATACAGCAAGTATGGAATATTGCTGATATTATTGAAGTTACTAAGCAAGAGCTTGAGTTTCTATGCGGAGTCCAGCCTTCTGAGGAATTCGACACCAAAGATAATGCCAGATCGAAGTTTGTTCACCATAGACGAGAAATGATTGCCCCACTTTGGCATGAAAACCTTAAGGTTTTGTTTGTGACAAATGGTACTTCTAAGATACATTACTATACAAAGGAACATGATGGTGCTGTTAATGGGATGGAGGATCCCCCTATTAGTCCTTTCACTTCTGATATGTCCGCATCTGGAGATGGTATTGTGGCAGCTCTCATGAGAATGTTGACAGTTCAACCACATCTAGTTACTGATAGAGAATATTTGGAGCATTCCATCAAGTATGCAATTGATTGTGGGGTCATAGATCAATGGTTGCTTGGGCGATCTAGGGGCTTCCCTCCTAGAGAAGATATGGAAGACGTGGTTACTGATCCAGATGGTATAAGATCTGTAACCGAAATGGAATATCGCACATTACCTGATGAGGTCCTTGCCTGA

Protein Analysis

555

Amino Acids

62.45

Weight (kDa)

6.24

Isoelectric Point (pI)

52.73

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PfkB PF00294 215 - 327 4.8e-15 pfkB family carbohydrate kinase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes (Group: OG0011232)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 686
AccB1I GGYRCC 1 cut(s) 42
AciI CCGC 4 cut(s) 729, 1056, 1191, 1410
AclWI GGATC 3 cut(s) 1370, 1383, 1592
AcoI YGGCCR 1 cut(s) 56
AcsI RAATTY 2 cut(s) 160, 1211
AcuI CTGAAG 4 cut(s) 74, 450, 977, 1128
AfaI GTAC 1 cut(s) 1318
AfiI CCNNNNNNNGG 1 cut(s) 1278
AflII CTTAAG 1 cut(s) 1292
AgsI TTSAA 5 cut(s) 86, 812, 982, 1160, 1460
AjiI CACGTC 1 cut(s) 1588
AjnI CCWGG 3 cut(s) 38, 414, 682
Alw26I GTCTC 3 cut(s) 304, 473, 684
AlwI GGATC 3 cut(s) 1370, 1383, 1592
AlwNI CAGNNNCTG 1 cut(s) 909
AoxI GGCC 6 cut(s) 56, 121, 542, 599, 657, 777
ApaI GGGCCC 1 cut(s) 661
ApeKI GCWGC 5 cut(s) 128, 558, 569, 1048, 1433
ApoI RAATTY 2 cut(s) 160, 1211
ArsI GACNNNNNNTTYG 2 cut(s) 53, 85
AspS9I GGNCC 4 cut(s) 121, 657, 658, 1654
AsuC2I CCSGG 1 cut(s) 817
AsuHPI GGTGA 3 cut(s) 299, 382, 1241
AvaII GGWCC 1 cut(s) 1654
BaeGI GKGCMC 1 cut(s) 661
BaeI ACNNNNGTAYC 2 cut(s) 837, 870
BamHI GGATCC 1 cut(s) 1375
BanI GGYRCC 1 cut(s) 42
BanII GRGCYC 1 cut(s) 661
BbsI GAAGAC 4 cut(s) 218, 251, 1095, 1590
BbvCI CCTCAGC 2 cut(s) 444, 915
BbvI GCAGC 5 cut(s) 140, 545, 556, 1060, 1445
BccI CCATC 7 cut(s) 167, 598, 1346, 1363, 1415, 1508, 1598
BciT130I CCWGG 3 cut(s) 40, 416, 684
BclI TGATCA 1 cut(s) 1000
BcnI CCSGG 1 cut(s) 817
BcoDI GTCTC 3 cut(s) 304, 473, 684
BfaI CTAG 3 cut(s) 1469, 1554, 1569
BfmI CTRYAG 2 cut(s) 494, 849
BfrI CTTAAG 1 cut(s) 1292
BfuAI ACCTGC 1 cut(s) 686
BglII AGATCT 1 cut(s) 1613
BisI GCNGC 6 cut(s) 129, 559, 570, 730, 1049, 1434
BlsI GCNGC 6 cut(s) 130, 560, 571, 731, 1050, 1435
Bme1390I CCNGG 4 cut(s) 40, 416, 684, 817
Bme18I GGWCC 1 cut(s) 1654
BmgBI CACGTC 1 cut(s) 1588
BmgT120I GGNCC 4 cut(s) 121, 657, 658, 1654
BmiI GGNNCC 5 cut(s) 44, 122, 659, 660, 1377
BmrFI CCNGG 4 cut(s) 40, 416, 684, 817
BmrI ACTGGG 1 cut(s) 228
BmsI GCATC 4 cut(s) 253, 430, 637, 1421
BmuI ACTGGG 1 cut(s) 228
BoxI GACNNNNGTC 1 cut(s) 899
BpiI GAAGAC 4 cut(s) 218, 251, 1095, 1590
BpmI CTGGAG 1 cut(s) 1437
Bpu10I CCTNAGC 2 cut(s) 444, 915
BpuEI CTTGAG 2 cut(s) 907, 1199
BpuMI CCSGG 1 cut(s) 817
BsaI GGTCTC 1 cut(s) 684
BsaJI CCNNGG 2 cut(s) 38, 683
Bsc4I CCNNNNNNNGG 1 cut(s) 1278
Bse1I ACTGG 1 cut(s) 223
BseBI CCWGG 3 cut(s) 40, 416, 684
BseDI CCNNGG 2 cut(s) 38, 683
BseGI GGATG 6 cut(s) 472, 481, 493, 695, 955, 1374
BseLI CCNNNNNNNGG 1 cut(s) 1278
BseMII CTCAG 5 cut(s) 351, 435, 474, 906, 1197
BseNI ACTGG 1 cut(s) 223
BseRI GAGGAG 4 cut(s) 200, 203, 461, 537
BseSI GKGCMC 1 cut(s) 661
BseXI GCAGC 5 cut(s) 140, 545, 556, 1060, 1445
BseYI CCCAGC 1 cut(s) 1051
BsgI GTGCAG 2 cut(s) 555, 714
BshFI GGCC 6 cut(s) 58, 123, 544, 601, 659, 779
BshNI GGYRCC 1 cut(s) 42
BsiSI CCGG 1 cut(s) 817
BslFI GGGAC 1 cut(s) 235
BslI CCNNNNNNNGG 1 cut(s) 1278
BsmAI GTCTC 3 cut(s) 304, 473, 684
BsmBI CGTCTC 1 cut(s) 304
BsmFI GGGAC 1 cut(s) 235
BsmI GAATGC 2 cut(s) 802, 1495
BsnI GGCC 6 cut(s) 58, 123, 544, 601, 659, 779
Bso31I GGTCTC 1 cut(s) 684
Bsp120I GGGCCC 1 cut(s) 657
Bsp1286I GDGCHC 1 cut(s) 661
Bsp143I GATC 9 cut(s) 490, 939, 1000, 1235, 1375, 1531, 1550, 1597, 1613
BspACI CCGC 4 cut(s) 729, 1056, 1191, 1410
BspANI GGCC 6 cut(s) 58, 123, 544, 601, 659, 779
BspCNI CTCAG 5 cut(s) 352, 436, 475, 907, 1198
BspHI TCATGA 1 cut(s) 1440
BspLI GGNNCC 5 cut(s) 44, 122, 659, 660, 1377
BspMAI CTGCAG 1 cut(s) 853
BspMI ACCTGC 1 cut(s) 686
BspPI GGATC 3 cut(s) 1370, 1383, 1592
BspQI GCTCTTC 1 cut(s) 285
BspT107I GGYRCC 1 cut(s) 42
BspTI CTTAAG 1 cut(s) 1292
BspTNI GGTCTC 1 cut(s) 684
BsrI ACTGG 1 cut(s) 223
BssECI CCNNGG 2 cut(s) 38, 683
BssMI GATC 9 cut(s) 490, 939, 1000, 1235, 1375, 1531, 1550, 1597, 1613
Bst2UI CCWGG 3 cut(s) 40, 416, 684
Bst4CI ACNGT 4 cut(s) 110, 498, 1092, 1456
Bst6I CTCTTC 2 cut(s) 285, 371
BstAFI CTTAAG 1 cut(s) 1292
BstAPI GCANNNNNTGC 1 cut(s) 578
BstC8I GCNNGC 3 cut(s) 412, 603, 721
BstF5I GGATG 6 cut(s) 472, 481, 493, 695, 955, 1374
BstKTI GATC 9 cut(s) 493, 942, 1003, 1238, 1378, 1534, 1553, 1600, 1616
BstMAI GTCTC 3 cut(s) 304, 473, 684
BstMBI GATC 9 cut(s) 490, 939, 1000, 1235, 1375, 1531, 1550, 1597, 1613
BstMWI GCNNNNNNNGC 5 cut(s) 64, 329, 578, 656, 729
BstNI CCWGG 3 cut(s) 40, 416, 684
BstNSI RCATGY 1 cut(s) 581
BstPAI GACNNNNGTC 1 cut(s) 899
BstSCI CCNGG 4 cut(s) 38, 414, 682, 815
BstSFI CTRYAG 2 cut(s) 494, 849
BstSLI GKGCMC 1 cut(s) 661
BstV1I GCAGC 5 cut(s) 140, 545, 556, 1060, 1445
BstV2I GAAGAC 4 cut(s) 218, 251, 1095, 1590
BstX2I RGATCY 2 cut(s) 1375, 1613
BstYI RGATCY 2 cut(s) 1375, 1613
BsuRI GGCC 6 cut(s) 58, 123, 544, 601, 659, 779
BtrI CACGTC 1 cut(s) 1588
BtsCI GGATG 6 cut(s) 472, 481, 493, 695, 955, 1374
BveI ACCTGC 1 cut(s) 686
Cac8I GCNNGC 3 cut(s) 412, 603, 721
CaiI CAGNNNCTG 1 cut(s) 909
CciI TCATGA 1 cut(s) 1440
Cfr13I GGNCC 4 cut(s) 121, 657, 658, 1654
Csp6I GTAC 1 cut(s) 1317
CviQI GTAC 1 cut(s) 1317
DpnI GATC 9 cut(s) 492, 941, 1002, 1237, 1377, 1533, 1552, 1599, 1615
DpnII GATC 9 cut(s) 490, 939, 1000, 1235, 1375, 1531, 1550, 1597, 1613
EaeI YGGCCR 1 cut(s) 56
Eam1104I CTCTTC 2 cut(s) 285, 371
EarI CTCTTC 2 cut(s) 285, 371
EciI GGCGGA 1 cut(s) 1071
Eco24I GRGCYC 1 cut(s) 661
Eco31I GGTCTC 1 cut(s) 684
Eco32I GATATC 1 cut(s) 523
Eco47I GGWCC 1 cut(s) 1654
Eco57I CTGAAG 4 cut(s) 74, 450, 977, 1128
EcoO109I RGGNCCY 3 cut(s) 121, 658, 1654
EcoRI GAATTC 2 cut(s) 160, 1211
EcoRII CCWGG 3 cut(s) 38, 414, 682
EcoRV GATATC 1 cut(s) 523
EcoT22I ATGCAT 1 cut(s) 652
EcoT38I GRGCYC 1 cut(s) 661
Esp3I CGTCTC 1 cut(s) 304
FaqI GGGAC 1 cut(s) 235
FbaI TGATCA 1 cut(s) 1000
Fnu4HI GCNGC 6 cut(s) 129, 559, 570, 730, 1049, 1434
FokI GGATG 6 cut(s) 479, 488, 500, 702, 962, 1381
FriOI GRGCYC 1 cut(s) 661
Fsp4HI GCNGC 6 cut(s) 129, 559, 570, 730, 1049, 1434
FspBI CTAG 3 cut(s) 1469, 1554, 1569
GluI GCNGC 6 cut(s) 129, 559, 570, 730, 1049, 1434
GsaI CCCAGC 1 cut(s) 1055
GsuI CTGGAG 1 cut(s) 1437
HaeIII GGCC 6 cut(s) 58, 123, 544, 601, 659, 779
HapII CCGG 1 cut(s) 817
HincII GTYRAC 3 cut(s) 846, 1017, 1452
HindII GTYRAC 3 cut(s) 846, 1017, 1452
HindIII AAGCTT 1 cut(s) 721
HinfI GANTC 4 cut(s) 235, 612, 920, 1194
HpaII CCGG 1 cut(s) 817
HphI GGTGA 3 cut(s) 299, 382, 1241
Hpy166II GTNNAC 5 cut(s) 846, 1017, 1078, 1249, 1452
Hpy188I TCNGA 9 cut(s) 157, 240, 256, 361, 905, 937, 1108, 1207, 1402
Hpy188III TCNNGA 5 cut(s) 199, 594, 1416, 1441, 1601
Hpy8I GTNNAC 5 cut(s) 846, 1017, 1078, 1249, 1452
HpyAV CCTTC 8 cut(s) 361, 388, 466, 591, 834, 952, 1091, 1212
HpyCH4III ACNGT 4 cut(s) 110, 498, 1092, 1456
HpyCH4IV ACGT 2 cut(s) 313, 1587
HpyCH4V TGCA 8 cut(s) 128, 572, 650, 695, 719, 851, 1043, 1511
HpyF10VI GCNNNNNNNGC 5 cut(s) 64, 329, 578, 656, 729
HpySE526I ACGT 2 cut(s) 313, 1587
Ksp22I TGATCA 1 cut(s) 1000
Kzo9I GATC 9 cut(s) 490, 939, 1000, 1235, 1375, 1531, 1550, 1597, 1613
LguI GCTCTTC 1 cut(s) 285
LmnI GCTCC 3 cut(s) 448, 566, 1492
Lsp1109I GCAGC 5 cut(s) 140, 545, 556, 1060, 1445
LweI GCATC 4 cut(s) 253, 430, 637, 1421
MaeI CTAG 3 cut(s) 1469, 1554, 1569
MaeII ACGT 2 cut(s) 313, 1587
MaeIII GTNAC 7 cut(s) 69, 102, 1162, 1306, 1471, 1591, 1618
MalI GATC 9 cut(s) 492, 941, 1002, 1237, 1377, 1533, 1552, 1599, 1615
MboI GATC 9 cut(s) 490, 939, 1000, 1235, 1375, 1531, 1550, 1597, 1613
MfeI CAATTG 1 cut(s) 1512
MflI RGATCY 2 cut(s) 1375, 1613
MhlI GDGCHC 1 cut(s) 661
MluCI AATT 6 cut(s) 76, 151, 160, 1038, 1211, 1512
MlyI GAGTC 3 cut(s) 229, 606, 1203
MmeI TCCRAC 1 cut(s) 480
Mph1103I ATGCAT 1 cut(s) 652
MseI TTAA 4 cut(s) 75, 926, 1293, 1362
MslI CAYNNNNRTG 3 cut(s) 950, 1353, 1445
MspA1I CMGCKG 1 cut(s) 1051
MspCI CTTAAG 1 cut(s) 1292
MspI CCGG 1 cut(s) 817
MspR9I CCNGG 4 cut(s) 40, 416, 684, 817
MunI CAATTG 1 cut(s) 1512
Mva1269I GAATGC 2 cut(s) 802, 1495
MvaI CCWGG 3 cut(s) 40, 416, 684
MwoI GCNNNNNNNGC 5 cut(s) 64, 329, 578, 656, 729
NciI CCSGG 1 cut(s) 817
NdeII GATC 9 cut(s) 490, 939, 1000, 1235, 1375, 1531, 1550, 1597, 1613
NlaIV GGNNCC 5 cut(s) 44, 122, 659, 660, 1377
NmuCI GTSAC 2 cut(s) 69, 1306
NsiI ATGCAT 1 cut(s) 652
NspI RCATGY 1 cut(s) 581
PagI TCATGA 1 cut(s) 1440
PciSI GCTCTTC 1 cut(s) 285
PctI GAATGC 2 cut(s) 802, 1495
PfeI GAWTC 1 cut(s) 920
PkrI GCNGC 6 cut(s) 130, 560, 571, 731, 1050, 1435
PleI GAGTC 3 cut(s) 229, 606, 1202
PpsI GAGTC 3 cut(s) 229, 606, 1202
PpuMI RGGWCCY 1 cut(s) 1654
PshAI GACNNNNGTC 1 cut(s) 899
Psp5II RGGWCCY 1 cut(s) 1654
Psp6I CCWGG 3 cut(s) 38, 414, 682
PspFI CCCAGC 1 cut(s) 1051
PspGI CCWGG 3 cut(s) 38, 414, 682
PspN4I GGNNCC 5 cut(s) 44, 122, 659, 660, 1377
PspOMI GGGCCC 1 cut(s) 657
PspPI GGNCC 4 cut(s) 121, 657, 658, 1654
PspPPI RGGWCCY 1 cut(s) 1654
PstI CTGCAG 1 cut(s) 853
PstNI CAGNNNCTG 1 cut(s) 909
PsuI RGATCY 2 cut(s) 1375, 1613
PvuII CAGCTG 1 cut(s) 1051
RsaI GTAC 1 cut(s) 1318
RsaNI GTAC 1 cut(s) 1317
RseI CAYNNNNRTG 3 cut(s) 950, 1353, 1445
SapI GCTCTTC 1 cut(s) 285
SaqAI TTAA 4 cut(s) 75, 926, 1293, 1362
SatI GCNGC 6 cut(s) 129, 559, 570, 730, 1049, 1434
Sau3AI GATC 9 cut(s) 490, 939, 1000, 1235, 1375, 1531, 1550, 1597, 1613
Sau96I GGNCC 4 cut(s) 121, 657, 658, 1654
SchI GAGTC 3 cut(s) 229, 606, 1203
ScrFI CCNGG 4 cut(s) 40, 416, 684, 817
SduI GDGCHC 1 cut(s) 661
SfaNI GCATC 4 cut(s) 253, 430, 637, 1421
SfcI CTRYAG 2 cut(s) 494, 849
SinI GGWCC 1 cut(s) 1654
SmiMI CAYNNNNRTG 3 cut(s) 950, 1353, 1445
SmlI CTYRAG 3 cut(s) 886, 1178, 1292
SmoI CTYRAG 3 cut(s) 886, 1178, 1292
Sse9I AATT 6 cut(s) 76, 151, 160, 1038, 1211, 1512
SsiI CCGC 4 cut(s) 729, 1056, 1191, 1410
SspI AATATT 2 cut(s) 1144, 1487
SspMI CTAG 3 cut(s) 1469, 1554, 1569
StyD4I CCNGG 4 cut(s) 38, 414, 682, 815
TaaI ACNGT 4 cut(s) 110, 498, 1092, 1456
TaiI ACGT 2 cut(s) 316, 1590
TaqI TCGA 3 cut(s) 269, 1215, 1238
TasI AATT 6 cut(s) 76, 151, 160, 1038, 1211, 1512
TauI GCSGC 1 cut(s) 732
TfiI GAWTC 1 cut(s) 920
Tru1I TTAA 4 cut(s) 75, 926, 1293, 1362
Tru9I TTAA 4 cut(s) 75, 926, 1293, 1362
TseFI GTSAC 2 cut(s) 69, 1306
TseI GCWGC 5 cut(s) 128, 558, 569, 1048, 1433
Tsp45I GTSAC 2 cut(s) 69, 1306
TspDTI ATGAA 9 cut(s) 291, 639, 648, 661, 733, 809, 878, 1114, 1299
TspGWI ACGGA 2 cut(s) 247, 528
Vha464I CTTAAG 1 cut(s) 1292
VpaK11BI GGWCC 1 cut(s) 1654
XapI RAATTY 2 cut(s) 160, 1211
XceI RCATGY 1 cut(s) 581
XcmI CCANNNNNNNNNTGG 2 cut(s) 46, 1092
XspI CTAG 3 cut(s) 1469, 1554, 1569
Zsp2I ATGCAT 1 cut(s) 652
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.