Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000004

Orthogroup ID

OG0006227

Physical Location & Seq

Genomic Coordinates Reverse (-)

48228159 .. 48231221

Gene Structure 3063 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug04G0306000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1719 bp

ATGGCTGCTGACCCCCAAGTTGCAGAGGAAGTAACATCAGCCAACGCTTCACTTCCGGATGCCAAGGGTTTGTCCACCATCATTCTCCATACCCGAACAGTCTGCAAAAGAAGGATAAAGGTGCCTGGCTGGAGGAGTGAGTTGTCTTCTGAAATTGATATCCAACATGAGAAAATAGTAAAGGAAGAAACACATGCAGTTGAACAAGGTGGTACTCCACCATCCAAGAATGATGCTGAAAAGCACGAAAAGGATAATTGTGAAGCAGAAAAGTCTGAAGGTTCAGAGACTTCTATCACTAGATCTGAAGAAACACCGGTGGTCAACCAGGTCGAGCCTCCTGTGGTTGCTGAGGTTGAGAAGGCTGATCATGTTCCAGTCCAAAATGTCAAAGCTGATCATCAGTGTCAACCAATTGAAGCAGTTAAAATTGAGGGAGAGAAACCATCAGTTGAAGCAGTTGAAAATGAGGAGAAAATAGCAGTTGAAGCAGTTGAGAAGGAGCTGGAGAAGACACAAACTATTGAAGCAATTGAGAATGAAGAAGCAGCGAAGGCACAGACTACTGAAGCAGTAATTGAGAATGAACCAGAGAAGACAGAAACTATTGAAGATGACAAGAATAAACCAGTGGAGGAAATAGCAATTGAAGCGGTTGACAAAGAAGCAGACAACACACCTGTAGAGGAAGTAGCAATTGAAGCTGTTGAAAATGAGCCAGAAATACAAGCTAGTGAAGCATGTGAGAAAAAAGAAGAGAAGAACATAGCAATTGAAGCAGTTGAGAAAGAATCAGAAATACTAGCTACTGCAGTATGTGAGGATAAAGCAGCGGATAAAATAGCAAGTGAAGCAGTTGAAAATGAACCAGAAACACAAGCTACTGAAGCATGTGAGGATAAAGCAGTGGAGAAAATAGCAATTGAAGCAGTTGAGAAAGAATCAGAGAAGACACAAGCCATTGAAGCAGATGAGAATAAACAAGAGGAGACACCAGCTATTGAAGAACAGAGAGATTCCACGCCCAAAATTGAAGCTTTTGAGTCTAATCCATCAAGTGAAATAGTCAAGCTTGAAGAAAATGTTCAGGGTGAGAAGGGGACTACTGCCGATGAGGGCAAGACTGCTTGTGAGTTAACAACGAACAAGGAAGCTCAAACGGTCGAGAAAGAAGCAGGTGTGGTTGATAATATTAAGGACGAGACAATGCAGAGTGAAAAAGCTGCTGAGAAGGAAGAAGAGTGTGTGAAAGTAGCACAAGCAACTAAAGAGAGTGAGGAGAAAACTGAAGAAGCATCATTTGAAAATGAAGCAAAGAAAACTGAGGATGGTACTAATGAACTCAAAAATGCTACAGATCAAGTTATTGAAAAATCAGTAGCGGGGGAGCAGAAGAGTGATAGAGATTTGGTTGAGGGTTTAGTCAAAGAAGATGAGTATAAGGACATTAAGGTGAATGGAGAAGAAGAGAAAAACAAGTCCAAAACTGATGTACCCCCAACTCTTGAGTCATGCAAAGATGGTGATCATGAGACTCAAACATCCAAAGACCAAGCACAAGATGTTTCAGTTAAACCAGCACAGAAGCAATCAGGTAACAATATAATTTCAAAGGTGAAGCAATCTTTAGTGAAGGTGAAGAAAGCTATAATTGGGAGATCTCCCAGCTCAAAAGTCCTTTCACCTGAAATCAAAGGAGATCATGAAAATGTGAAATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000427 GO:0000428 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006139 GO:0006351 GO:0006355 GO:0006725 GO:0006807 GO:0006996 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009295 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0009657 GO:0009658 GO:0009662 GO:0009889 GO:0009987 GO:0010467 GO:0010468 GO:0010556 GO:0016043 GO:0016070 GO:0018130 GO:0019219 GO:0019222 GO:0019438 GO:0030880 GO:0031323 GO:0031326 GO:0032774 GO:0032991 GO:0034641 GO:0034645 GO:0034654 GO:0042644 GO:0042646 GO:0042793 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044271 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0046483 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0061695 GO:0065007 GO:0071704 GO:0071840 GO:0080090 GO:0090304 GO:0097659 GO:1901360 GO:1901362 GO:1901576 GO:1902494 GO:1903506 GO:1990234 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PfkB

Protein Analysis

572

Amino Acids

62.68

Weight (kDa)

4.5

Isoelectric Point (pI)

60.64

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0006227)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G13700 AT1G13700 AT1G13700
fragaria_vesca	FvH4_4g29730 FvH4_4g29730 FvH4_4g29730 FvH4_4g29730
malus_domestica	MD13G1060200.v1.1 MD16G1059500.v1.1
prunus_persica	Prupe.1G289200_v2.0.a1 Prupe.1G289200_v2.0.a1
pyrus_communis	pycom13g05360 pycom16g05190
rosa_chinensis	RchiOBHm_Chr4g0437981
rosa_laevigata	RLG00000006396
rosa_multiflora	Rmu_sc0007538.1_g000007
rosa_roxburghii	Rroxscaffold_5G00379140
rosa_rugosa	Rorug04G0306000 Rorug04G0306100 Rorug04G0306100 Rorug04G0306100
rosa_samantha	Rh4AG357700 Rh4BG368600 Rh4CG382700 Rh4DG363500
rosa_wichuraiana	Rw0G011500 Rw0G016170

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	1166
Acc36I	ACCTGC	1 cut(s)	1166
AccB1I	GGYRCC	1 cut(s)	121
AccIII	TCCGGA	1 cut(s)	55
AciI	CCGC	3 cut(s)	653, 833, 1382
AcuI	CTGAAG	5 cut(s)	297, 327, 588, 906, 1308
AfaI	GTAC	3 cut(s)	214, 1333, 1494
AgeI	ACCGGT	1 cut(s)	316
AjnI	CCWGG	2 cut(s)	124, 327
Alw26I	GTCTC	4 cut(s)	281, 983, 1196, 1526
Aor13HI	TCCGGA	1 cut(s)	55
ApeKI	GCWGC	4 cut(s)	5, 548, 830, 1223
AsiGI	ACCGGT	1 cut(s)	316
Asp700I	GAANNNNTTC	1 cut(s)	1083
AsuHPI	GGTGA	6 cut(s)	1103, 1465, 1535, 1627, 1648, 1674
BaeI	ACNNNNGTAYC	2 cut(s)	1476, 1509
BanI	GGYRCC	1 cut(s)	121
BbsI	GAAGAC	4 cut(s)	138, 518, 602, 956
BbvCI	CCTCAGC	1 cut(s)	351
BbvI	GCAGC	3 cut(s)	560, 842, 1210
BccI	CCATC	6 cut(s)	86, 229, 454, 1060, 1322, 1514
BcgI	CGANNNNNNTGC	2 cut(s)	84, 118
BciT130I	CCWGG	2 cut(s)	126, 329
BclI	TGATCA	3 cut(s)	367, 397, 1525
BcoDI	GTCTC	4 cut(s)	281, 983, 1196, 1526
BfaI	CTAG	3 cut(s)	300, 732, 803
BfmI	CTRYAG	3 cut(s)	681, 810, 1353
BfuAI	ACCTGC	1 cut(s)	1166
BglII	AGATCT	2 cut(s)	302, 1658
BisI	GCNGC	4 cut(s)	6, 549, 831, 1224
BlsI	GCNGC	4 cut(s)	7, 550, 832, 1225
Bme1390I	CCNGG	2 cut(s)	126, 329
BmiI	GGNNCC	1 cut(s)	123
BmrFI	CCNGG	2 cut(s)	126, 329
BmsI	GCATC	3 cut(s)	49, 223, 1304
BpiI	GAAGAC	4 cut(s)	138, 518, 602, 956
BpmI	CTGGAG	2 cut(s)	151, 527
Bpu10I	CCTNAGC	1 cut(s)	351
BpuEI	CTTGAG	1 cut(s)	1526
BsaBI	GATNNNNATC	1 cut(s)	1524
BsaJI	CCNNGG	1 cut(s)	63
BsaWI	WCCGGW	2 cut(s)	55, 316
Bse118I	RCCGGY	1 cut(s)	316
Bse1I	ACTGG	2 cut(s)	377, 629
Bse8I	GATNNNNATC	1 cut(s)	1524
BseAI	TCCGGA	1 cut(s)	55
BseBI	CCWGG	2 cut(s)	126, 329
BseDI	CCNNGG	1 cut(s)	63
BseGI	GGATG	4 cut(s)	64, 221, 1333, 1541
BseJI	GATNNNNATC	1 cut(s)	1524
BseMII	CTCAG	3 cut(s)	342, 1218, 1314
BseNI	ACTGG	2 cut(s)	377, 629
BseRI	GAGGAG	4 cut(s)	148, 485, 1001, 1292
BseXI	GCAGC	3 cut(s)	560, 842, 1210
BseYI	CCCAGC	1 cut(s)	1664
Bsh1285I	CGRYCG	1 cut(s)	1164
BshNI	GGYRCC	1 cut(s)	121
BshTI	ACCGGT	1 cut(s)	316
BsiEI	CGRYCG	1 cut(s)	1164
BsiSI	CCGG	2 cut(s)	56, 317
BslFI	GGGAC	1 cut(s)	1114
BsmAI	GTCTC	4 cut(s)	281, 983, 1196, 1526
BsmFI	GGGAC	1 cut(s)	1114
Bsp13I	TCCGGA	1 cut(s)	55
Bsp143I	GATC	7 cut(s)	302, 367, 397, 1357, 1525, 1658, 1699
BspACI	CCGC	3 cut(s)	653, 833, 1382
BspCNI	CTCAG	3 cut(s)	343, 1219, 1315
BspEI	TCCGGA	1 cut(s)	55
BspHI	TCATGA	2 cut(s)	1528, 1702
BspLI	GGNNCC	1 cut(s)	123
BspMAI	CTGCAG	1 cut(s)	814
BspMI	ACCTGC	1 cut(s)	1166
BspT107I	GGYRCC	1 cut(s)	121
BsrFI	RCCGGY	1 cut(s)	316
BsrI	ACTGG	2 cut(s)	377, 629
BssAI	RCCGGY	1 cut(s)	316
BssECI	CCNNGG	1 cut(s)	63
BssMI	GATC	7 cut(s)	302, 367, 397, 1357, 1525, 1658, 1699
BssT1I	CCWWGG	1 cut(s)	63
Bst2UI	CCWGG	2 cut(s)	126, 329
Bst4CI	ACNGT	2 cut(s)	100, 1162
Bst6I	CTCTTC	4 cut(s)	750, 1233, 1388, 1461
BstDEI	CTNAG	3 cut(s)	351, 1227, 1323
BstF5I	GGATG	4 cut(s)	64, 221, 1333, 1541
BstKTI	GATC	7 cut(s)	305, 370, 400, 1360, 1528, 1661, 1702
BstMAI	GTCTC	4 cut(s)	281, 983, 1196, 1526
BstMBI	GATC	7 cut(s)	302, 367, 397, 1357, 1525, 1658, 1699
BstMCI	CGRYCG	1 cut(s)	1164
BstNI	CCWGG	2 cut(s)	126, 329
BstNSI	RCATGY	3 cut(s)	197, 744, 894
BstSCI	CCNGG	2 cut(s)	124, 327
BstSFI	CTRYAG	3 cut(s)	681, 810, 1353
BstV1I	GCAGC	3 cut(s)	560, 842, 1210
BstV2I	GAAGAC	4 cut(s)	138, 518, 602, 956
BstX2I	RGATCY	2 cut(s)	302, 1658
BstYI	RGATCY	2 cut(s)	302, 1658
BtsCI	GGATG	4 cut(s)	64, 221, 1333, 1541
BtsI	GCAGTG	1 cut(s)	912
BtsIMutI	CAGTG	3 cut(s)	410, 636, 912
BveI	ACCTGC	1 cut(s)	1166
CciI	TCATGA	2 cut(s)	1528, 1702
Cfr10I	RCCGGY	1 cut(s)	316
CsiI	ACCWGGT	1 cut(s)	327
Csp6I	GTAC	3 cut(s)	213, 1332, 1493
CspAI	ACCGGT	1 cut(s)	316
CviAII	CATG	8 cut(s)	167, 194, 371, 741, 891, 1512, 1529, 1703
CviQI	GTAC	3 cut(s)	213, 1332, 1493
DdeI	CTNAG	3 cut(s)	351, 1227, 1323
DpnI	GATC	7 cut(s)	304, 369, 399, 1359, 1527, 1660, 1701
DpnII	GATC	7 cut(s)	302, 367, 397, 1357, 1525, 1658, 1699
Eam1104I	CTCTTC	4 cut(s)	750, 1233, 1388, 1461
EarI	CTCTTC	4 cut(s)	750, 1233, 1388, 1461
Eco130I	CCWWGG	1 cut(s)	63
Eco32I	GATATC	1 cut(s)	160
Eco57I	CTGAAG	5 cut(s)	297, 327, 588, 906, 1308
EcoRII	CCWGG	2 cut(s)	124, 327
EcoRV	GATATC	1 cut(s)	160
EcoT14I	CCWWGG	1 cut(s)	63
ErhI	CCWWGG	1 cut(s)	63
FaeI	CATG	8 cut(s)	170, 197, 374, 744, 894, 1515, 1532, 1706
FaqI	GGGAC	1 cut(s)	1114
FatI	CATG	8 cut(s)	166, 193, 370, 740, 890, 1511, 1528, 1702
FauI	CCCGC	1 cut(s)	1375
FbaI	TGATCA	3 cut(s)	367, 397, 1525
Fnu4HI	GCNGC	4 cut(s)	6, 549, 831, 1224
FokI	GGATG	4 cut(s)	71, 208, 1340, 1528
Fsp4HI	GCNGC	4 cut(s)	6, 549, 831, 1224
FspBI	CTAG	3 cut(s)	300, 732, 803
GluI	GCNGC	4 cut(s)	6, 549, 831, 1224
GsaI	CCCAGC	1 cut(s)	1668
GsuI	CTGGAG	2 cut(s)	151, 527
HapII	CCGG	2 cut(s)	56, 317
Hin1II	CATG	8 cut(s)	170, 197, 374, 744, 894, 1515, 1532, 1706
HincII	GTYRAC	4 cut(s)	325, 410, 658, 1137
HindII	GTYRAC	4 cut(s)	325, 410, 658, 1137
HindIII	AAGCTT	2 cut(s)	1035, 1070
HinfI	GANTC	6 cut(s)	791, 941, 1016, 1043, 1508, 1534
HpaI	GTTAAC	1 cut(s)	1137
HpaII	CCGG	2 cut(s)	56, 317
HphI	GGTGA	6 cut(s)	1103, 1465, 1535, 1627, 1648, 1674
Hpy166II	GTNNAC	5 cut(s)	75, 325, 410, 658, 1137
Hpy188I	TCNGA	6 cut(s)	151, 277, 286, 307, 796, 946
Hpy188III	TCNNGA	5 cut(s)	56, 1165, 1505, 1529, 1703
Hpy8I	GTNNAC	5 cut(s)	75, 325, 410, 658, 1137
HpyAV	CCTTC	8 cut(s)	105, 272, 355, 493, 547, 1090, 1225, 1627
HpyCH4III	ACNGT	2 cut(s)	100, 1162
HpyCH4V	TGCA	6 cut(s)	23, 105, 197, 812, 1210, 1515
HpyF3I	CTNAG	3 cut(s)	351, 1227, 1323
Hsp92II	CATG	8 cut(s)	170, 197, 374, 744, 894, 1515, 1532, 1706
Kpn2I	TCCGGA	1 cut(s)	55
Ksp22I	TGATCA	3 cut(s)	367, 397, 1525
KspAI	GTTAAC	1 cut(s)	1137
Kzo9I	GATC	7 cut(s)	302, 367, 397, 1357, 1525, 1658, 1699
LmnI	GCTCC	2 cut(s)	502, 1387
Lsp1109I	GCAGC	3 cut(s)	560, 842, 1210
LweI	GCATC	3 cut(s)	49, 223, 1304
MabI	ACCWGGT	1 cut(s)	327
MaeI	CTAG	3 cut(s)	300, 732, 803
MaeIII	GTNAC	2 cut(s)	31, 1595
MalI	GATC	7 cut(s)	304, 369, 399, 1359, 1527, 1660, 1701
MboI	GATC	7 cut(s)	302, 367, 397, 1357, 1525, 1658, 1699
MfeI	CAATTG	6 cut(s)	414, 531, 645, 696, 771, 921
MflI	RGATCY	2 cut(s)	302, 1658
MlyI	GAGTC	3 cut(s)	1052, 1517, 1528
MmeI	TCCRAC	1 cut(s)	187
MroI	TCCGGA	1 cut(s)	55
MroXI	GAANNNNTTC	1 cut(s)	1083
MseI	TTAA	5 cut(s)	426, 1136, 1194, 1449, 1572
MslI	CAYNNNNRTG	2 cut(s)	1451, 1707
MspA1I	CMGCKG	1 cut(s)	833
MspI	CCGG	2 cut(s)	56, 317
MspR9I	CCNGG	2 cut(s)	126, 329
MunI	CAATTG	6 cut(s)	414, 531, 645, 696, 771, 921
MvaI	CCWGG	2 cut(s)	126, 329
NdeII	GATC	7 cut(s)	302, 367, 397, 1357, 1525, 1658, 1699
NlaIII	CATG	8 cut(s)	170, 197, 374, 744, 894, 1515, 1532, 1706
NlaIV	GGNNCC	1 cut(s)	123
NspI	RCATGY	3 cut(s)	197, 744, 894
PagI	TCATGA	2 cut(s)	1528, 1702
PaqCI	CACCTGC	1 cut(s)	1166
PdmI	GAANNNNTTC	1 cut(s)	1083
PfeI	GAWTC	3 cut(s)	791, 941, 1016
PinAI	ACCGGT	1 cut(s)	316
PkrI	GCNGC	4 cut(s)	7, 550, 832, 1225
PleI	GAGTC	3 cut(s)	1051, 1516, 1528
PpsI	GAGTC	3 cut(s)	1051, 1516, 1528
Psp6I	CCWGG	2 cut(s)	124, 327
PspFI	CCCAGC	1 cut(s)	1664
PspGI	CCWGG	2 cut(s)	124, 327
PspN4I	GGNNCC	1 cut(s)	123
PstI	CTGCAG	1 cut(s)	814
PsuI	RGATCY	2 cut(s)	302, 1658
RsaI	GTAC	3 cut(s)	214, 1333, 1494
RsaNI	GTAC	3 cut(s)	213, 1332, 1493
RseI	CAYNNNNRTG	2 cut(s)	1451, 1707
SaqAI	TTAA	5 cut(s)	426, 1136, 1194, 1449, 1572
SatI	GCNGC	4 cut(s)	6, 549, 831, 1224
Sau3AI	GATC	7 cut(s)	302, 367, 397, 1357, 1525, 1658, 1699
SchI	GAGTC	3 cut(s)	1052, 1517, 1528
ScrFI	CCNGG	2 cut(s)	126, 329
SexAI	ACCWGGT	1 cut(s)	327
SfaNI	GCATC	3 cut(s)	49, 223, 1304
SfcI	CTRYAG	3 cut(s)	681, 810, 1353
SgrAI	CRCCGGYG	1 cut(s)	316
SmiMI	CAYNNNNRTG	2 cut(s)	1451, 1707
SmlI	CTYRAG	1 cut(s)	1505
SmoI	CTYRAG	1 cut(s)	1505
SsiI	CCGC	3 cut(s)	653, 833, 1382
SspI	AATATT	1 cut(s)	1192
SspMI	CTAG	3 cut(s)	300, 732, 803
StyD4I	CCNGG	2 cut(s)	124, 327
StyI	CCWWGG	1 cut(s)	63
TaaI	ACNGT	2 cut(s)	100, 1162
TaqI	TCGA	2 cut(s)	333, 1164
TfiI	GAWTC	3 cut(s)	791, 941, 1016
Tru1I	TTAA	5 cut(s)	426, 1136, 1194, 1449, 1572
Tru9I	TTAA	5 cut(s)	426, 1136, 1194, 1449, 1572
TscAI	CASTG	3 cut(s)	410, 636, 912
TseI	GCWGC	4 cut(s)	5, 548, 830, 1223
TspDTI	ATGAA	6 cut(s)	555, 600, 879, 1323, 1353, 1719
TspRI	CASTG	3 cut(s)	410, 636, 912
XceI	RCATGY	3 cut(s)	197, 744, 894
XmnI	GAANNNNTTC	1 cut(s)	1083
XspI	CTAG	3 cut(s)	300, 732, 803

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.