Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb4

Orthogroup ID

OG0006227

Physical Location & Seq

Genomic Coordinates Reverse (-)

29745865 .. 29749987

Gene Structure 4123 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_4g29730.t2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 798 bp

ATGGCTCTTTCCGAAGTTCGTAAAGATAGAGAGTTGAGAATTCATGAAAGTTTGGATGAGCTTAGCGCTGTTTTGGCAGACTACATTGCTGAAATATCAGAGGCAGCGGTGAAGGAGCGCGGCGTTTTTGCAATGGCTTTATCTGGTGGTTCTCTCATTGGCTTAATGAGAAAACTGTGTCAAGCTCCTTATAACAAGACTGTAGACTGGGACAAGTGGTATATTTTTTGGGCTGACGAGCGTGTTGTGGCAAAAAATCATGTTGATAGCAATTACAAGCTTGCAAAGGATCTGTTTTTGTCTAAGGTACCTATTATTCCGAGCCATGTGCATTCCATTAATGATTCAGTGTCAGCAGAGGAGGCATCTGATGAGTATGAGTTTGTCATTCGACAGTTGGTGAAATCTCGTGTGATCAGTGTGTCAGATATAAGTGACTGCCCCAAATTTGACCTGATCCTCCTAGGAATGGGCTCCGATGGCCATGTTGCCTCATTATTCCCTAACCACTCAGTGCTCGAGGAGAAAGATGAGTGGGTAACCTATCTAACTGATTCCCCCAAACCTCCACCTGAGAGAATTACATTCACTTTGCCTGTTATCAACTCAGCATCCAACGTAGCTATAGTTGTGACTGGTGAAAGCAAAGCTGAGGCTGCACACCTTGCAATAGATGGTGTGGATCCGAACTTCGCATCAGTTCCTGCAGGAATTGTCCAGCCACTGAAGGGTAAGTTGGTGTGGTTTATGGATAAACCAGCAGCCTCAAAACTCGATGGCTTTCAATTTTCGGAGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006081 GO:0006098 GO:0006139 GO:0006725 GO:0006732 GO:0006733 GO:0006739 GO:0006753 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0009051 GO:0009117 GO:0009987 GO:0016787 GO:0016788 GO:0017057 GO:0019362 GO:0019637 GO:0019682 GO:0019693 GO:0034641 GO:0044237 GO:0044238 GO:0044281 GO:0044424 GO:0044444 GO:0044464 GO:0046483 GO:0046496 GO:0051156 GO:0051186 GO:0052689 GO:0055086 GO:0071704 GO:0072524 GO:1901135 GO:1901360 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko00030 ko01100 ko01110 ko01120 ko01130 ko01200 map00030 map01100 map01110 map01120 map01130 map01200

Pfam Domains

Protein Families

Glucosamine_iso

Protein Analysis

266

Amino Acids

29.26

Weight (kDa)

5.07

Isoelectric Point (pI)

24.59

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Glucosamine_iso	PF01182	18 - 248	2.2e-72	Glucosamine-6-phosphate isomerases/6-phosphogluconolactonase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0006227)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G13700 AT1G13700 AT1G13700
fragaria_vesca	FvH4_4g29730 FvH4_4g29730 FvH4_4g29730 FvH4_4g29730
malus_domestica	MD13G1060200.v1.1 MD16G1059500.v1.1
prunus_persica	Prupe.1G289200_v2.0.a1 Prupe.1G289200_v2.0.a1
pyrus_communis	pycom13g05360 pycom16g05190
rosa_chinensis	RchiOBHm_Chr4g0437981
rosa_laevigata	RLG00000006396
rosa_multiflora	Rmu_sc0007538.1_g000007
rosa_roxburghii	Rroxscaffold_5G00379140
rosa_rugosa	Rorug04G0306000 Rorug04G0306100 Rorug04G0306100 Rorug04G0306100
rosa_samantha	Rh4AG357700 Rh4BG368600 Rh4CG382700 Rh4DG363500
rosa_wichuraiana	Rw0G011500 Rw0G016170

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	192
Acc65I	GGTACC	1 cut(s)	307
AccB1I	GGYRCC	1 cut(s)	307
AccI	GTMKAC	1 cut(s)	204
AccII	CGCG	1 cut(s)	120
AciI	CCGC	2 cut(s)	107, 120
AclWI	GGATC	4 cut(s)	297, 451, 677, 690
AcoI	YGGCCR	1 cut(s)	481
AcsI	RAATTY	2 cut(s)	39, 446
AcuI	CTGAAG	1 cut(s)	746
AdeI	CACNNNGTG	1 cut(s)	514
AfaI	GTAC	1 cut(s)	309
AfeI	AGCGCT	1 cut(s)	67
AfiI	CCNNNNNNNGG	2 cut(s)	469, 728
AgsI	TTSAA	1 cut(s)	785
AjuI	GAANNNNNNNTTGG	2 cut(s)	719, 751
AluBI	AGCT	5 cut(s)	61, 185, 280, 623, 650
AluI	AGCT	5 cut(s)	61, 185, 280, 623, 650
Alw21I	GWGCWC	1 cut(s)	519
AlwI	GGATC	4 cut(s)	297, 451, 677, 690
AlwNI	CAGNNNCTG	2 cut(s)	704, 724
Ama87I	CYCGRG	1 cut(s)	518
Aor51HI	AGCGCT	1 cut(s)	67
AoxI	GGCC	1 cut(s)	481
ApeKI	GCWGC	3 cut(s)	104, 656, 761
ApoI	RAATTY	2 cut(s)	39, 446
AseI	ATTAAT	1 cut(s)	339
Asp718I	GGTACC	1 cut(s)	307
AspA2I	CCTAGG	1 cut(s)	463
AspLEI	GCGC	2 cut(s)	68, 120
AsuHPI	GGTGA	3 cut(s)	121, 412, 650
AvaI	CYCGRG	1 cut(s)	518
AvrII	CCTAGG	1 cut(s)	463
BalI	TGGCCA	1 cut(s)	483
BamHI	GGATCC	1 cut(s)	682
BanI	GGYRCC	1 cut(s)	307
BanII	GRGCYC	1 cut(s)	476
BauI	CACGAG	1 cut(s)	408
Bbv12I	GWGCWC	1 cut(s)	519
BbvCI	CCTCAGC	1 cut(s)	651
BbvI	GCAGC	3 cut(s)	116, 643, 773
BccI	CCATC	3 cut(s)	473, 668, 770
BcgI	CGANNNNNNTGC	2 cut(s)	310, 344
BclI	TGATCA	1 cut(s)	414
BfaI	CTAG	1 cut(s)	464
BfmI	CTRYAG	3 cut(s)	201, 624, 705
BfoI	RGCGCY	1 cut(s)	69
BisI	GCNGC	4 cut(s)	105, 121, 657, 762
BlnI	CCTAGG	1 cut(s)	463
BlpI	GCTNAGC	1 cut(s)	62
BlsI	GCNGC	4 cut(s)	106, 122, 658, 763
BmeT110I	CYCGRG	1 cut(s)	518
BmiI	GGNNCC	3 cut(s)	309, 475, 684
BmrI	ACTGGG	1 cut(s)	217
BmsI	GCATC	3 cut(s)	374, 620, 704
BmuI	ACTGGG	1 cut(s)	217
Bpu10I	CCTNAGC	1 cut(s)	651
Bpu1102I	GCTNAGC	1 cut(s)	62
BsaJI	CCNNGG	1 cut(s)	463
Bsc4I	CCNNNNNNNGG	2 cut(s)	469, 728
Bse1I	ACTGG	2 cut(s)	212, 640
Bse3DI	GCAATG	2 cut(s)	84, 138
BseDI	CCNNGG	1 cut(s)	463
BseGI	GGATG	2 cut(s)	61, 611
BseLI	CCNNNNNNNGG	2 cut(s)	469, 728
BseMI	GCAATG	2 cut(s)	84, 138
BseMII	CTCAG	4 cut(s)	525, 564, 621, 642
BseNI	ACTGG	2 cut(s)	212, 640
BseRI	GAGGAG	2 cut(s)	374, 536
BseXI	GCAGC	3 cut(s)	116, 643, 773
BsgI	GTGCAG	1 cut(s)	642
Bsh1236I	CGCG	1 cut(s)	120
BshFI	GGCC	1 cut(s)	483
BshNI	GGYRCC	1 cut(s)	307
BsiHKAI	GWGCWC	1 cut(s)	519
BsiHKCI	CYCGRG	1 cut(s)	518
BslFI	GGGAC	1 cut(s)	224
BslI	CCNNNNNNNGG	2 cut(s)	469, 728
BsmFI	GGGAC	1 cut(s)	224
BsmI	GAATGC	1 cut(s)	331
BsnI	GGCC	1 cut(s)	483
BsoBI	CYCGRG	1 cut(s)	518
Bsp1286I	GDGCHC	2 cut(s)	476, 519
Bsp143I	GATC	4 cut(s)	289, 414, 456, 682
Bsp1720I	GCTNAGC	1 cut(s)	62
BspACI	CCGC	2 cut(s)	107, 120
BspANI	GGCC	1 cut(s)	483
BspCNI	CTCAG	4 cut(s)	524, 565, 620, 643
BspFNI	CGCG	1 cut(s)	120
BspHI	TCATGA	1 cut(s)	43
BspLI	GGNNCC	3 cut(s)	309, 475, 684
BspMAI	CTGCAG	1 cut(s)	709
BspPI	GGATC	4 cut(s)	297, 451, 677, 690
BspT107I	GGYRCC	1 cut(s)	307
BsrDI	GCAATG	2 cut(s)	84, 138
BsrI	ACTGG	2 cut(s)	212, 640
BssECI	CCNNGG	1 cut(s)	463
BssMI	GATC	4 cut(s)	289, 414, 456, 682
BssSI	CACGAG	1 cut(s)	408
BssT1I	CCWWGG	1 cut(s)	463
Bst2BI	CACGAG	1 cut(s)	408
Bst4CI	ACNGT	3 cut(s)	177, 202, 396
BstAPI	GCANNNNNTGC	1 cut(s)	665
BstC8I	GCNNGC	1 cut(s)	282
BstDEI	CTNAG	6 cut(s)	62, 303, 511, 573, 607, 651
BstEII	GGTNACC	1 cut(s)	538
BstF5I	GGATG	2 cut(s)	61, 611
BstFNI	CGCG	1 cut(s)	120
BstH2I	RGCGCY	1 cut(s)	69
BstHHI	GCGC	2 cut(s)	68, 120
BstKTI	GATC	4 cut(s)	292, 417, 459, 685
BstMBI	GATC	4 cut(s)	289, 414, 456, 682
BstMWI	GCNNNNNNNGC	5 cut(s)	74, 362, 480, 656, 665
BstPI	GGTNACC	1 cut(s)	538
BstSFI	CTRYAG	3 cut(s)	201, 624, 705
BstUI	CGCG	1 cut(s)	120
BstV1I	GCAGC	3 cut(s)	116, 643, 773
BstX2I	RGATCY	2 cut(s)	289, 682
BstYI	RGATCY	2 cut(s)	289, 682
BsuRI	GGCC	1 cut(s)	483
BtsCI	GGATG	2 cut(s)	61, 611
BtsIMutI	CAGTG	4 cut(s)	354, 424, 519, 722
Cac8I	GCNNGC	1 cut(s)	282
CaiI	CAGNNNCTG	2 cut(s)	704, 724
CciI	TCATGA	1 cut(s)	43
CfoI	GCGC	2 cut(s)	68, 120
Csp6I	GTAC	1 cut(s)	308
CviAII	CATG	4 cut(s)	44, 260, 326, 485
CviQI	GTAC	1 cut(s)	308
DdeI	CTNAG	6 cut(s)	62, 303, 511, 573, 607, 651
DpnI	GATC	4 cut(s)	291, 416, 458, 684
DpnII	GATC	4 cut(s)	289, 414, 456, 682
DraIII	CACNNNGTG	1 cut(s)	514
EaeI	YGGCCR	1 cut(s)	481
Eco130I	CCWWGG	1 cut(s)	463
Eco24I	GRGCYC	1 cut(s)	476
Eco47III	AGCGCT	1 cut(s)	67
Eco57I	CTGAAG	1 cut(s)	746
Eco88I	CYCGRG	1 cut(s)	518
Eco91I	GGTNACC	1 cut(s)	538
EcoO65I	GGTNACC	1 cut(s)	538
EcoRI	GAATTC	1 cut(s)	39
EcoT14I	CCWWGG	1 cut(s)	463
EcoT38I	GRGCYC	1 cut(s)	476
ErhI	CCWWGG	1 cut(s)	463
FaeI	CATG	4 cut(s)	47, 263, 329, 488
FaqI	GGGAC	1 cut(s)	224
FatI	CATG	4 cut(s)	43, 259, 325, 484
FbaI	TGATCA	1 cut(s)	414
FblI	GTMKAC	1 cut(s)	204
Fnu4HI	GCNGC	4 cut(s)	105, 121, 657, 762
FokI	GGATG	2 cut(s)	68, 598
FriOI	GRGCYC	1 cut(s)	476
Fsp4HI	GCNGC	4 cut(s)	105, 121, 657, 762
FspBI	CTAG	1 cut(s)	464
GlaI	GCGC	2 cut(s)	67, 119
GluI	GCNGC	4 cut(s)	105, 121, 657, 762
HaeII	RGCGCY	1 cut(s)	69
HaeIII	GGCC	1 cut(s)	483
HhaI	GCGC	2 cut(s)	68, 120
Hin1II	CATG	4 cut(s)	47, 263, 329, 488
Hin6I	GCGC	2 cut(s)	66, 118
HinP1I	GCGC	2 cut(s)	66, 118
HindIII	AAGCTT	1 cut(s)	278
HinfI	GANTC	2 cut(s)	344, 554
HphI	GGTGA	3 cut(s)	121, 412, 650
Hpy166II	GTNNAC	1 cut(s)	205
Hpy188I	TCNGA	8 cut(s)	13, 100, 321, 370, 427, 478, 687, 793
Hpy188III	TCNNGA	1 cut(s)	44
Hpy8I	GTNNAC	1 cut(s)	205
HpyAV	CCTTC	2 cut(s)	106, 721
HpyCH4III	ACNGT	3 cut(s)	177, 202, 396
HpyCH4IV	ACGT	1 cut(s)	618
HpyCH4V	TGCA	6 cut(s)	131, 284, 331, 659, 668, 707
HpyF10VI	GCNNNNNNNGC	5 cut(s)	74, 362, 480, 656, 665
HpyF3I	CTNAG	6 cut(s)	62, 303, 511, 573, 607, 651
HpySE526I	ACGT	1 cut(s)	618
Hsp92II	CATG	4 cut(s)	47, 263, 329, 488
HspAI	GCGC	2 cut(s)	66, 118
KpnI	GGTACC	1 cut(s)	311
Ksp22I	TGATCA	1 cut(s)	414
Kzo9I	GATC	4 cut(s)	289, 414, 456, 682
LmnI	GCTCC	3 cut(s)	115, 190, 479
Lsp1109I	GCAGC	3 cut(s)	116, 643, 773
LweI	GCATC	3 cut(s)	374, 620, 704
MaeI	CTAG	1 cut(s)	464
MaeII	ACGT	1 cut(s)	618
MaeIII	GTNAC	3 cut(s)	434, 538, 631
MalI	GATC	4 cut(s)	291, 416, 458, 684
MboI	GATC	4 cut(s)	289, 414, 456, 682
MflI	RGATCY	2 cut(s)	289, 682
MhlI	GDGCHC	2 cut(s)	476, 519
MlsI	TGGCCA	1 cut(s)	483
MluCI	AATT	6 cut(s)	39, 271, 446, 579, 711, 785
MluNI	TGGCCA	1 cut(s)	483
MmeI	TCCRAC	1 cut(s)	639
MnlI	CCTC	9 cut(s)	94, 352, 355, 470, 502, 514, 576, 646, 775
Mox20I	TGGCCA	1 cut(s)	483
MscI	TGGCCA	1 cut(s)	483
MseI	TTAA	2 cut(s)	164, 339
Msp20I	TGGCCA	1 cut(s)	483
MspA1I	CMGCKG	1 cut(s)	107
Mva1269I	GAATGC	1 cut(s)	331
MvnI	CGCG	1 cut(s)	120
MwoI	GCNNNNNNNGC	5 cut(s)	74, 362, 480, 656, 665
NdeII	GATC	4 cut(s)	289, 414, 456, 682
NlaIII	CATG	4 cut(s)	47, 263, 329, 488
NlaIV	GGNNCC	3 cut(s)	309, 475, 684
NmuCI	GTSAC	2 cut(s)	434, 631
PaeR7I	CTCGAG	1 cut(s)	518
PagI	TCATGA	1 cut(s)	43
PctI	GAATGC	1 cut(s)	331
PfeI	GAWTC	2 cut(s)	344, 554
PkrI	GCNGC	4 cut(s)	106, 122, 658, 763
PshBI	ATTAAT	1 cut(s)	339
PsiI	TTATAA	1 cut(s)	192
PspEI	GGTNACC	1 cut(s)	538
PspN4I	GGNNCC	3 cut(s)	309, 475, 684
PspXI	VCTCGAGB	1 cut(s)	518
PstI	CTGCAG	1 cut(s)	709
PstNI	CAGNNNCTG	2 cut(s)	704, 724
PsuI	RGATCY	2 cut(s)	289, 682
RsaI	GTAC	1 cut(s)	309
RsaNI	GTAC	1 cut(s)	308
SaqAI	TTAA	2 cut(s)	164, 339
SatI	GCNGC	4 cut(s)	105, 121, 657, 762
Sau3AI	GATC	4 cut(s)	289, 414, 456, 682
SbfI	CCTGCAGG	1 cut(s)	709
SdaI	CCTGCAGG	1 cut(s)	709
SduI	GDGCHC	2 cut(s)	476, 519
SfaNI	GCATC	3 cut(s)	374, 620, 704
SfcI	CTRYAG	3 cut(s)	201, 624, 705
Sfr274I	CTCGAG	1 cut(s)	518
SlaI	CTCGAG	1 cut(s)	518
SmlI	CTYRAG	1 cut(s)	518
SmoI	CTYRAG	1 cut(s)	518
Sse8387I	CCTGCAGG	1 cut(s)	709
Sse9I	AATT	6 cut(s)	39, 271, 446, 579, 711, 785
SsiI	CCGC	2 cut(s)	107, 120
SspMI	CTAG	1 cut(s)	464
StyI	CCWWGG	1 cut(s)	463
TaaI	ACNGT	3 cut(s)	177, 202, 396
TaiI	ACGT	1 cut(s)	621
TaqI	TCGA	3 cut(s)	391, 519, 774
TasI	AATT	6 cut(s)	39, 271, 446, 579, 711, 785
TauI	GCSGC	1 cut(s)	123
TfiI	GAWTC	2 cut(s)	344, 554
Tru1I	TTAA	2 cut(s)	164, 339
Tru9I	TTAA	2 cut(s)	164, 339
TscAI	CASTG	4 cut(s)	354, 424, 519, 729
TseFI	GTSAC	2 cut(s)	434, 631
TseI	GCWGC	3 cut(s)	104, 656, 761
Tsp45I	GTSAC	2 cut(s)	434, 631
TspDTI	ATGAA	2 cut(s)	32, 60
TspRI	CASTG	4 cut(s)	354, 424, 519, 729
VspI	ATTAAT	1 cut(s)	339
XapI	RAATTY	2 cut(s)	39, 446
XhoI	CTCGAG	1 cut(s)	518
XmaJI	CCTAGG	1 cut(s)	463
XmiI	GTMKAC	1 cut(s)	204
XspI	CTAG	1 cut(s)	464

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.