Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr13

Orthogroup ID

OG0006227

Physical Location & Seq

Genomic Coordinates Reverse (-)

3579024 .. 3580979

Gene Structure 1956 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom13g05360.3

Sequence Viewer

CDS Protein Promoter (2k)

Length: 801 bp

ATGGCACTTTCCGGTGTTCGAAAAGATAGAGAGTTGAGGATTCATGAAAGTTTGGATGATCTTAGCACTGATTTGGCAGACTACATTGCTGATATATCAGAGGCATCCGTGAAGGAGCGCGGCGTCTTTGCAATTGCATTATCTGGTGGTTCTCTCATTGGCTTAATGGGAAAACTCTGTGAAGCTCCTTATAACAAGACTGTAGATTGGGCCAAATGGTATATATTTTGGGCAGACGAGCGTGTTGTGGCGAAAAGTCATGTTGATAGCAATTACAAGCTTGCAAAAGATCGCTTTTTGTCTAAGGTACCTATAATTCCCAGTCATGTGCATTCTATTAATGATTCAGTGTCAGCAGAGGAGGCTGCTGATGACTACGGGTTCATCATTCGCCAGCTAGTAAAATCTCGTGTGATCAGCGTGTCTGATATAAGTGACTGTCCCAAGTTTGACCTCATCCTCCTGGGAATGGGTCCTGATGGGCACGTTGCCTCGCTATTTCCCAACCACTCGGTCCTGGAGGAGAAAGATGAATGGGTAACTTTTATAACTGATTCCCCCAAGCCTCCACCCGAGAGAATCACATTCACTCTGCCGGTCATCAACTCAGCATCCAATGTAGCTATAGTCGCAACAGGTGAAAGCAAAGCAGAGGCTGCGCACCTGGCAGTCGACGTCATGGGATCTGACCTCCCTCCAGTGCCTGCTGGAGTTGTCCAGCCACTGAAAGGGAAGCTGGTGTGGTTTTTGGACGAGGCAGCTGCCTCAAAACTTGATGCTGGTACTCAATTTTCCGCATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006081 GO:0006098 GO:0006139 GO:0006725 GO:0006732 GO:0006733 GO:0006739 GO:0006753 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0009051 GO:0009117 GO:0009987 GO:0016787 GO:0016788 GO:0017057 GO:0019362 GO:0019637 GO:0019682 GO:0019693 GO:0034641 GO:0044237 GO:0044238 GO:0044281 GO:0044424 GO:0044444 GO:0044464 GO:0046483 GO:0046496 GO:0051156 GO:0051186 GO:0052689 GO:0055086 GO:0071704 GO:0072524 GO:1901135 GO:1901360 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko00030 ko01100 ko01110 ko01120 ko01130 ko01200 map00030 map01100 map01110 map01120 map01130 map01200

Pfam Domains

Protein Families

Glucosamine_iso

Protein Analysis

267

Amino Acids

28.86

Weight (kDa)

5.0

Isoelectric Point (pI)

24.09

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006227)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G13700 AT1G13700 AT1G13700
fragaria_vesca	FvH4_4g29730 FvH4_4g29730 FvH4_4g29730 FvH4_4g29730
malus_domestica	MD13G1060200.v1.1 MD16G1059500.v1.1
prunus_persica	Prupe.1G289200_v2.0.a1 Prupe.1G289200_v2.0.a1
pyrus_communis	pycom13g05360 pycom16g05190
rosa_chinensis	RchiOBHm_Chr4g0437981
rosa_laevigata	RLG00000006396
rosa_multiflora	Rmu_sc0007538.1_g000007
rosa_roxburghii	Rroxscaffold_5G00379140
rosa_rugosa	Rorug04G0306000 Rorug04G0306100 Rorug04G0306100 Rorug04G0306100
rosa_samantha	Rh4AG357700 Rh4BG368600 Rh4CG382700 Rh4DG363500
rosa_wichuraiana	Rw0G011500 Rw0G016170

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	2 cut(s)	192, 548
AatII	GACGTC	1 cut(s)	678
Acc16I	TGCGCA	1 cut(s)	660
Acc65I	GGTACC	1 cut(s)	307
AccB1I	GGYRCC	1 cut(s)	307
AccI	GTMKAC	1 cut(s)	672
AccII	CGCG	1 cut(s)	120
AciI	CCGC	2 cut(s)	120, 795
AclWI	GGATC	1 cut(s)	691
AcyI	GRCGYC	2 cut(s)	123, 675
AfaI	GTAC	2 cut(s)	309, 784
AfiI	CCNNNNNNNGG	2 cut(s)	469, 728
AjnI	CCWGG	3 cut(s)	462, 516, 663
AluBI	AGCT	6 cut(s)	185, 280, 397, 623, 736, 761
AluI	AGCT	6 cut(s)	185, 280, 397, 623, 736, 761
AlwI	GGATC	1 cut(s)	691
AlwNI	CAGNNNCTG	3 cut(s)	656, 704, 724
Ama87I	CYCGRG	1 cut(s)	572
AoxI	GGCC	1 cut(s)	210
ApeKI	GCWGC	4 cut(s)	365, 656, 758, 761
AseI	ATTAAT	1 cut(s)	339
Asp718I	GGTACC	1 cut(s)	307
AspLEI	GCGC	2 cut(s)	120, 661
AspS9I	GGNCC	3 cut(s)	210, 473, 514
AsuHPI	GGTGA	1 cut(s)	650
AsuII	TTCGAA	1 cut(s)	19
AvaI	CYCGRG	1 cut(s)	572
AvaII	GGWCC	2 cut(s)	473, 514
BaeGI	GKGCMC	1 cut(s)	486
BanI	GGYRCC	1 cut(s)	307
BauI	CACGAG	1 cut(s)	408
BbvI	GCAGC	4 cut(s)	352, 643, 748, 770
BccI	CCATC	1 cut(s)	473
BcgI	CGANNNNNNTGC	2 cut(s)	743, 777
BciT130I	CCWGG	3 cut(s)	464, 518, 665
BclI	TGATCA	1 cut(s)	414
BfaI	CTAG	1 cut(s)	398
BfmI	CTRYAG	2 cut(s)	201, 624
BisI	GCNGC	5 cut(s)	121, 366, 657, 759, 762
BlsI	GCNGC	5 cut(s)	122, 367, 658, 760, 763
Bme1390I	CCNGG	3 cut(s)	464, 518, 665
Bme18I	GGWCC	2 cut(s)	473, 514
BmeT110I	CYCGRG	1 cut(s)	572
BmgT120I	GGNCC	3 cut(s)	210, 473, 514
BmiI	GGNNCC	2 cut(s)	309, 474
BmrFI	CCNGG	3 cut(s)	464, 518, 665
BmrI	ACTGGG	1 cut(s)	315
BmsI	GCATC	3 cut(s)	113, 620, 766
BmuI	ACTGGG	1 cut(s)	315
BpmI	CTGGAG	3 cut(s)	539, 681, 729
Bpu14I	TTCGAA	1 cut(s)	19
BsaHI	GRCGYC	2 cut(s)	123, 675
BsaJI	CCNNGG	1 cut(s)	463
BsaWI	WCCGGW	1 cut(s)	11
Bsc4I	CCNNNNNNNGG	2 cut(s)	469, 728
Bse118I	RCCGGY	1 cut(s)	595
Bse1I	ACTGG	2 cut(s)	321, 698
Bse3DI	GCAATG	1 cut(s)	84
BseBI	CCWGG	3 cut(s)	464, 518, 665
BseDI	CCNNGG	1 cut(s)	463
BseGI	GGATG	4 cut(s)	61, 104, 456, 611
BseLI	CCNNNNNNNGG	2 cut(s)	469, 728
BseMI	GCAATG	1 cut(s)	84
BseMII	CTCAG	1 cut(s)	621
BseNI	ACTGG	2 cut(s)	321, 698
BseRI	GAGGAG	2 cut(s)	374, 536
BseSI	GKGCMC	1 cut(s)	486
BseXI	GCAGC	4 cut(s)	352, 643, 748, 770
Bsh1236I	CGCG	1 cut(s)	120
BshFI	GGCC	1 cut(s)	212
BshNI	GGYRCC	1 cut(s)	307
BsiHKCI	CYCGRG	1 cut(s)	572
BsiSI	CCGG	2 cut(s)	12, 596
BslFI	GGGAC	1 cut(s)	426
BslI	CCNNNNNNNGG	2 cut(s)	469, 728
BsmFI	GGGAC	1 cut(s)	426
BsmI	GAATGC	1 cut(s)	331
BsnI	GGCC	1 cut(s)	212
BsoBI	CYCGRG	1 cut(s)	572
Bsp119I	TTCGAA	1 cut(s)	19
Bsp1286I	GDGCHC	1 cut(s)	486
Bsp143I	GATC	4 cut(s)	58, 289, 414, 683
BspACI	CCGC	2 cut(s)	120, 795
BspANI	GGCC	1 cut(s)	212
BspCNI	CTCAG	1 cut(s)	620
BspFNI	CGCG	1 cut(s)	120
BspHI	TCATGA	1 cut(s)	43
BspLI	GGNNCC	2 cut(s)	309, 474
BspPI	GGATC	1 cut(s)	691
BspT104I	TTCGAA	1 cut(s)	19
BspT107I	GGYRCC	1 cut(s)	307
BsrDI	GCAATG	1 cut(s)	84
BsrFI	RCCGGY	1 cut(s)	595
BsrI	ACTGG	2 cut(s)	321, 698
BssAI	RCCGGY	1 cut(s)	595
BssECI	CCNNGG	1 cut(s)	463
BssMI	GATC	4 cut(s)	58, 289, 414, 683
BssNI	GRCGYC	2 cut(s)	123, 675
BssSI	CACGAG	1 cut(s)	408
Bst2BI	CACGAG	1 cut(s)	408
Bst2UI	CCWGG	3 cut(s)	464, 518, 665
Bst4CI	ACNGT	2 cut(s)	202, 440
BstACI	GRCGYC	2 cut(s)	123, 675
BstAPI	GCANNNNNTGC	1 cut(s)	656
BstBI	TTCGAA	1 cut(s)	19
BstC8I	GCNNGC	3 cut(s)	282, 395, 705
BstDEI	CTNAG	3 cut(s)	62, 303, 607
BstF5I	GGATG	4 cut(s)	61, 104, 456, 611
BstFNI	CGCG	1 cut(s)	120
BstHHI	GCGC	2 cut(s)	120, 661
BstKTI	GATC	4 cut(s)	61, 292, 417, 686
BstMBI	GATC	4 cut(s)	58, 289, 414, 683
BstMWI	GCNNNNNNNGC	4 cut(s)	362, 629, 656, 665
BstNI	CCWGG	3 cut(s)	464, 518, 665
BstSCI	CCNGG	3 cut(s)	462, 516, 663
BstSFI	CTRYAG	2 cut(s)	201, 624
BstSLI	GKGCMC	1 cut(s)	486
BstUI	CGCG	1 cut(s)	120
BstV1I	GCAGC	4 cut(s)	352, 643, 748, 770
BstX2I	RGATCY	1 cut(s)	683
BstYI	RGATCY	1 cut(s)	683
BsuRI	GGCC	1 cut(s)	212
BtsCI	GGATG	4 cut(s)	61, 104, 456, 611
BtsIMutI	CAGTG	4 cut(s)	66, 354, 705, 722
Cac8I	GCNNGC	3 cut(s)	282, 395, 705
CaiI	CAGNNNCTG	3 cut(s)	656, 704, 724
CciI	TCATGA	1 cut(s)	43
CfoI	GCGC	2 cut(s)	120, 661
Cfr10I	RCCGGY	1 cut(s)	595
Cfr13I	GGNCC	3 cut(s)	210, 473, 514
CseI	GACGC	1 cut(s)	112
Csp6I	GTAC	2 cut(s)	308, 783
CviAII	CATG	4 cut(s)	44, 260, 326, 679
CviQI	GTAC	2 cut(s)	308, 783
DdeI	CTNAG	3 cut(s)	62, 303, 607
DpnI	GATC	4 cut(s)	60, 291, 416, 685
DpnII	GATC	4 cut(s)	58, 289, 414, 683
Eco47I	GGWCC	2 cut(s)	473, 514
Eco88I	CYCGRG	1 cut(s)	572
EcoO109I	RGGNCCY	1 cut(s)	473
EcoRII	CCWGG	3 cut(s)	462, 516, 663
FaeI	CATG	4 cut(s)	47, 263, 329, 682
FaqI	GGGAC	1 cut(s)	426
FatI	CATG	4 cut(s)	43, 259, 325, 678
FbaI	TGATCA	1 cut(s)	414
FblI	GTMKAC	1 cut(s)	672
Fnu4HI	GCNGC	5 cut(s)	121, 366, 657, 759, 762
FokI	GGATG	4 cut(s)	68, 91, 443, 598
Fsp4HI	GCNGC	5 cut(s)	121, 366, 657, 759, 762
FspBI	CTAG	1 cut(s)	398
FspI	TGCGCA	1 cut(s)	660
GlaI	GCGC	2 cut(s)	119, 660
GluI	GCNGC	5 cut(s)	121, 366, 657, 759, 762
GsuI	CTGGAG	3 cut(s)	539, 681, 729
HaeIII	GGCC	1 cut(s)	212
HapII	CCGG	2 cut(s)	12, 596
HgaI	GACGC	1 cut(s)	112
HhaI	GCGC	2 cut(s)	120, 661
Hin1I	GRCGYC	2 cut(s)	123, 675
Hin1II	CATG	4 cut(s)	47, 263, 329, 682
Hin6I	GCGC	2 cut(s)	118, 659
HinP1I	GCGC	2 cut(s)	118, 659
HincII	GTYRAC	1 cut(s)	673
HindII	GTYRAC	1 cut(s)	673
HindIII	AAGCTT	1 cut(s)	278
HinfI	GANTC	4 cut(s)	40, 344, 554, 579
HpaII	CCGG	2 cut(s)	12, 596
HphI	GGTGA	1 cut(s)	650
Hpy166II	GTNNAC	1 cut(s)	673
Hpy188I	TCNGA	3 cut(s)	100, 427, 688
Hpy188III	TCNNGA	2 cut(s)	44, 476
Hpy8I	GTNNAC	1 cut(s)	673
Hpy99I	CGWCG	1 cut(s)	677
HpyAV	CCTTC	1 cut(s)	106
HpyCH4III	ACNGT	2 cut(s)	202, 440
HpyCH4IV	ACGT	2 cut(s)	486, 675
HpyCH4V	TGCA	4 cut(s)	131, 137, 284, 331
HpyF10VI	GCNNNNNNNGC	4 cut(s)	362, 629, 656, 665
HpyF3I	CTNAG	3 cut(s)	62, 303, 607
HpySE526I	ACGT	2 cut(s)	486, 675
Hsp92I	GRCGYC	2 cut(s)	123, 675
Hsp92II	CATG	4 cut(s)	47, 263, 329, 682
HspAI	GCGC	2 cut(s)	118, 659
KpnI	GGTACC	1 cut(s)	311
Ksp22I	TGATCA	1 cut(s)	414
Kzo9I	GATC	4 cut(s)	58, 289, 414, 683
LmnI	GCTCC	2 cut(s)	115, 190
Lsp1109I	GCAGC	4 cut(s)	352, 643, 748, 770
LweI	GCATC	3 cut(s)	113, 620, 766
MaeI	CTAG	1 cut(s)	398
MaeII	ACGT	2 cut(s)	486, 675
MaeIII	GTNAC	2 cut(s)	434, 538
MalI	GATC	4 cut(s)	60, 291, 416, 685
MboI	GATC	4 cut(s)	58, 289, 414, 683
MfeI	CAATTG	1 cut(s)	132
MflI	RGATCY	1 cut(s)	683
MhlI	GDGCHC	1 cut(s)	486
MluCI	AATT	4 cut(s)	132, 271, 315, 788
MseI	TTAA	2 cut(s)	164, 339
MspA1I	CMGCKG	1 cut(s)	761
MspI	CCGG	2 cut(s)	12, 596
MspR9I	CCNGG	3 cut(s)	464, 518, 665
MunI	CAATTG	1 cut(s)	132
Mva1269I	GAATGC	1 cut(s)	331
MvaI	CCWGG	3 cut(s)	464, 518, 665
MvnI	CGCG	1 cut(s)	120
MwoI	GCNNNNNNNGC	4 cut(s)	362, 629, 656, 665
NdeII	GATC	4 cut(s)	58, 289, 414, 683
NlaIII	CATG	4 cut(s)	47, 263, 329, 682
NlaIV	GGNNCC	2 cut(s)	309, 474
NmuCI	GTSAC	1 cut(s)	434
NsbI	TGCGCA	1 cut(s)	660
NspV	TTCGAA	1 cut(s)	19
PagI	TCATGA	1 cut(s)	43
PctI	GAATGC	1 cut(s)	331
PfeI	GAWTC	4 cut(s)	40, 344, 554, 579
PfoI	TCCNGGA	1 cut(s)	516
PkrI	GCNGC	5 cut(s)	122, 367, 658, 760, 763
PpuMI	RGGWCCY	1 cut(s)	473
PshBI	ATTAAT	1 cut(s)	339
PsiI	TTATAA	2 cut(s)	192, 548
Psp5II	RGGWCCY	1 cut(s)	473
Psp6I	CCWGG	3 cut(s)	462, 516, 663
PspGI	CCWGG	3 cut(s)	462, 516, 663
PspN4I	GGNNCC	2 cut(s)	309, 474
PspPI	GGNCC	3 cut(s)	210, 473, 514
PspPPI	RGGWCCY	1 cut(s)	473
PstNI	CAGNNNCTG	3 cut(s)	656, 704, 724
PsuI	RGATCY	1 cut(s)	683
PvuII	CAGCTG	1 cut(s)	761
RsaI	GTAC	2 cut(s)	309, 784
RsaNI	GTAC	2 cut(s)	308, 783
SalI	GTCGAC	1 cut(s)	671
SaqAI	TTAA	2 cut(s)	164, 339
SatI	GCNGC	5 cut(s)	121, 366, 657, 759, 762
Sau3AI	GATC	4 cut(s)	58, 289, 414, 683
Sau96I	GGNCC	3 cut(s)	210, 473, 514
ScrFI	CCNGG	3 cut(s)	464, 518, 665
SduI	GDGCHC	1 cut(s)	486
SfaNI	GCATC	3 cut(s)	113, 620, 766
SfcI	CTRYAG	2 cut(s)	201, 624
SfuI	TTCGAA	1 cut(s)	19
SinI	GGWCC	2 cut(s)	473, 514
Sse9I	AATT	4 cut(s)	132, 271, 315, 788
SsiI	CCGC	2 cut(s)	120, 795
SspMI	CTAG	1 cut(s)	398
StyD4I	CCNGG	3 cut(s)	462, 516, 663
TaaI	ACNGT	2 cut(s)	202, 440
TaiI	ACGT	2 cut(s)	489, 678
TaqI	TCGA	2 cut(s)	19, 672
TaqII	GACCGA	1 cut(s)	502
TasI	AATT	4 cut(s)	132, 271, 315, 788
TauI	GCSGC	1 cut(s)	123
TfiI	GAWTC	4 cut(s)	40, 344, 554, 579
Tru1I	TTAA	2 cut(s)	164, 339
Tru9I	TTAA	2 cut(s)	164, 339
TscAI	CASTG	4 cut(s)	73, 354, 705, 729
TseFI	GTSAC	1 cut(s)	434
TseI	GCWGC	4 cut(s)	365, 656, 758, 761
Tsp45I	GTSAC	1 cut(s)	434
TspDTI	ATGAA	4 cut(s)	32, 60, 373, 546
TspGWI	ACGGA	1 cut(s)	97
TspRI	CASTG	4 cut(s)	73, 354, 705, 729
VpaK11BI	GGWCC	2 cut(s)	473, 514
VspI	ATTAAT	1 cut(s)	339
XmiI	GTMKAC	1 cut(s)	672
XspI	CTAG	1 cut(s)	398
ZraI	GACGTC	1 cut(s)	676

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.