Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr16

Orthogroup ID

OG0006227

Physical Location & Seq

Genomic Coordinates Reverse (-)

3375830 .. 3378888

Gene Structure 3059 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom16g05190.3

Sequence Viewer

CDS Protein Promoter (2k)

Length: 945 bp

ATGAAATACTATAAATATATTATATATAAACAAATTGGTATAGATTCCCATCTTCCACCTTCGTCAGTTTCTTGCTTCTCTGCCACCTCTCCCTCCTCCTTCCTTCTTCTTCCTCCCCCTCTTGGTGTTGAACTTGTTGGAAGCATGGCAATTTCCGGGGTTCGAAAAGATAGAGAGTTGAGGATTCATGAAAGTTTGGATGAGCTGAGCACTGATTTGGCAGACTACATTGCTGAGCTATCAGAGGCATCCGTGAAGGAGCGCGGCGTCTTTGCAATTGCATTATCTGGTGGTTCTCTCATTGGCTTAATGGGGAAACTGTGTGAAGCTCCTTATAACAAGACTGTAGATTGGGCCAAATGGTATATATTTTGGGCAGACGAGCGTGTTGTGGCGAAAAGTCATGTCGATAGCAACTACAAGCTTGCGAAAGATCGCCTTTTGTCCAAGGTACCTATAATTCCCAGTCATGTGCATTCTATTAATGATTCAGTGTCAGCAGAGGAGGCTGCTGATGACTATGAGTTTGTCATTCGCCAGTTAGTGAAATCTCGTGTGATCAGCGTGTCTGATATAAGTGACTGCCCCAAGTTTGACCTAATCCTCCTGGGAATGGGTCCTGATGGGCACGTCGCCTCACTATTCCCTAACCACTCGGTGCTGGAGAAGAAAGATGAATGGGTAACTTTTATAACTGACTCCCCCAAACCTCCACCCGAGAGAATCACGTTCACTCTGCCAGTCATCAACTCGGCATCCAATGTGGCGATAGTCGCAACAGGTGACAGCAAAGCAGAGGCTGCGCACATGGCAGTCGACGACATGGGATCTGACCTCCCTCCAGTGCCGGCTGCAATTGTCCAGCCACTGAAAGGGAAGTTGGTGTGGTTTTTGGACAAGGCAGCTGCCTCAAAACTTGATGACGGTACTCAAGTCTCCGCATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006081 GO:0006098 GO:0006139 GO:0006725 GO:0006732 GO:0006733 GO:0006739 GO:0006753 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0009051 GO:0009117 GO:0009987 GO:0016787 GO:0016788 GO:0017057 GO:0019362 GO:0019637 GO:0019682 GO:0019693 GO:0034641 GO:0044237 GO:0044238 GO:0044281 GO:0044424 GO:0044444 GO:0044464 GO:0046483 GO:0046496 GO:0051156 GO:0051186 GO:0052689 GO:0055086 GO:0071704 GO:0072524 GO:1901135 GO:1901360 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko00030 ko01100 ko01110 ko01120 ko01130 ko01200 map00030 map01100 map01110 map01120 map01130 map01200

Pfam Domains

Protein Families

Glucosamine_iso

Protein Analysis

315

Amino Acids

34.17

Weight (kDa)

5.29

Isoelectric Point (pI)

30.47

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006227)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G13700 AT1G13700 AT1G13700
fragaria_vesca	FvH4_4g29730 FvH4_4g29730 FvH4_4g29730 FvH4_4g29730
malus_domestica	MD13G1060200.v1.1 MD16G1059500.v1.1
prunus_persica	Prupe.1G289200_v2.0.a1 Prupe.1G289200_v2.0.a1
pyrus_communis	pycom13g05360 pycom16g05190
rosa_chinensis	RchiOBHm_Chr4g0437981
rosa_laevigata	RLG00000006396
rosa_multiflora	Rmu_sc0007538.1_g000007
rosa_roxburghii	Rroxscaffold_5G00379140
rosa_rugosa	Rorug04G0306000 Rorug04G0306100 Rorug04G0306100 Rorug04G0306100
rosa_samantha	Rh4AG357700 Rh4BG368600 Rh4CG382700 Rh4DG363500
rosa_wichuraiana	Rw0G011500 Rw0G016170

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	2 cut(s)	336, 692
Acc16I	TGCGCA	1 cut(s)	804
Acc65I	GGTACC	1 cut(s)	451
AccB1I	GGYRCC	1 cut(s)	451
AccI	GTMKAC	1 cut(s)	816
AccII	CGCG	1 cut(s)	264
AciI	CCGC	2 cut(s)	264, 939
AclWI	GGATC	1 cut(s)	835
AcyI	GRCGYC	1 cut(s)	267
AdeI	CACNNNGTG	1 cut(s)	658
AfaI	GTAC	2 cut(s)	453, 928
AfiI	CCNNNNNNNGG	3 cut(s)	122, 613, 872
AgsI	TTSAA	1 cut(s)	131
AjiI	CACGTC	1 cut(s)	631
AjnI	CCWGG	1 cut(s)	606
AjuI	GAANNNNNNNTTGG	2 cut(s)	863, 895
AluBI	AGCT	5 cut(s)	205, 238, 329, 424, 905
AluI	AGCT	5 cut(s)	205, 238, 329, 424, 905
Alw21I	GWGCWC	1 cut(s)	212
Alw26I	GTCTC	1 cut(s)	940
AlwI	GGATC	1 cut(s)	835
AlwNI	CAGNNNCTG	2 cut(s)	800, 868
Ama87I	CYCGRG	1 cut(s)	716
AoxI	GGCC	1 cut(s)	354
ApeKI	GCWGC	5 cut(s)	509, 800, 851, 902, 905
ArsI	GACNNNNNNTTYG	2 cut(s)	509, 541
AseI	ATTAAT	1 cut(s)	483
Asp718I	GGTACC	1 cut(s)	451
AspLEI	GCGC	2 cut(s)	264, 805
AspS9I	GGNCC	2 cut(s)	354, 617
AsuC2I	CCSGG	1 cut(s)	157
AsuHPI	GGTGA	1 cut(s)	794
AsuII	TTCGAA	1 cut(s)	163
AvaI	CYCGRG	1 cut(s)	716
AvaII	GGWCC	1 cut(s)	617
BaeGI	GKGCMC	1 cut(s)	630
BaeI	ACNNNNGTAYC	1 cut(s)	918
BanI	GGYRCC	1 cut(s)	451
BauI	CACGAG	1 cut(s)	552
Bbv12I	GWGCWC	1 cut(s)	212
BbvI	GCAGC	5 cut(s)	496, 787, 838, 892, 914
BccI	CCATC	2 cut(s)	57, 617
BciT130I	CCWGG	1 cut(s)	608
BclI	TGATCA	1 cut(s)	558
BcnI	CCSGG	1 cut(s)	157
BcoDI	GTCTC	1 cut(s)	940
BfmI	CTRYAG	1 cut(s)	345
BisI	GCNGC	6 cut(s)	265, 510, 801, 852, 903, 906
BlpI	GCTNAGC	2 cut(s)	206, 234
BlsI	GCNGC	6 cut(s)	266, 511, 802, 853, 904, 907
Bme1390I	CCNGG	2 cut(s)	157, 608
Bme18I	GGWCC	1 cut(s)	617
BmeT110I	CYCGRG	1 cut(s)	716
BmgBI	CACGTC	1 cut(s)	631
BmgT120I	GGNCC	2 cut(s)	354, 617
BmiI	GGNNCC	2 cut(s)	453, 618
BmrFI	CCNGG	2 cut(s)	157, 608
BmrI	ACTGGG	1 cut(s)	459
BmsI	GCATC	2 cut(s)	257, 764
BmuI	ACTGGG	1 cut(s)	459
BpmI	CTGGAG	2 cut(s)	683, 825
Bpu1102I	GCTNAGC	2 cut(s)	206, 234
Bpu14I	TTCGAA	1 cut(s)	163
BpuEI	CTTGAG	1 cut(s)	915
BpuMI	CCSGG	1 cut(s)	157
BsaBI	GATNNNNATC	1 cut(s)	48
BsaHI	GRCGYC	1 cut(s)	267
BsaJI	CCNNGG	3 cut(s)	156, 447, 607
Bsc4I	CCNNNNNNNGG	3 cut(s)	122, 613, 872
Bse118I	RCCGGY	1 cut(s)	847
Bse1I	ACTGG	4 cut(s)	465, 538, 740, 842
Bse3DI	GCAATG	1 cut(s)	228
Bse8I	GATNNNNATC	1 cut(s)	48
BseBI	CCWGG	1 cut(s)	608
BseDI	CCNNGG	3 cut(s)	156, 447, 607
BseGI	GGATG	3 cut(s)	205, 248, 755
BseJI	GATNNNNATC	1 cut(s)	48
BseLI	CCNNNNNNNGG	3 cut(s)	122, 613, 872
BseMI	GCAATG	1 cut(s)	228
BseMII	CTCAG	2 cut(s)	197, 225
BseNI	ACTGG	4 cut(s)	465, 538, 740, 842
BseRI	GAGGAG	2 cut(s)	85, 518
BseSI	GKGCMC	1 cut(s)	630
BseXI	GCAGC	5 cut(s)	496, 787, 838, 892, 914
Bsh1236I	CGCG	1 cut(s)	264
BshFI	GGCC	1 cut(s)	356
BshNI	GGYRCC	1 cut(s)	451
BsiHKAI	GWGCWC	1 cut(s)	212
BsiHKCI	CYCGRG	1 cut(s)	716
BsiSI	CCGG	2 cut(s)	156, 848
BslI	CCNNNNNNNGG	3 cut(s)	122, 613, 872
BsmAI	GTCTC	1 cut(s)	940
BsmI	GAATGC	1 cut(s)	475
BsnI	GGCC	1 cut(s)	356
BsoBI	CYCGRG	1 cut(s)	716
Bsp119I	TTCGAA	1 cut(s)	163
Bsp1286I	GDGCHC	2 cut(s)	212, 630
Bsp143I	GATC	3 cut(s)	433, 558, 827
Bsp1720I	GCTNAGC	2 cut(s)	206, 234
BspACI	CCGC	2 cut(s)	264, 939
BspANI	GGCC	1 cut(s)	356
BspCNI	CTCAG	2 cut(s)	198, 226
BspFNI	CGCG	1 cut(s)	264
BspHI	TCATGA	1 cut(s)	187
BspLI	GGNNCC	2 cut(s)	453, 618
BspPI	GGATC	1 cut(s)	835
BspT104I	TTCGAA	1 cut(s)	163
BspT107I	GGYRCC	1 cut(s)	451
BsrDI	GCAATG	1 cut(s)	228
BsrFI	RCCGGY	1 cut(s)	847
BsrI	ACTGG	4 cut(s)	465, 538, 740, 842
BssAI	RCCGGY	1 cut(s)	847
BssECI	CCNNGG	3 cut(s)	156, 447, 607
BssMI	GATC	3 cut(s)	433, 558, 827
BssNI	GRCGYC	1 cut(s)	267
BssSI	CACGAG	1 cut(s)	552
BssT1I	CCWWGG	1 cut(s)	447
Bst2BI	CACGAG	1 cut(s)	552
Bst2UI	CCWGG	1 cut(s)	608
Bst4CI	ACNGT	3 cut(s)	321, 346, 926
BstACI	GRCGYC	1 cut(s)	267
BstAPI	GCANNNNNTGC	1 cut(s)	800
BstBI	TTCGAA	1 cut(s)	163
BstC8I	GCNNGC	2 cut(s)	426, 849
BstDEI	CTNAG	2 cut(s)	206, 234
BstF5I	GGATG	3 cut(s)	205, 248, 755
BstFNI	CGCG	1 cut(s)	264
BstHHI	GCGC	2 cut(s)	264, 805
BstKTI	GATC	3 cut(s)	436, 561, 830
BstMAI	GTCTC	1 cut(s)	940
BstMBI	GATC	3 cut(s)	433, 558, 827
BstMWI	GCNNNNNNNGC	4 cut(s)	506, 773, 800, 809
BstNI	CCWGG	1 cut(s)	608
BstSCI	CCNGG	2 cut(s)	155, 606
BstSFI	CTRYAG	1 cut(s)	345
BstSLI	GKGCMC	1 cut(s)	630
BstUI	CGCG	1 cut(s)	264
BstV1I	GCAGC	5 cut(s)	496, 787, 838, 892, 914
BstX2I	RGATCY	1 cut(s)	827
BstYI	RGATCY	1 cut(s)	827
BsuRI	GGCC	1 cut(s)	356
BtrI	CACGTC	1 cut(s)	631
BtsCI	GGATG	3 cut(s)	205, 248, 755
BtsIMutI	CAGTG	4 cut(s)	210, 498, 849, 866
Cac8I	GCNNGC	2 cut(s)	426, 849
CaiI	CAGNNNCTG	2 cut(s)	800, 868
CciI	TCATGA	1 cut(s)	187
CfoI	GCGC	2 cut(s)	264, 805
Cfr10I	RCCGGY	1 cut(s)	847
Cfr13I	GGNCC	2 cut(s)	354, 617
CseI	GACGC	1 cut(s)	256
Csp6I	GTAC	2 cut(s)	452, 927
CviAII	CATG	6 cut(s)	145, 188, 404, 470, 808, 823
CviQI	GTAC	2 cut(s)	452, 927
DdeI	CTNAG	2 cut(s)	206, 234
DpnI	GATC	3 cut(s)	435, 560, 829
DpnII	GATC	3 cut(s)	433, 558, 827
DraIII	CACNNNGTG	1 cut(s)	658
Eco130I	CCWWGG	1 cut(s)	447
Eco47I	GGWCC	1 cut(s)	617
Eco88I	CYCGRG	1 cut(s)	716
EcoO109I	RGGNCCY	1 cut(s)	617
EcoRII	CCWGG	1 cut(s)	606
EcoT14I	CCWWGG	1 cut(s)	447
ErhI	CCWWGG	1 cut(s)	447
FaeI	CATG	6 cut(s)	148, 191, 407, 473, 811, 826
FalI	AAGNNNNNCTT	2 cut(s)	423, 455
FatI	CATG	6 cut(s)	144, 187, 403, 469, 807, 822
FbaI	TGATCA	1 cut(s)	558
FblI	GTMKAC	1 cut(s)	816
Fnu4HI	GCNGC	6 cut(s)	265, 510, 801, 852, 903, 906
FokI	GGATG	3 cut(s)	212, 235, 742
Fsp4HI	GCNGC	6 cut(s)	265, 510, 801, 852, 903, 906
FspI	TGCGCA	1 cut(s)	804
GlaI	GCGC	2 cut(s)	263, 804
GluI	GCNGC	6 cut(s)	265, 510, 801, 852, 903, 906
GsuI	CTGGAG	2 cut(s)	683, 825
HaeIII	GGCC	1 cut(s)	356
HapII	CCGG	2 cut(s)	156, 848
HgaI	GACGC	1 cut(s)	256
HhaI	GCGC	2 cut(s)	264, 805
Hin1I	GRCGYC	1 cut(s)	267
Hin1II	CATG	6 cut(s)	148, 191, 407, 473, 811, 826
Hin6I	GCGC	2 cut(s)	262, 803
HinP1I	GCGC	2 cut(s)	262, 803
HincII	GTYRAC	1 cut(s)	817
HindII	GTYRAC	1 cut(s)	817
HindIII	AAGCTT	1 cut(s)	422
HinfI	GANTC	5 cut(s)	44, 184, 488, 698, 723
HpaII	CCGG	2 cut(s)	156, 848
HphI	GGTGA	1 cut(s)	794
Hpy166II	GTNNAC	2 cut(s)	732, 817
Hpy188I	TCNGA	3 cut(s)	244, 571, 832
Hpy188III	TCNNGA	2 cut(s)	188, 620
Hpy8I	GTNNAC	2 cut(s)	732, 817
Hpy99I	CGWCG	2 cut(s)	635, 821
HpyAV	CCTTC	4 cut(s)	69, 109, 113, 250
HpyCH4III	ACNGT	3 cut(s)	321, 346, 926
HpyCH4IV	ACGT	2 cut(s)	630, 728
HpyCH4V	TGCA	4 cut(s)	275, 281, 475, 854
HpyF10VI	GCNNNNNNNGC	4 cut(s)	506, 773, 800, 809
HpyF3I	CTNAG	2 cut(s)	206, 234
HpySE526I	ACGT	2 cut(s)	630, 728
Hsp92I	GRCGYC	1 cut(s)	267
Hsp92II	CATG	6 cut(s)	148, 191, 407, 473, 811, 826
HspAI	GCGC	2 cut(s)	262, 803
KpnI	GGTACC	1 cut(s)	455
KroI	GCCGGC	1 cut(s)	847
KroNI	GCCGGC	1 cut(s)	849
Ksp22I	TGATCA	1 cut(s)	558
Kzo9I	GATC	3 cut(s)	433, 558, 827
LmnI	GCTCC	2 cut(s)	259, 334
Lsp1109I	GCAGC	5 cut(s)	496, 787, 838, 892, 914
LweI	GCATC	2 cut(s)	257, 764
MaeII	ACGT	2 cut(s)	630, 728
MaeIII	GTNAC	3 cut(s)	578, 682, 782
MalI	GATC	3 cut(s)	435, 560, 829
MboI	GATC	3 cut(s)	433, 558, 827
MboII	GAAGA	4 cut(s)	44, 98, 101, 679
MfeI	CAATTG	2 cut(s)	276, 855
MflI	RGATCY	1 cut(s)	827
MhlI	GDGCHC	2 cut(s)	212, 630
MluCI	AATT	5 cut(s)	33, 150, 276, 459, 855
MlyI	GAGTC	1 cut(s)	692
MmeI	TCCRAC	1 cut(s)	118
MroNI	GCCGGC	1 cut(s)	847
MseI	TTAA	2 cut(s)	308, 483
MspA1I	CMGCKG	1 cut(s)	905
MspI	CCGG	2 cut(s)	156, 848
MspR9I	CCNGG	2 cut(s)	157, 608
MunI	CAATTG	2 cut(s)	276, 855
Mva1269I	GAATGC	1 cut(s)	475
MvaI	CCWGG	1 cut(s)	608
MvnI	CGCG	1 cut(s)	264
MwoI	GCNNNNNNNGC	4 cut(s)	506, 773, 800, 809
NaeI	GCCGGC	1 cut(s)	849
NciI	CCSGG	1 cut(s)	157
NdeII	GATC	3 cut(s)	433, 558, 827
NgoMIV	GCCGGC	1 cut(s)	847
NlaIII	CATG	6 cut(s)	148, 191, 407, 473, 811, 826
NlaIV	GGNNCC	2 cut(s)	453, 618
NmeAIII	GCCGAG	1 cut(s)	731
NmuCI	GTSAC	2 cut(s)	578, 782
NsbI	TGCGCA	1 cut(s)	804
NspV	TTCGAA	1 cut(s)	163
PagI	TCATGA	1 cut(s)	187
PctI	GAATGC	1 cut(s)	475
PdiI	GCCGGC	1 cut(s)	849
PfeI	GAWTC	4 cut(s)	44, 184, 488, 723
PkrI	GCNGC	6 cut(s)	266, 511, 802, 853, 904, 907
PleI	GAGTC	1 cut(s)	692
PpsI	GAGTC	1 cut(s)	692
PpuMI	RGGWCCY	1 cut(s)	617
PshBI	ATTAAT	1 cut(s)	483
PsiI	TTATAA	2 cut(s)	336, 692
Psp5II	RGGWCCY	1 cut(s)	617
Psp6I	CCWGG	1 cut(s)	606
PspGI	CCWGG	1 cut(s)	606
PspN4I	GGNNCC	2 cut(s)	453, 618
PspPI	GGNCC	2 cut(s)	354, 617
PspPPI	RGGWCCY	1 cut(s)	617
PstNI	CAGNNNCTG	2 cut(s)	800, 868
PsuI	RGATCY	1 cut(s)	827
PvuII	CAGCTG	1 cut(s)	905
RsaI	GTAC	2 cut(s)	453, 928
RsaNI	GTAC	2 cut(s)	452, 927
SalI	GTCGAC	1 cut(s)	815
SaqAI	TTAA	2 cut(s)	308, 483
SatI	GCNGC	6 cut(s)	265, 510, 801, 852, 903, 906
Sau3AI	GATC	3 cut(s)	433, 558, 827
Sau96I	GGNCC	2 cut(s)	354, 617
SchI	GAGTC	1 cut(s)	692
ScrFI	CCNGG	2 cut(s)	157, 608
SduI	GDGCHC	2 cut(s)	212, 630
SfaNI	GCATC	2 cut(s)	257, 764
SfcI	CTRYAG	1 cut(s)	345
SfuI	TTCGAA	1 cut(s)	163
SinI	GGWCC	1 cut(s)	617
SmlI	CTYRAG	1 cut(s)	930
SmoI	CTYRAG	1 cut(s)	930
Sse9I	AATT	5 cut(s)	33, 150, 276, 459, 855
SsiI	CCGC	2 cut(s)	264, 939
StyD4I	CCNGG	2 cut(s)	155, 606
StyI	CCWWGG	1 cut(s)	447
TaaI	ACNGT	3 cut(s)	321, 346, 926
TaiI	ACGT	2 cut(s)	633, 731
TaqI	TCGA	3 cut(s)	163, 408, 816
TasI	AATT	5 cut(s)	33, 150, 276, 459, 855
TauI	GCSGC	1 cut(s)	267
TfiI	GAWTC	4 cut(s)	44, 184, 488, 723
Tru1I	TTAA	2 cut(s)	308, 483
Tru9I	TTAA	2 cut(s)	308, 483
TscAI	CASTG	4 cut(s)	217, 498, 849, 873
TseFI	GTSAC	2 cut(s)	578, 782
TseI	GCWGC	5 cut(s)	509, 800, 851, 902, 905
Tsp45I	GTSAC	2 cut(s)	578, 782
TspDTI	ATGAA	4 cut(s)	17, 176, 204, 690
TspGWI	ACGGA	1 cut(s)	241
TspRI	CASTG	4 cut(s)	217, 498, 849, 873
VpaK11BI	GGWCC	1 cut(s)	617
VspI	ATTAAT	1 cut(s)	483
XmiI	GTMKAC	1 cut(s)	816

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.