Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr2

Orthogroup ID

OG0006227

Physical Location & Seq

Genomic Coordinates Forward (+)

6742032 .. 6746169

Gene Structure 4138 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000006396

Sequence Viewer

CDS Protein Promoter (2k)

Length: 918 bp

ATGGCTATTTATGCATTAAACCCTATTTCTAGTTTCTTCCTTCCCTCTGCCACCCCTTCTCTGTCTTCTCTCCTCTCTTCTTCTTCTTCTTCTTCTTTTGTGTCAAACTTGTGCGGAAGCATGGCTCTTTCCGGGGTTAGTAAAGATAGAGAGTTGAGAATTCATGAAAGTTTGGATGAGCTTAGCACTGATTTGGCAGACTACATTGCTGAAATATCAGAGGCGGCGGTGAAGGAGCGCGGCGTCTTTGCAGTGGCTTTATCTGGTGGTTCTCTCATTGGATTAATGGGAAAACTCTGTGAAGCTCCTTATAACAAGACTGTAGACTGGGCCAAGTGGTATATTTTTTGGGCTGACGAGCGTGTTGTGGCAAAAAATCATGTTGATAGCAATTACAAGCTTGCAAAGGACAGATTTTTGTCTAAGGTACCTATTATTCCGAGTCATGTGCATTCCATTAACGATTCAGTGTCAGCAGAGGAGGCTGCTGATGAGTACGAGTTTGTCATTCGACAGTTGGTGAAATCTCGTGTGATCAGTGTGTCAGATATAAGTGACTGCCCCAAGTTTGACCTAATCCTCCTAGGAATGGGCTCCGACGGCCATGTTGCCTCGCTATTCCCTAACCACTCAGCGCTCGAGGAGAAAGATGAGTGGGTAACCTATTTAACTGATTCCCCCAAACCTCCACCTGAGAGAATTACATTCACTTTGCCCGTCATCAACTCAGCATCCAACGTAGCCGTAGTCGTGACAGGTGAAAGCAAAGCGGAGGCTGCACACCTGGCAGTAGATGGTGTGGATCCGGACTTCCCATCAGTGCCTGCTGGAATTGTCCAGCCACTGAAGGGGAATTTGGCATGGTTTATGGATAAACCAGCAGCCTCAAAACTCAATGGCTTTCAATTTTCCGAGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006081 GO:0006098 GO:0006139 GO:0006725 GO:0006732 GO:0006733 GO:0006739 GO:0006753 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0009051 GO:0009117 GO:0009987 GO:0016787 GO:0016788 GO:0017057 GO:0019362 GO:0019637 GO:0019682 GO:0019693 GO:0034641 GO:0044237 GO:0044238 GO:0044281 GO:0044424 GO:0044444 GO:0044464 GO:0046483 GO:0046496 GO:0051156 GO:0051186 GO:0052689 GO:0055086 GO:0071704 GO:0072524 GO:1901135 GO:1901360 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko00030 ko01100 ko01110 ko01120 ko01130 ko01200 map00030 map01100 map01110 map01120 map01130 map01200

Pfam Domains

Protein Families

Glucosamine_iso

Protein Analysis

306

Amino Acids

32.98

Weight (kDa)

4.92

Isoelectric Point (pI)

29.98

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Glucosamine_iso	PF01182	58 - 288	9.7e-74	Glucosamine-6-phosphate isomerases/6-phosphogluconolactonase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0006227)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G13700 AT1G13700 AT1G13700
fragaria_vesca	FvH4_4g29730 FvH4_4g29730 FvH4_4g29730 FvH4_4g29730
malus_domestica	MD13G1060200.v1.1 MD16G1059500.v1.1
prunus_persica	Prupe.1G289200_v2.0.a1 Prupe.1G289200_v2.0.a1
pyrus_communis	pycom13g05360 pycom16g05190
rosa_chinensis	RchiOBHm_Chr4g0437981
rosa_laevigata	RLG00000006396
rosa_multiflora	Rmu_sc0007538.1_g000007
rosa_roxburghii	Rroxscaffold_5G00379140
rosa_rugosa	Rorug04G0306000 Rorug04G0306100 Rorug04G0306100 Rorug04G0306100
rosa_samantha	Rh4AG357700 Rh4BG368600 Rh4CG382700 Rh4DG363500
rosa_wichuraiana	Rw0G011500 Rw0G016170

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	312
Acc65I	GGTACC	1 cut(s)	427
AccB1I	GGYRCC	1 cut(s)	427
AccI	GTMKAC	1 cut(s)	324
AccII	CGCG	1 cut(s)	240
AccIII	TCCGGA	1 cut(s)	805
AciI	CCGC	5 cut(s)	114, 224, 227, 240, 770
AclWI	GGATC	2 cut(s)	797, 810
AcoI	YGGCCR	1 cut(s)	601
AcsI	RAATTY	2 cut(s)	159, 853
AcuI	CTGAAG	1 cut(s)	866
AcyI	GRCGYC	1 cut(s)	243
AfaI	GTAC	2 cut(s)	429, 497
AfeI	AGCGCT	1 cut(s)	636
AfiI	CCNNNNNNNGG	2 cut(s)	589, 848
AgsI	TTSAA	1 cut(s)	905
AjnI	CCWGG	1 cut(s)	783
AjuI	GAANNNNNNNTTGG	2 cut(s)	839, 871
AluBI	AGCT	3 cut(s)	181, 305, 400
AluI	AGCT	3 cut(s)	181, 305, 400
AlwI	GGATC	2 cut(s)	797, 810
AlwNI	CAGNNNCTG	2 cut(s)	824, 844
Ama87I	CYCGRG	1 cut(s)	638
Aor13HI	TCCGGA	1 cut(s)	805
Aor51HI	AGCGCT	1 cut(s)	636
AoxI	GGCC	2 cut(s)	330, 601
ApeKI	GCWGC	3 cut(s)	485, 776, 881
ApoI	RAATTY	2 cut(s)	159, 853
AseI	ATTAAT	1 cut(s)	284
Asp718I	GGTACC	1 cut(s)	427
AspA2I	CCTAGG	1 cut(s)	583
AspLEI	GCGC	2 cut(s)	240, 637
AspS9I	GGNCC	1 cut(s)	330
AsuC2I	CCSGG	1 cut(s)	133
AsuHPI	GGTGA	3 cut(s)	241, 532, 770
AvaI	CYCGRG	1 cut(s)	638
AvrII	CCTAGG	1 cut(s)	583
BamHI	GGATCC	1 cut(s)	802
BanI	GGYRCC	1 cut(s)	427
BanII	GRGCYC	1 cut(s)	596
BauI	CACGAG	1 cut(s)	528
BbsI	GAAGAC	1 cut(s)	57
BbvI	GCAGC	3 cut(s)	472, 763, 893
BccI	CCATC	2 cut(s)	788, 823
BceAI	ACGGC	2 cut(s)	616, 728
BcgI	CGANNNNNNTGC	2 cut(s)	430, 464
BciT130I	CCWGG	1 cut(s)	785
BclI	TGATCA	1 cut(s)	534
BcnI	CCSGG	1 cut(s)	133
BfaI	CTAG	2 cut(s)	30, 584
BfmI	CTRYAG	1 cut(s)	321
BfoI	RGCGCY	1 cut(s)	638
BisI	GCNGC	5 cut(s)	225, 241, 486, 777, 882
BlnI	CCTAGG	1 cut(s)	583
BlpI	GCTNAGC	1 cut(s)	182
BlsI	GCNGC	5 cut(s)	226, 242, 487, 778, 883
Bme1390I	CCNGG	2 cut(s)	133, 785
BmeT110I	CYCGRG	1 cut(s)	638
BmgT120I	GGNCC	1 cut(s)	330
BmiI	GGNNCC	3 cut(s)	429, 595, 804
BmrFI	CCNGG	2 cut(s)	133, 785
BmrI	ACTGGG	1 cut(s)	337
BmsI	GCATC	1 cut(s)	740
BmuI	ACTGGG	1 cut(s)	337
BpiI	GAAGAC	1 cut(s)	57
Bpu1102I	GCTNAGC	1 cut(s)	182
BpuMI	CCSGG	1 cut(s)	133
BsaHI	GRCGYC	1 cut(s)	243
BsaJI	CCNNGG	2 cut(s)	132, 583
BsaWI	WCCGGW	1 cut(s)	805
Bsc4I	CCNNNNNNNGG	2 cut(s)	589, 848
Bse1I	ACTGG	1 cut(s)	332
Bse3DI	GCAATG	1 cut(s)	204
BseAI	TCCGGA	1 cut(s)	805
BseBI	CCWGG	1 cut(s)	785
BseDI	CCNNGG	2 cut(s)	132, 583
BseGI	GGATG	2 cut(s)	181, 731
BseLI	CCNNNNNNNGG	2 cut(s)	589, 848
BseMI	GCAATG	1 cut(s)	204
BseMII	CTCAG	3 cut(s)	645, 684, 741
BseNI	ACTGG	1 cut(s)	332
BseRI	GAGGAG	3 cut(s)	62, 494, 656
BseXI	GCAGC	3 cut(s)	472, 763, 893
BsgI	GTGCAG	1 cut(s)	762
Bsh1236I	CGCG	1 cut(s)	240
BshFI	GGCC	2 cut(s)	332, 603
BshNI	GGYRCC	1 cut(s)	427
BsiHKCI	CYCGRG	1 cut(s)	638
BsiSI	CCGG	2 cut(s)	132, 806
BslI	CCNNNNNNNGG	2 cut(s)	589, 848
BsmI	GAATGC	1 cut(s)	451
BsnI	GGCC	2 cut(s)	332, 603
BsoBI	CYCGRG	1 cut(s)	638
Bsp1286I	GDGCHC	1 cut(s)	596
Bsp13I	TCCGGA	1 cut(s)	805
Bsp143I	GATC	2 cut(s)	534, 802
Bsp1720I	GCTNAGC	1 cut(s)	182
BspACI	CCGC	5 cut(s)	114, 224, 227, 240, 770
BspANI	GGCC	2 cut(s)	332, 603
BspCNI	CTCAG	3 cut(s)	644, 685, 740
BspEI	TCCGGA	1 cut(s)	805
BspFNI	CGCG	1 cut(s)	240
BspHI	TCATGA	1 cut(s)	163
BspLI	GGNNCC	3 cut(s)	429, 595, 804
BspPI	GGATC	2 cut(s)	797, 810
BspT107I	GGYRCC	1 cut(s)	427
BsrDI	GCAATG	1 cut(s)	204
BsrI	ACTGG	1 cut(s)	332
BssECI	CCNNGG	2 cut(s)	132, 583
BssMI	GATC	2 cut(s)	534, 802
BssNI	GRCGYC	1 cut(s)	243
BssSI	CACGAG	1 cut(s)	528
BssT1I	CCWWGG	1 cut(s)	583
Bst2BI	CACGAG	1 cut(s)	528
Bst2UI	CCWGG	1 cut(s)	785
Bst4CI	ACNGT	2 cut(s)	322, 516
Bst6I	CTCTTC	1 cut(s)	82
BstACI	GRCGYC	1 cut(s)	243
BstC8I	GCNNGC	2 cut(s)	402, 825
BstDEI	CTNAG	5 cut(s)	182, 423, 631, 693, 727
BstEII	GGTNACC	1 cut(s)	658
BstF5I	GGATG	2 cut(s)	181, 731
BstFNI	CGCG	1 cut(s)	240
BstH2I	RGCGCY	1 cut(s)	638
BstHHI	GCGC	2 cut(s)	240, 637
BstKTI	GATC	2 cut(s)	537, 805
BstMBI	GATC	2 cut(s)	534, 802
BstMWI	GCNNNNNNNGC	5 cut(s)	11, 482, 600, 776, 785
BstNI	CCWGG	1 cut(s)	785
BstPI	GGTNACC	1 cut(s)	658
BstSCI	CCNGG	2 cut(s)	131, 783
BstSFI	CTRYAG	1 cut(s)	321
BstUI	CGCG	1 cut(s)	240
BstV1I	GCAGC	3 cut(s)	472, 763, 893
BstV2I	GAAGAC	1 cut(s)	57
BstX2I	RGATCY	1 cut(s)	802
BstYI	RGATCY	1 cut(s)	802
BsuRI	GGCC	2 cut(s)	332, 603
BtsCI	GGATG	2 cut(s)	181, 731
BtsI	GCAGTG	1 cut(s)	258
BtsIMutI	CAGTG	6 cut(s)	186, 258, 474, 544, 825, 842
Cac8I	GCNNGC	2 cut(s)	402, 825
CaiI	CAGNNNCTG	2 cut(s)	824, 844
CciI	TCATGA	1 cut(s)	163
CfoI	GCGC	2 cut(s)	240, 637
Cfr13I	GGNCC	1 cut(s)	330
CseI	GACGC	1 cut(s)	232
Csp6I	GTAC	2 cut(s)	428, 496
CviAII	CATG	6 cut(s)	121, 164, 380, 446, 605, 861
CviQI	GTAC	2 cut(s)	428, 496
DdeI	CTNAG	5 cut(s)	182, 423, 631, 693, 727
DpnI	GATC	2 cut(s)	536, 804
DpnII	GATC	2 cut(s)	534, 802
EaeI	YGGCCR	1 cut(s)	601
Eam1104I	CTCTTC	1 cut(s)	82
EarI	CTCTTC	1 cut(s)	82
Eco130I	CCWWGG	1 cut(s)	583
Eco24I	GRGCYC	1 cut(s)	596
Eco47III	AGCGCT	1 cut(s)	636
Eco57I	CTGAAG	1 cut(s)	866
Eco88I	CYCGRG	1 cut(s)	638
Eco91I	GGTNACC	1 cut(s)	658
EcoO65I	GGTNACC	1 cut(s)	658
EcoRI	GAATTC	1 cut(s)	159
EcoRII	CCWGG	1 cut(s)	783
EcoT14I	CCWWGG	1 cut(s)	583
EcoT22I	ATGCAT	1 cut(s)	16
EcoT38I	GRGCYC	1 cut(s)	596
ErhI	CCWWGG	1 cut(s)	583
FaeI	CATG	6 cut(s)	124, 167, 383, 449, 608, 864
FatI	CATG	6 cut(s)	120, 163, 379, 445, 604, 860
FbaI	TGATCA	1 cut(s)	534
FblI	GTMKAC	1 cut(s)	324
Fnu4HI	GCNGC	5 cut(s)	225, 241, 486, 777, 882
FokI	GGATG	2 cut(s)	188, 718
FriOI	GRGCYC	1 cut(s)	596
Fsp4HI	GCNGC	5 cut(s)	225, 241, 486, 777, 882
FspBI	CTAG	2 cut(s)	30, 584
GlaI	GCGC	2 cut(s)	239, 636
GluI	GCNGC	5 cut(s)	225, 241, 486, 777, 882
HaeII	RGCGCY	1 cut(s)	638
HaeIII	GGCC	2 cut(s)	332, 603
HapII	CCGG	2 cut(s)	132, 806
HgaI	GACGC	1 cut(s)	232
HhaI	GCGC	2 cut(s)	240, 637
Hin1I	GRCGYC	1 cut(s)	243
Hin1II	CATG	6 cut(s)	124, 167, 383, 449, 608, 864
Hin6I	GCGC	2 cut(s)	238, 635
HinP1I	GCGC	2 cut(s)	238, 635
HindIII	AAGCTT	1 cut(s)	398
HinfI	GANTC	3 cut(s)	442, 464, 674
HpaII	CCGG	2 cut(s)	132, 806
HphI	GGTGA	3 cut(s)	241, 532, 770
Hpy166II	GTNNAC	1 cut(s)	325
Hpy188I	TCNGA	5 cut(s)	220, 441, 547, 598, 913
Hpy188III	TCNNGA	3 cut(s)	164, 751, 806
Hpy8I	GTNNAC	1 cut(s)	325
Hpy99I	CGWCG	1 cut(s)	602
HpyAV	CCTTC	4 cut(s)	50, 66, 226, 841
HpyCH4III	ACNGT	2 cut(s)	322, 516
HpyCH4IV	ACGT	1 cut(s)	738
HpyCH4V	TGCA	5 cut(s)	14, 251, 404, 451, 779
HpyF10VI	GCNNNNNNNGC	5 cut(s)	11, 482, 600, 776, 785
HpyF3I	CTNAG	5 cut(s)	182, 423, 631, 693, 727
HpySE526I	ACGT	1 cut(s)	738
Hsp92I	GRCGYC	1 cut(s)	243
Hsp92II	CATG	6 cut(s)	124, 167, 383, 449, 608, 864
HspAI	GCGC	2 cut(s)	238, 635
Kpn2I	TCCGGA	1 cut(s)	805
KpnI	GGTACC	1 cut(s)	431
Ksp22I	TGATCA	1 cut(s)	534
Kzo9I	GATC	2 cut(s)	534, 802
LmnI	GCTCC	3 cut(s)	235, 310, 599
Lsp1109I	GCAGC	3 cut(s)	472, 763, 893
LweI	GCATC	1 cut(s)	740
MaeI	CTAG	2 cut(s)	30, 584
MaeII	ACGT	1 cut(s)	738
MaeIII	GTNAC	3 cut(s)	554, 658, 751
MalI	GATC	2 cut(s)	536, 804
MboI	GATC	2 cut(s)	534, 802
MboII	GAAGA	8 cut(s)	28, 57, 69, 72, 75, 78, 81, 84
MflI	RGATCY	1 cut(s)	802
MhlI	GDGCHC	1 cut(s)	596
MluCI	AATT	6 cut(s)	159, 391, 699, 831, 853, 905
MlyI	GAGTC	1 cut(s)	451
MmeI	TCCRAC	2 cut(s)	621, 759
Mph1103I	ATGCAT	1 cut(s)	16
MroI	TCCGGA	1 cut(s)	805
MseI	TTAA	4 cut(s)	17, 284, 459, 668
MspI	CCGG	2 cut(s)	132, 806
MspR9I	CCNGG	2 cut(s)	133, 785
Mva1269I	GAATGC	1 cut(s)	451
MvaI	CCWGG	1 cut(s)	785
MvnI	CGCG	1 cut(s)	240
MwoI	GCNNNNNNNGC	5 cut(s)	11, 482, 600, 776, 785
NciI	CCSGG	1 cut(s)	133
NdeII	GATC	2 cut(s)	534, 802
NlaIII	CATG	6 cut(s)	124, 167, 383, 449, 608, 864
NlaIV	GGNNCC	3 cut(s)	429, 595, 804
NmuCI	GTSAC	2 cut(s)	554, 751
NsiI	ATGCAT	1 cut(s)	16
PaeR7I	CTCGAG	1 cut(s)	638
PagI	TCATGA	1 cut(s)	163
PctI	GAATGC	1 cut(s)	451
PfeI	GAWTC	2 cut(s)	464, 674
PkrI	GCNGC	5 cut(s)	226, 242, 487, 778, 883
PleI	GAGTC	1 cut(s)	450
PpsI	GAGTC	1 cut(s)	450
PshBI	ATTAAT	1 cut(s)	284
PsiI	TTATAA	1 cut(s)	312
Psp6I	CCWGG	1 cut(s)	783
PspEI	GGTNACC	1 cut(s)	658
PspGI	CCWGG	1 cut(s)	783
PspN4I	GGNNCC	3 cut(s)	429, 595, 804
PspPI	GGNCC	1 cut(s)	330
PspXI	VCTCGAGB	1 cut(s)	638
PstNI	CAGNNNCTG	2 cut(s)	824, 844
PsuI	RGATCY	1 cut(s)	802
RsaI	GTAC	2 cut(s)	429, 497
RsaNI	GTAC	2 cut(s)	428, 496
SaqAI	TTAA	4 cut(s)	17, 284, 459, 668
SatI	GCNGC	5 cut(s)	225, 241, 486, 777, 882
Sau3AI	GATC	2 cut(s)	534, 802
Sau96I	GGNCC	1 cut(s)	330
SchI	GAGTC	1 cut(s)	451
ScrFI	CCNGG	2 cut(s)	133, 785
SduI	GDGCHC	1 cut(s)	596
SfaNI	GCATC	1 cut(s)	740
SfcI	CTRYAG	1 cut(s)	321
Sfr274I	CTCGAG	1 cut(s)	638
SlaI	CTCGAG	1 cut(s)	638
SmlI	CTYRAG	1 cut(s)	638
SmoI	CTYRAG	1 cut(s)	638
Sse9I	AATT	6 cut(s)	159, 391, 699, 831, 853, 905
SsiI	CCGC	5 cut(s)	114, 224, 227, 240, 770
SspMI	CTAG	2 cut(s)	30, 584
StyD4I	CCNGG	2 cut(s)	131, 783
StyI	CCWWGG	1 cut(s)	583
TaaI	ACNGT	2 cut(s)	322, 516
TaiI	ACGT	1 cut(s)	741
TaqI	TCGA	2 cut(s)	511, 639
TasI	AATT	6 cut(s)	159, 391, 699, 831, 853, 905
TauI	GCSGC	2 cut(s)	227, 243
TfiI	GAWTC	2 cut(s)	464, 674
Tru1I	TTAA	4 cut(s)	17, 284, 459, 668
Tru9I	TTAA	4 cut(s)	17, 284, 459, 668
TscAI	CASTG	6 cut(s)	193, 258, 474, 544, 825, 849
TseFI	GTSAC	2 cut(s)	554, 751
TseI	GCWGC	3 cut(s)	485, 776, 881
Tsp45I	GTSAC	2 cut(s)	554, 751
TspDTI	ATGAA	2 cut(s)	152, 180
TspRI	CASTG	6 cut(s)	193, 258, 474, 544, 825, 849
VspI	ATTAAT	1 cut(s)	284
XapI	RAATTY	2 cut(s)	159, 853
XhoI	CTCGAG	1 cut(s)	638
XmaJI	CCTAGG	1 cut(s)	583
XmiI	GTMKAC	1 cut(s)	324
XspI	CTAG	2 cut(s)	30, 584
Zsp2I	ATGCAT	1 cut(s)	16

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.