Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000005

Orthogroup ID

OG0006227

Physical Location & Seq

Genomic Coordinates Reverse (-)

59621522 .. 59625553

Gene Structure 4032 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_5G00379140.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 798 bp

ATGGCTCTTTCCGGGGTTAGTAAAGATAGAGAGTTGCGAATTCATGAAAGTTTGGATGAGCTTAGCACTGATTTGGCAGACTACATTGCTGAAATATCAGAGGCAGCGGTGAAGGAGCGCGGCGTCTTTGCAATGGCTTTATCTGGTGGTTCTCTCATTGGATTAATGGGAAAACTCTGTGAAGCTCCTTATAACAAGACTGTAGACTGGGCCAAGTGGTATATTTTTTGGGCTGACGAGCGTGTTGTGGCAAAAAATCATGTTGATAGCAATTACAAGCTTGCAAAGGACCGGTTTTTGTCTAAGGTACCTATTATTCCGAGTCATGTGCATTCCATTAACGATTCAGTGTCAGCAGAGGAGGCTGCTGATGAGTACGAGTTTGTCGTTCGACAGTTGGTGAAATCTCGTGTGATCAGTGTGTCAGATATAAGTGACTGCCCCAAGTTTGACCTAATCCTCCTAGGAATGGGCTCCGACGGCCATGTTGCCTCGCTGTTCCCTAACCACTCAGCGCTCGAGGAGAAAGATGAGTGGGTAACCTATTTAACTGATTCCCCCAAACCTCCACCTGAGAGAATTACATTCACTTTGCCCGTCATCAACTCAGCATCCAACGTAGCCGTAGTCGTGACAGGTGAAAGCAAAGCGGAGGCTGCACACCTGGCAGTAGATGGTGTGGATCCGGACTTGCCATCGGTGCCTGCTGGACTTGTCCAGCCACTGAAGGGGAATTTGGCATGGTTTATGGATAAACCAGCAGCCTCAAAACTCAATGGCTTTCAATTTTCCGAGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006081 GO:0006098 GO:0006139 GO:0006725 GO:0006732 GO:0006733 GO:0006739 GO:0006753 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0009051 GO:0009117 GO:0009987 GO:0016787 GO:0016788 GO:0017057 GO:0019362 GO:0019637 GO:0019682 GO:0019693 GO:0034641 GO:0044237 GO:0044238 GO:0044281 GO:0044424 GO:0044444 GO:0044464 GO:0046483 GO:0046496 GO:0051156 GO:0051186 GO:0052689 GO:0055086 GO:0071704 GO:0072524 GO:1901135 GO:1901360 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko00030 ko01100 ko01110 ko01120 ko01130 ko01200 map00030 map01100 map01110 map01120 map01130 map01200

Pfam Domains

Protein Families

Glucosamine_iso

Protein Analysis

265

Amino Acids

28.93

Weight (kDa)

4.92

Isoelectric Point (pI)

25.14

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Glucosamine_iso	PF01182	18 - 248	1.4e-73	Glucosamine-6-phosphate isomerases/6-phosphogluconolactonase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006227)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G13700 AT1G13700 AT1G13700
fragaria_vesca	FvH4_4g29730 FvH4_4g29730 FvH4_4g29730 FvH4_4g29730
malus_domestica	MD13G1060200.v1.1 MD16G1059500.v1.1
prunus_persica	Prupe.1G289200_v2.0.a1 Prupe.1G289200_v2.0.a1
pyrus_communis	pycom13g05360 pycom16g05190
rosa_chinensis	RchiOBHm_Chr4g0437981
rosa_laevigata	RLG00000006396
rosa_multiflora	Rmu_sc0007538.1_g000007
rosa_roxburghii	Rroxscaffold_5G00379140
rosa_rugosa	Rorug04G0306000 Rorug04G0306100 Rorug04G0306100 Rorug04G0306100
rosa_samantha	Rh4AG357700 Rh4BG368600 Rh4CG382700 Rh4DG363500
rosa_wichuraiana	Rw0G011500 Rw0G016170

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	192
Acc65I	GGTACC	1 cut(s)	307
AccB1I	GGYRCC	2 cut(s)	307, 700
AccI	GTMKAC	1 cut(s)	204
AccII	CGCG	1 cut(s)	120
AccIII	TCCGGA	1 cut(s)	685
AciI	CCGC	3 cut(s)	107, 120, 650
AclWI	GGATC	2 cut(s)	677, 690
AcoI	YGGCCR	1 cut(s)	481
AcsI	RAATTY	2 cut(s)	39, 733
AcuI	CTGAAG	1 cut(s)	746
AcyI	GRCGYC	1 cut(s)	123
AfaI	GTAC	2 cut(s)	309, 377
AfeI	AGCGCT	1 cut(s)	516
AfiI	CCNNNNNNNGG	2 cut(s)	469, 728
AgeI	ACCGGT	1 cut(s)	291
AgsI	TTSAA	1 cut(s)	785
AjnI	CCWGG	1 cut(s)	663
AjuI	GAANNNNNNNTTGG	2 cut(s)	719, 751
AluBI	AGCT	3 cut(s)	61, 185, 280
AluI	AGCT	3 cut(s)	61, 185, 280
AlwI	GGATC	2 cut(s)	677, 690
AlwNI	CAGNNNCTG	1 cut(s)	724
Ama87I	CYCGRG	1 cut(s)	518
Aor13HI	TCCGGA	1 cut(s)	685
Aor51HI	AGCGCT	1 cut(s)	516
AoxI	GGCC	2 cut(s)	210, 481
ApeKI	GCWGC	4 cut(s)	104, 365, 656, 761
ApoI	RAATTY	2 cut(s)	39, 733
AseI	ATTAAT	1 cut(s)	164
AsiGI	ACCGGT	1 cut(s)	291
Asp718I	GGTACC	1 cut(s)	307
AspA2I	CCTAGG	1 cut(s)	463
AspLEI	GCGC	2 cut(s)	120, 517
AspS9I	GGNCC	2 cut(s)	210, 289
AsuC2I	CCSGG	1 cut(s)	13
AsuHPI	GGTGA	3 cut(s)	121, 412, 650
AvaI	CYCGRG	1 cut(s)	518
AvaII	GGWCC	1 cut(s)	289
AvrII	CCTAGG	1 cut(s)	463
BamHI	GGATCC	1 cut(s)	682
BanI	GGYRCC	2 cut(s)	307, 700
BanII	GRGCYC	1 cut(s)	476
BauI	CACGAG	1 cut(s)	408
BbvI	GCAGC	4 cut(s)	116, 352, 643, 773
BccI	CCATC	2 cut(s)	668, 703
BceAI	ACGGC	2 cut(s)	496, 608
BcgI	CGANNNNNNTGC	2 cut(s)	310, 344
BciT130I	CCWGG	1 cut(s)	665
BclI	TGATCA	1 cut(s)	414
BcnI	CCSGG	1 cut(s)	13
BfaI	CTAG	1 cut(s)	464
BfmI	CTRYAG	1 cut(s)	201
BfoI	RGCGCY	1 cut(s)	518
BisI	GCNGC	5 cut(s)	105, 121, 366, 657, 762
BlnI	CCTAGG	1 cut(s)	463
BlpI	GCTNAGC	1 cut(s)	62
BlsI	GCNGC	5 cut(s)	106, 122, 367, 658, 763
Bme1390I	CCNGG	2 cut(s)	13, 665
Bme18I	GGWCC	1 cut(s)	289
BmeT110I	CYCGRG	1 cut(s)	518
BmgT120I	GGNCC	2 cut(s)	210, 289
BmiI	GGNNCC	4 cut(s)	309, 475, 684, 702
BmrFI	CCNGG	2 cut(s)	13, 665
BmrI	ACTGGG	1 cut(s)	217
BmsI	GCATC	1 cut(s)	620
BmuI	ACTGGG	1 cut(s)	217
Bpu1102I	GCTNAGC	1 cut(s)	62
BpuMI	CCSGG	1 cut(s)	13
BsaHI	GRCGYC	1 cut(s)	123
BsaJI	CCNNGG	2 cut(s)	12, 463
BsaWI	WCCGGW	2 cut(s)	291, 685
Bsc4I	CCNNNNNNNGG	2 cut(s)	469, 728
Bse118I	RCCGGY	1 cut(s)	291
Bse1I	ACTGG	1 cut(s)	212
Bse3DI	GCAATG	2 cut(s)	84, 138
BseAI	TCCGGA	1 cut(s)	685
BseBI	CCWGG	1 cut(s)	665
BseDI	CCNNGG	2 cut(s)	12, 463
BseGI	GGATG	2 cut(s)	61, 611
BseLI	CCNNNNNNNGG	2 cut(s)	469, 728
BseMI	GCAATG	2 cut(s)	84, 138
BseMII	CTCAG	3 cut(s)	525, 564, 621
BseNI	ACTGG	1 cut(s)	212
BseRI	GAGGAG	2 cut(s)	374, 536
BseXI	GCAGC	4 cut(s)	116, 352, 643, 773
BsgI	GTGCAG	1 cut(s)	642
Bsh1236I	CGCG	1 cut(s)	120
BshFI	GGCC	2 cut(s)	212, 483
BshNI	GGYRCC	2 cut(s)	307, 700
BshTI	ACCGGT	1 cut(s)	291
BsiHKCI	CYCGRG	1 cut(s)	518
BsiSI	CCGG	3 cut(s)	12, 292, 686
BslI	CCNNNNNNNGG	2 cut(s)	469, 728
BsmI	GAATGC	1 cut(s)	331
BsnI	GGCC	2 cut(s)	212, 483
BsoBI	CYCGRG	1 cut(s)	518
Bsp1286I	GDGCHC	1 cut(s)	476
Bsp13I	TCCGGA	1 cut(s)	685
Bsp143I	GATC	2 cut(s)	414, 682
Bsp1720I	GCTNAGC	1 cut(s)	62
BspACI	CCGC	3 cut(s)	107, 120, 650
BspANI	GGCC	2 cut(s)	212, 483
BspCNI	CTCAG	3 cut(s)	524, 565, 620
BspEI	TCCGGA	1 cut(s)	685
BspFNI	CGCG	1 cut(s)	120
BspHI	TCATGA	1 cut(s)	43
BspLI	GGNNCC	4 cut(s)	309, 475, 684, 702
BspPI	GGATC	2 cut(s)	677, 690
BspT107I	GGYRCC	2 cut(s)	307, 700
BsrDI	GCAATG	2 cut(s)	84, 138
BsrFI	RCCGGY	1 cut(s)	291
BsrI	ACTGG	1 cut(s)	212
BssAI	RCCGGY	1 cut(s)	291
BssECI	CCNNGG	2 cut(s)	12, 463
BssMI	GATC	2 cut(s)	414, 682
BssNI	GRCGYC	1 cut(s)	123
BssSI	CACGAG	1 cut(s)	408
BssT1I	CCWWGG	1 cut(s)	463
Bst2BI	CACGAG	1 cut(s)	408
Bst2UI	CCWGG	1 cut(s)	665
Bst4CI	ACNGT	2 cut(s)	202, 396
BstACI	GRCGYC	1 cut(s)	123
BstC8I	GCNNGC	2 cut(s)	282, 705
BstDEI	CTNAG	5 cut(s)	62, 303, 511, 573, 607
BstEII	GGTNACC	1 cut(s)	538
BstF5I	GGATG	2 cut(s)	61, 611
BstFNI	CGCG	1 cut(s)	120
BstH2I	RGCGCY	1 cut(s)	518
BstHHI	GCGC	2 cut(s)	120, 517
BstKTI	GATC	2 cut(s)	417, 685
BstMBI	GATC	2 cut(s)	414, 682
BstMWI	GCNNNNNNNGC	5 cut(s)	362, 480, 656, 665, 700
BstNI	CCWGG	1 cut(s)	665
BstPI	GGTNACC	1 cut(s)	538
BstSCI	CCNGG	2 cut(s)	11, 663
BstSFI	CTRYAG	1 cut(s)	201
BstUI	CGCG	1 cut(s)	120
BstV1I	GCAGC	4 cut(s)	116, 352, 643, 773
BstX2I	RGATCY	1 cut(s)	682
BstYI	RGATCY	1 cut(s)	682
BsuRI	GGCC	2 cut(s)	212, 483
BtsCI	GGATG	2 cut(s)	61, 611
BtsIMutI	CAGTG	4 cut(s)	66, 354, 424, 722
Cac8I	GCNNGC	2 cut(s)	282, 705
CaiI	CAGNNNCTG	1 cut(s)	724
CciI	TCATGA	1 cut(s)	43
CfoI	GCGC	2 cut(s)	120, 517
Cfr10I	RCCGGY	1 cut(s)	291
Cfr13I	GGNCC	2 cut(s)	210, 289
CseI	GACGC	1 cut(s)	112
Csp6I	GTAC	2 cut(s)	308, 376
CspAI	ACCGGT	1 cut(s)	291
CviAII	CATG	5 cut(s)	44, 260, 326, 485, 741
CviQI	GTAC	2 cut(s)	308, 376
DdeI	CTNAG	5 cut(s)	62, 303, 511, 573, 607
DpnI	GATC	2 cut(s)	416, 684
DpnII	GATC	2 cut(s)	414, 682
EaeI	YGGCCR	1 cut(s)	481
Eco130I	CCWWGG	1 cut(s)	463
Eco24I	GRGCYC	1 cut(s)	476
Eco47I	GGWCC	1 cut(s)	289
Eco47III	AGCGCT	1 cut(s)	516
Eco57I	CTGAAG	1 cut(s)	746
Eco88I	CYCGRG	1 cut(s)	518
Eco91I	GGTNACC	1 cut(s)	538
EcoO65I	GGTNACC	1 cut(s)	538
EcoRI	GAATTC	1 cut(s)	39
EcoRII	CCWGG	1 cut(s)	663
EcoT14I	CCWWGG	1 cut(s)	463
EcoT38I	GRGCYC	1 cut(s)	476
ErhI	CCWWGG	1 cut(s)	463
FaeI	CATG	5 cut(s)	47, 263, 329, 488, 744
FaiI	YATR	9 cut(s)	45, 192, 222, 261, 327, 431, 486, 742, 749
FatI	CATG	5 cut(s)	43, 259, 325, 484, 740
FbaI	TGATCA	1 cut(s)	414
FblI	GTMKAC	1 cut(s)	204
Fnu4HI	GCNGC	5 cut(s)	105, 121, 366, 657, 762
FokI	GGATG	2 cut(s)	68, 598
FriOI	GRGCYC	1 cut(s)	476
Fsp4HI	GCNGC	5 cut(s)	105, 121, 366, 657, 762
FspBI	CTAG	1 cut(s)	464
GlaI	GCGC	2 cut(s)	119, 516
GluI	GCNGC	5 cut(s)	105, 121, 366, 657, 762
HaeII	RGCGCY	1 cut(s)	518
HaeIII	GGCC	2 cut(s)	212, 483
HapII	CCGG	3 cut(s)	12, 292, 686
HgaI	GACGC	1 cut(s)	112
HhaI	GCGC	2 cut(s)	120, 517
Hin1I	GRCGYC	1 cut(s)	123
Hin1II	CATG	5 cut(s)	47, 263, 329, 488, 744
Hin6I	GCGC	2 cut(s)	118, 515
HinP1I	GCGC	2 cut(s)	118, 515
HindIII	AAGCTT	1 cut(s)	278
HinfI	GANTC	3 cut(s)	322, 344, 554
HpaII	CCGG	3 cut(s)	12, 292, 686
HphI	GGTGA	3 cut(s)	121, 412, 650
Hpy166II	GTNNAC	1 cut(s)	205
Hpy188I	TCNGA	5 cut(s)	100, 321, 427, 478, 793
Hpy188III	TCNNGA	3 cut(s)	44, 631, 686
Hpy8I	GTNNAC	1 cut(s)	205
Hpy99I	CGWCG	1 cut(s)	482
HpyAV	CCTTC	2 cut(s)	106, 721
HpyCH4III	ACNGT	2 cut(s)	202, 396
HpyCH4IV	ACGT	1 cut(s)	618
HpyCH4V	TGCA	4 cut(s)	131, 284, 331, 659
HpyF10VI	GCNNNNNNNGC	5 cut(s)	362, 480, 656, 665, 700
HpyF3I	CTNAG	5 cut(s)	62, 303, 511, 573, 607
HpySE526I	ACGT	1 cut(s)	618
Hsp92I	GRCGYC	1 cut(s)	123
Hsp92II	CATG	5 cut(s)	47, 263, 329, 488, 744
HspAI	GCGC	2 cut(s)	118, 515
Kpn2I	TCCGGA	1 cut(s)	685
KpnI	GGTACC	1 cut(s)	311
Ksp22I	TGATCA	1 cut(s)	414
Kzo9I	GATC	2 cut(s)	414, 682
LmnI	GCTCC	3 cut(s)	115, 190, 479
Lsp1109I	GCAGC	4 cut(s)	116, 352, 643, 773
LweI	GCATC	1 cut(s)	620
MaeI	CTAG	1 cut(s)	464
MaeII	ACGT	1 cut(s)	618
MaeIII	GTNAC	3 cut(s)	434, 538, 631
MalI	GATC	2 cut(s)	416, 684
MboI	GATC	2 cut(s)	414, 682
MflI	RGATCY	1 cut(s)	682
MhlI	GDGCHC	1 cut(s)	476
MluCI	AATT	5 cut(s)	39, 271, 579, 733, 785
MlyI	GAGTC	1 cut(s)	331
MmeI	TCCRAC	2 cut(s)	501, 639
MnlI	CCTC	9 cut(s)	94, 352, 355, 470, 502, 514, 576, 646, 775
MroI	TCCGGA	1 cut(s)	685
MseI	TTAA	3 cut(s)	164, 339, 548
MspA1I	CMGCKG	1 cut(s)	107
MspI	CCGG	3 cut(s)	12, 292, 686
MspR9I	CCNGG	2 cut(s)	13, 665
Mva1269I	GAATGC	1 cut(s)	331
MvaI	CCWGG	1 cut(s)	665
MvnI	CGCG	1 cut(s)	120
MwoI	GCNNNNNNNGC	5 cut(s)	362, 480, 656, 665, 700
NciI	CCSGG	1 cut(s)	13
NdeII	GATC	2 cut(s)	414, 682
NlaIII	CATG	5 cut(s)	47, 263, 329, 488, 744
NlaIV	GGNNCC	4 cut(s)	309, 475, 684, 702
NmuCI	GTSAC	2 cut(s)	434, 631
PaeR7I	CTCGAG	1 cut(s)	518
PagI	TCATGA	1 cut(s)	43
PcsI	WCGNNNNNNNCGW	1 cut(s)	384
PctI	GAATGC	1 cut(s)	331
PfeI	GAWTC	2 cut(s)	344, 554
PinAI	ACCGGT	1 cut(s)	291
PkrI	GCNGC	5 cut(s)	106, 122, 367, 658, 763
PleI	GAGTC	1 cut(s)	330
PpsI	GAGTC	1 cut(s)	330
PshBI	ATTAAT	1 cut(s)	164
PsiI	TTATAA	1 cut(s)	192
Psp6I	CCWGG	1 cut(s)	663
PspEI	GGTNACC	1 cut(s)	538
PspGI	CCWGG	1 cut(s)	663
PspN4I	GGNNCC	4 cut(s)	309, 475, 684, 702
PspPI	GGNCC	2 cut(s)	210, 289
PspXI	VCTCGAGB	1 cut(s)	518
PstNI	CAGNNNCTG	1 cut(s)	724
PsuI	RGATCY	1 cut(s)	682
RsaI	GTAC	2 cut(s)	309, 377
RsaNI	GTAC	2 cut(s)	308, 376
SaqAI	TTAA	3 cut(s)	164, 339, 548
SatI	GCNGC	5 cut(s)	105, 121, 366, 657, 762
Sau3AI	GATC	2 cut(s)	414, 682
Sau96I	GGNCC	2 cut(s)	210, 289
SchI	GAGTC	1 cut(s)	331
ScrFI	CCNGG	2 cut(s)	13, 665
SduI	GDGCHC	1 cut(s)	476
SfaNI	GCATC	1 cut(s)	620
SfcI	CTRYAG	1 cut(s)	201
Sfr274I	CTCGAG	1 cut(s)	518
SinI	GGWCC	1 cut(s)	289
SlaI	CTCGAG	1 cut(s)	518
SmlI	CTYRAG	1 cut(s)	518
SmoI	CTYRAG	1 cut(s)	518
Sse9I	AATT	5 cut(s)	39, 271, 579, 733, 785
SsiI	CCGC	3 cut(s)	107, 120, 650
SspMI	CTAG	1 cut(s)	464
StyD4I	CCNGG	2 cut(s)	11, 663
StyI	CCWWGG	1 cut(s)	463
TaaI	ACNGT	2 cut(s)	202, 396
TaiI	ACGT	1 cut(s)	621
TaqI	TCGA	2 cut(s)	391, 519
TasI	AATT	5 cut(s)	39, 271, 579, 733, 785
TauI	GCSGC	1 cut(s)	123
TfiI	GAWTC	2 cut(s)	344, 554
Tru1I	TTAA	3 cut(s)	164, 339, 548
Tru9I	TTAA	3 cut(s)	164, 339, 548
TscAI	CASTG	4 cut(s)	73, 354, 424, 729
TseFI	GTSAC	2 cut(s)	434, 631
TseI	GCWGC	4 cut(s)	104, 365, 656, 761
Tsp45I	GTSAC	2 cut(s)	434, 631
TspDTI	ATGAA	2 cut(s)	32, 60
TspRI	CASTG	4 cut(s)	73, 354, 424, 729
VpaK11BI	GGWCC	1 cut(s)	289
VspI	ATTAAT	1 cut(s)	164
XapI	RAATTY	2 cut(s)	39, 733
XhoI	CTCGAG	1 cut(s)	518
XmaJI	CCTAGG	1 cut(s)	463
XmiI	GTMKAC	1 cut(s)	204
XspI	CTAG	1 cut(s)	464

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.