Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp01

Orthogroup ID

OG0006227

Physical Location & Seq

Genomic Coordinates Forward (+)

28844436 .. 28848405

Gene Structure 3970 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.1G289200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 846 bp

ATGATAAAGATTTTTAATCCCCTAAGTGCTGTTAAACTTGTTGGAAGCATGTCTCTTTCCGGAGGTCACAAAGATAGAGAGTTGAGAGTTCATGAAAGTTTGGATGAGCTTAGCACTGATTTGGCAGACTACATTGCTGAACTATCAGAGGCATCAGTGAAGGAGCGGGGTGTATTTGCAATTGCTTTATCTGGTGGTTCTCTCATTGGCTTAATGGGGAAACTCTGCGAAGCTCCTTATAACAAGACTGTAGACTGGGCCAAATGGTATATATTTTGGGCTGACGAGCGTGTTGTGGCAAAAAACCATGATGATAGCAATTACAAGCTTGCAAAGGATCGCCTTTTGTCTAAGGTCCCTATAATTCCCAGTCATGTGCATTCTATTAATGACACAGTGTCAGCAGAGGAGGCTGCTGATGATTATGAGTTTGTCATTCGTCAGTTGGTGAAATCTCGTGTGATCAGTGTGTCTGATATAAGTGACTGCCCCAAATTTGATCTCATCCTCCTGGGAATGGGGCCTGATGGCCATGTTGCCTCGCTATTCCCTAACCACTCGGCACTTGAGGAGAAAGATGAATGGGTAACTTTTATAACTGATTCCCCCAAGCCTCCACCTGAGCGAATCACATTCACTTTGCCTGTCATCAACTCGGCATCCAATGTAGCTATAGTCGCGACCGGTGACAGCAAAGCAGAGGCTGTGCACCTGGCAGTCGATGACGTGGGATCTGACTCCCCATCAGTGCCGGCAGGGGTTGCCCAGCCACTGAAAGGAAAGTTGGTGTGGTTTTTGGATAAGGCAGCTGCCTCAAAACTTGAGGGTTCCCAATTTTCTGCATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006081 GO:0006098 GO:0006139 GO:0006725 GO:0006732 GO:0006733 GO:0006739 GO:0006753 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0009051 GO:0009117 GO:0009987 GO:0016787 GO:0016788 GO:0017057 GO:0019362 GO:0019637 GO:0019682 GO:0019693 GO:0034641 GO:0044237 GO:0044238 GO:0044281 GO:0044424 GO:0044444 GO:0044464 GO:0046483 GO:0046496 GO:0051156 GO:0051186 GO:0052689 GO:0055086 GO:0071704 GO:0072524 GO:1901135 GO:1901360 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko00030 ko01100 ko01110 ko01120 ko01130 ko01200 map00030 map01100 map01110 map01120 map01130 map01200

Pfam Domains

Protein Families

Glucosamine_iso

Protein Analysis

282

Amino Acids

30.44

Weight (kDa)

5.11

Isoelectric Point (pI)

25.64

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006227)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G13700 AT1G13700 AT1G13700
fragaria_vesca	FvH4_4g29730 FvH4_4g29730 FvH4_4g29730 FvH4_4g29730
malus_domestica	MD13G1060200.v1.1 MD16G1059500.v1.1
prunus_persica	Prupe.1G289200_v2.0.a1 Prupe.1G289200_v2.0.a1
pyrus_communis	pycom13g05360 pycom16g05190
rosa_chinensis	RchiOBHm_Chr4g0437981
rosa_laevigata	RLG00000006396
rosa_multiflora	Rmu_sc0007538.1_g000007
rosa_roxburghii	Rroxscaffold_5G00379140
rosa_rugosa	Rorug04G0306000 Rorug04G0306100 Rorug04G0306100 Rorug04G0306100
rosa_samantha	Rh4AG357700 Rh4BG368600 Rh4CG382700 Rh4DG363500
rosa_wichuraiana	Rw0G011500 Rw0G016170

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	2 cut(s)	240, 596
AccBSI	CCGCTC	1 cut(s)	166
AccI	GTMKAC	1 cut(s)	252
AccII	CGCG	1 cut(s)	680
AccIII	TCCGGA	1 cut(s)	59
AciI	CCGC	1 cut(s)	166
AclWI	GGATC	2 cut(s)	345, 739
AcoI	YGGCCR	1 cut(s)	529
AcsI	RAATTY	1 cut(s)	494
AfiI	CCNNNNNNNGG	2 cut(s)	517, 776
AgeI	ACCGGT	1 cut(s)	683
AhdI	GACNNNNNGTC	1 cut(s)	397
AjiI	CACGTC	1 cut(s)	727
AjnI	CCWGG	2 cut(s)	510, 711
AjuI	GAANNNNNNNTTGG	2 cut(s)	767, 799
AluBI	AGCT	5 cut(s)	109, 233, 328, 671, 809
AluI	AGCT	5 cut(s)	109, 233, 328, 671, 809
Alw21I	GWGCWC	1 cut(s)	711
Alw26I	GTCTC	1 cut(s)	57
Alw44I	GTGCAC	1 cut(s)	707
AlwI	GGATC	2 cut(s)	345, 739
AlwNI	CAGNNNCTG	2 cut(s)	704, 772
Aor13HI	TCCGGA	1 cut(s)	59
AoxI	GGCC	3 cut(s)	258, 521, 529
ApaLI	GTGCAC	1 cut(s)	707
ApeKI	GCWGC	3 cut(s)	413, 806, 809
ApoI	RAATTY	1 cut(s)	494
AseI	ATTAAT	1 cut(s)	387
AsiGI	ACCGGT	1 cut(s)	683
AspS9I	GGNCC	3 cut(s)	258, 355, 521
AsuHPI	GGTGA	2 cut(s)	460, 698
AvaII	GGWCC	1 cut(s)	355
BaeGI	GKGCMC	1 cut(s)	711
BalI	TGGCCA	1 cut(s)	531
BauI	CACGAG	1 cut(s)	456
Bbv12I	GWGCWC	1 cut(s)	711
BbvI	GCAGC	3 cut(s)	400, 796, 818
BccI	CCATC	2 cut(s)	521, 751
BciT130I	CCWGG	2 cut(s)	512, 713
BclI	TGATCA	1 cut(s)	462
BcoDI	GTCTC	1 cut(s)	57
BfmI	CTRYAG	2 cut(s)	249, 672
BisI	GCNGC	3 cut(s)	414, 807, 810
BlpI	GCTNAGC	1 cut(s)	110
BlsI	GCNGC	3 cut(s)	415, 808, 811
Bme1390I	CCNGG	2 cut(s)	512, 713
Bme18I	GGWCC	1 cut(s)	355
BmeRI	GACNNNNNGTC	1 cut(s)	397
BmgBI	CACGTC	1 cut(s)	727
BmgT120I	GGNCC	3 cut(s)	258, 355, 521
BmiI	GGNNCC	3 cut(s)	357, 522, 829
BmrFI	CCNGG	2 cut(s)	512, 713
BmrI	ACTGGG	2 cut(s)	265, 363
BmsI	GCATC	2 cut(s)	161, 668
BmuI	ACTGGG	2 cut(s)	265, 363
Bpu10I	CCTNAGC	1 cut(s)	621
Bpu1102I	GCTNAGC	1 cut(s)	110
BpuEI	CTTGAG	2 cut(s)	587, 842
BsaJI	CCNNGG	1 cut(s)	511
BsaWI	WCCGGW	2 cut(s)	59, 683
Bsc4I	CCNNNNNNNGG	2 cut(s)	517, 776
Bse118I	RCCGGY	2 cut(s)	683, 751
Bse1I	ACTGG	2 cut(s)	260, 369
Bse3DI	GCAATG	1 cut(s)	132
BseAI	TCCGGA	1 cut(s)	59
BseBI	CCWGG	2 cut(s)	512, 713
BseDI	CCNNGG	1 cut(s)	511
BseGI	GGATG	3 cut(s)	109, 504, 659
BseLI	CCNNNNNNNGG	2 cut(s)	517, 776
BseMI	GCAATG	1 cut(s)	132
BseMII	CTCAG	1 cut(s)	612
BseNI	ACTGG	2 cut(s)	260, 369
BseRI	GAGGAG	2 cut(s)	422, 584
BseSI	GKGCMC	1 cut(s)	711
BseXI	GCAGC	3 cut(s)	400, 796, 818
BseYI	CCCAGC	1 cut(s)	765
Bsh1236I	CGCG	1 cut(s)	680
Bsh1285I	CGRYCG	1 cut(s)	684
BshFI	GGCC	3 cut(s)	260, 523, 531
BshTI	ACCGGT	1 cut(s)	683
BsiEI	CGRYCG	1 cut(s)	684
BsiHKAI	GWGCWC	1 cut(s)	711
BsiSI	CCGG	3 cut(s)	60, 684, 752
BslFI	GGGAC	1 cut(s)	341
BslI	CCNNNNNNNGG	2 cut(s)	517, 776
BsmAI	GTCTC	1 cut(s)	57
BsmFI	GGGAC	1 cut(s)	341
BsmI	GAATGC	1 cut(s)	379
BsnI	GGCC	3 cut(s)	260, 523, 531
Bsp1286I	GDGCHC	1 cut(s)	711
Bsp13I	TCCGGA	1 cut(s)	59
Bsp143I	GATC	4 cut(s)	337, 462, 499, 731
Bsp1720I	GCTNAGC	1 cut(s)	110
Bsp68I	TCGCGA	1 cut(s)	680
BspACI	CCGC	1 cut(s)	166
BspANI	GGCC	3 cut(s)	260, 523, 531
BspCNI	CTCAG	1 cut(s)	613
BspEI	TCCGGA	1 cut(s)	59
BspFNI	CGCG	1 cut(s)	680
BspHI	TCATGA	1 cut(s)	91
BspLI	GGNNCC	3 cut(s)	357, 522, 829
BspPI	GGATC	2 cut(s)	345, 739
BsrBI	CCGCTC	1 cut(s)	166
BsrDI	GCAATG	1 cut(s)	132
BsrFI	RCCGGY	2 cut(s)	683, 751
BsrI	ACTGG	2 cut(s)	260, 369
BssAI	RCCGGY	2 cut(s)	683, 751
BssECI	CCNNGG	1 cut(s)	511
BssMI	GATC	4 cut(s)	337, 462, 499, 731
BssSI	CACGAG	1 cut(s)	456
Bst2BI	CACGAG	1 cut(s)	456
Bst2UI	CCWGG	2 cut(s)	512, 713
Bst4CI	ACNGT	2 cut(s)	250, 397
BstAPI	GCANNNNNTGC	1 cut(s)	761
BstC8I	GCNNGC	2 cut(s)	330, 753
BstDEI	CTNAG	4 cut(s)	23, 110, 351, 621
BstF5I	GGATG	3 cut(s)	109, 504, 659
BstFNI	CGCG	1 cut(s)	680
BstKTI	GATC	4 cut(s)	340, 465, 502, 734
BstMAI	GTCTC	1 cut(s)	57
BstMBI	GATC	4 cut(s)	337, 462, 499, 731
BstMCI	CGRYCG	1 cut(s)	684
BstMWI	GCNNNNNNNGC	3 cut(s)	410, 677, 761
BstNI	CCWGG	2 cut(s)	512, 713
BstNSI	RCATGY	1 cut(s)	52
BstSCI	CCNGG	2 cut(s)	510, 711
BstSFI	CTRYAG	2 cut(s)	249, 672
BstSLI	GKGCMC	1 cut(s)	711
BstUI	CGCG	1 cut(s)	680
BstV1I	GCAGC	3 cut(s)	400, 796, 818
BstX2I	RGATCY	1 cut(s)	731
BstYI	RGATCY	1 cut(s)	731
BsuRI	GGCC	3 cut(s)	260, 523, 531
BtrI	CACGTC	1 cut(s)	727
BtsCI	GGATG	3 cut(s)	109, 504, 659
BtsIMutI	CAGTG	6 cut(s)	114, 162, 402, 472, 753, 770
BtuMI	TCGCGA	1 cut(s)	680
Cac8I	GCNNGC	2 cut(s)	330, 753
CaiI	CAGNNNCTG	2 cut(s)	704, 772
CciI	TCATGA	1 cut(s)	91
Cfr10I	RCCGGY	2 cut(s)	683, 751
Cfr13I	GGNCC	3 cut(s)	258, 355, 521
CspAI	ACCGGT	1 cut(s)	683
CviAII	CATG	5 cut(s)	49, 92, 308, 374, 533
DdeI	CTNAG	4 cut(s)	23, 110, 351, 621
DpnI	GATC	4 cut(s)	339, 464, 501, 733
DpnII	GATC	4 cut(s)	337, 462, 499, 731
DriI	GACNNNNNGTC	1 cut(s)	397
EaeI	YGGCCR	1 cut(s)	529
Eam1105I	GACNNNNNGTC	1 cut(s)	397
Eco47I	GGWCC	1 cut(s)	355
EcoO109I	RGGNCCY	2 cut(s)	355, 521
EcoRII	CCWGG	2 cut(s)	510, 711
FaeI	CATG	5 cut(s)	52, 95, 311, 377, 536
FaqI	GGGAC	1 cut(s)	341
FatI	CATG	5 cut(s)	48, 91, 307, 373, 532
FauI	CCCGC	1 cut(s)	159
FbaI	TGATCA	1 cut(s)	462
FblI	GTMKAC	1 cut(s)	252
Fnu4HI	GCNGC	3 cut(s)	414, 807, 810
FokI	GGATG	3 cut(s)	116, 491, 646
Fsp4HI	GCNGC	3 cut(s)	414, 807, 810
GluI	GCNGC	3 cut(s)	414, 807, 810
GsaI	CCCAGC	1 cut(s)	769
HaeIII	GGCC	3 cut(s)	260, 523, 531
HapII	CCGG	3 cut(s)	60, 684, 752
Hin1II	CATG	5 cut(s)	52, 95, 311, 377, 536
HindIII	AAGCTT	1 cut(s)	326
HinfI	GANTC	3 cut(s)	602, 627, 737
HpaII	CCGG	3 cut(s)	60, 684, 752
HphI	GGTGA	2 cut(s)	460, 698
Hpy166II	GTNNAC	2 cut(s)	253, 709
Hpy188I	TCNGA	3 cut(s)	148, 475, 736
Hpy188III	TCNNGA	3 cut(s)	60, 92, 679
Hpy8I	GTNNAC	2 cut(s)	253, 709
HpyAV	CCTTC	1 cut(s)	154
HpyCH4III	ACNGT	2 cut(s)	250, 397
HpyCH4IV	ACGT	1 cut(s)	726
HpyCH4V	TGCA	5 cut(s)	179, 332, 379, 709, 842
HpyF10VI	GCNNNNNNNGC	3 cut(s)	410, 677, 761
HpyF3I	CTNAG	4 cut(s)	23, 110, 351, 621
HpySE526I	ACGT	1 cut(s)	726
Hsp92II	CATG	5 cut(s)	52, 95, 311, 377, 536
Kpn2I	TCCGGA	1 cut(s)	59
KroI	GCCGGC	1 cut(s)	751
KroNI	GCCGGC	1 cut(s)	753
Ksp22I	TGATCA	1 cut(s)	462
Kzo9I	GATC	4 cut(s)	337, 462, 499, 731
LmnI	GCTCC	2 cut(s)	163, 238
Lsp1109I	GCAGC	3 cut(s)	400, 796, 818
LweI	GCATC	2 cut(s)	161, 668
MaeII	ACGT	1 cut(s)	726
MaeIII	GTNAC	4 cut(s)	65, 482, 586, 686
MalI	GATC	4 cut(s)	339, 464, 501, 733
MbiI	CCGCTC	1 cut(s)	166
MboI	GATC	4 cut(s)	337, 462, 499, 731
MfeI	CAATTG	1 cut(s)	180
MflI	RGATCY	1 cut(s)	731
MhlI	GDGCHC	1 cut(s)	711
MlsI	TGGCCA	1 cut(s)	531
MluCI	AATT	5 cut(s)	180, 319, 363, 494, 833
MluNI	TGGCCA	1 cut(s)	531
MlyI	GAGTC	1 cut(s)	731
MmeI	TCCRAC	1 cut(s)	22
Mox20I	TGGCCA	1 cut(s)	531
MroI	TCCGGA	1 cut(s)	59
MroNI	GCCGGC	1 cut(s)	751
MscI	TGGCCA	1 cut(s)	531
MseI	TTAA	4 cut(s)	15, 33, 212, 387
Msp20I	TGGCCA	1 cut(s)	531
MspA1I	CMGCKG	1 cut(s)	809
MspI	CCGG	3 cut(s)	60, 684, 752
MspR9I	CCNGG	2 cut(s)	512, 713
MunI	CAATTG	1 cut(s)	180
Mva1269I	GAATGC	1 cut(s)	379
MvaI	CCWGG	2 cut(s)	512, 713
MvnI	CGCG	1 cut(s)	680
MwoI	GCNNNNNNNGC	3 cut(s)	410, 677, 761
NaeI	GCCGGC	1 cut(s)	753
NdeII	GATC	4 cut(s)	337, 462, 499, 731
NgoMIV	GCCGGC	1 cut(s)	751
NlaIII	CATG	5 cut(s)	52, 95, 311, 377, 536
NlaIV	GGNNCC	3 cut(s)	357, 522, 829
NmeAIII	GCCGAG	2 cut(s)	539, 635
NmuCI	GTSAC	3 cut(s)	65, 482, 686
NruI	TCGCGA	1 cut(s)	680
NspI	RCATGY	1 cut(s)	52
PagI	TCATGA	1 cut(s)	91
PctI	GAATGC	1 cut(s)	379
PdiI	GCCGGC	1 cut(s)	753
PfeI	GAWTC	2 cut(s)	602, 627
PinAI	ACCGGT	1 cut(s)	683
PkrI	GCNGC	3 cut(s)	415, 808, 811
PleI	GAGTC	1 cut(s)	731
PpsI	GAGTC	1 cut(s)	731
PpuMI	RGGWCCY	1 cut(s)	355
PshBI	ATTAAT	1 cut(s)	387
PsiI	TTATAA	2 cut(s)	240, 596
Psp5II	RGGWCCY	1 cut(s)	355
Psp6I	CCWGG	2 cut(s)	510, 711
PspFI	CCCAGC	1 cut(s)	765
PspGI	CCWGG	2 cut(s)	510, 711
PspN4I	GGNNCC	3 cut(s)	357, 522, 829
PspPI	GGNCC	3 cut(s)	258, 355, 521
PspPPI	RGGWCCY	1 cut(s)	355
PstNI	CAGNNNCTG	2 cut(s)	704, 772
PsuI	RGATCY	1 cut(s)	731
PvuII	CAGCTG	1 cut(s)	809
RruI	TCGCGA	1 cut(s)	680
SaqAI	TTAA	4 cut(s)	15, 33, 212, 387
SatI	GCNGC	3 cut(s)	414, 807, 810
Sau3AI	GATC	4 cut(s)	337, 462, 499, 731
Sau96I	GGNCC	3 cut(s)	258, 355, 521
SchI	GAGTC	1 cut(s)	731
ScrFI	CCNGG	2 cut(s)	512, 713
SduI	GDGCHC	1 cut(s)	711
SfaNI	GCATC	2 cut(s)	161, 668
SfcI	CTRYAG	2 cut(s)	249, 672
SinI	GGWCC	1 cut(s)	355
SmlI	CTYRAG	2 cut(s)	566, 821
SmoI	CTYRAG	2 cut(s)	566, 821
Sse9I	AATT	5 cut(s)	180, 319, 363, 494, 833
SsiI	CCGC	1 cut(s)	166
StyD4I	CCNGG	2 cut(s)	510, 711
TaaI	ACNGT	2 cut(s)	250, 397
TaiI	ACGT	1 cut(s)	729
TaqI	TCGA	1 cut(s)	720
TasI	AATT	5 cut(s)	180, 319, 363, 494, 833
TfiI	GAWTC	2 cut(s)	602, 627
Tru1I	TTAA	4 cut(s)	15, 33, 212, 387
Tru9I	TTAA	4 cut(s)	15, 33, 212, 387
TscAI	CASTG	6 cut(s)	121, 162, 402, 472, 753, 777
TseFI	GTSAC	3 cut(s)	65, 482, 686
TseI	GCWGC	3 cut(s)	413, 806, 809
Tsp45I	GTSAC	3 cut(s)	65, 482, 686
TspDTI	ATGAA	3 cut(s)	80, 108, 594
TspRI	CASTG	6 cut(s)	121, 162, 402, 472, 753, 777
VneI	GTGCAC	1 cut(s)	707
VpaK11BI	GGWCC	1 cut(s)	355
VspI	ATTAAT	1 cut(s)	387
XapI	RAATTY	1 cut(s)	494
XceI	RCATGY	1 cut(s)	52
XmiI	GTMKAC	1 cut(s)	252

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.