Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0006227

Physical Location & Seq

Genomic Coordinates Reverse (-)

4694372 .. 4696023

Gene Structure 1652 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT1G13700.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 807 bp

ATGGCACTTACTTGGACTCATAAAGACAGGGGAGAAATTAGGGTTCATGAGAATTTGGAGGAACTAAGCATAGACTTGGTTGATTATATAGCTGAGATATCAGAAGCATCAATTAAAGAACATGGTGCTTTCTGCATTGTGTTATCAGGAGGCTCTCTCATTAGCTTCATGGGAAAATTGATCGAGCCGCCTTACGACAAGATTGTAGATTGGGCGAAATGGTATGTTTTCTGGGCGGATGAGCGTGTGGTAGCTAAGAATCATGACGATAGCAACTACAAGCTAGCCAAAGATAATTTACTCTCCAAGGTAAATGTGTTTCCGAGACATATATGTTCCATTAACGACACAGTTTCAGCGGAGGAAGCTGCAACAGAGTATGAATTCGCCATCAGACAGATGGTGAGATCACGAACCGTGGCTGCGTCAGACAACAGTGACAGTCCCAGGTTTGATCTGATCTTGCTTGGGATGGGCTCAGATGGACATGTAGCCTCACTCTTCCCGAACCACCCAGCACTTGAGGTGAAGGACGATTGGGTCACATTCCTAACCGACTCTCATAAACCGCCACCAGAGAGAATCACATTCACTTTGCCCGTCATCAACTCAGCTGCTAACGTTGTCGTAGTAGCAACCGGCGAATCCAAAGCCAATGCTATCCACTTAGCAATCGATGATTTGCCCTTACCAGACAGCTCTCTGTCTCTGCCTGCAAGGCTAGTCCACCCGAGCAATGGGAATCTGATTTGGTTTATGGATAAACAAGCGGGGTCTAAGCTTGACAGGTTTAAATTTTCCGAGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006081 GO:0006098 GO:0006139 GO:0006725 GO:0006732 GO:0006733 GO:0006739 GO:0006753 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0009051 GO:0009117 GO:0009987 GO:0016787 GO:0016788 GO:0017057 GO:0019362 GO:0019637 GO:0019682 GO:0019693 GO:0034641 GO:0044237 GO:0044238 GO:0044281 GO:0044424 GO:0044444 GO:0044464 GO:0046483 GO:0046496 GO:0051156 GO:0051186 GO:0052689 GO:0055086 GO:0071704 GO:0072524 GO:1901135 GO:1901360 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko00030 ko01100 ko01110 ko01120 ko01130 ko01200 map00030 map01100 map01110 map01120 map01130 map01200

Pfam Domains

Protein Families

Glucosamine_iso

Protein Analysis

268

Amino Acids

29.89

Weight (kDa)

5.19

Isoelectric Point (pI)

32.47

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Glucosamine_iso	PF01182	19 - 251	4.8e-70	Glucosamine-6-phosphate isomerases/6-phosphogluconolactonase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0006227)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G13700 AT1G13700 AT1G13700
fragaria_vesca	FvH4_4g29730 FvH4_4g29730 FvH4_4g29730 FvH4_4g29730
malus_domestica	MD13G1060200.v1.1 MD16G1059500.v1.1
prunus_persica	Prupe.1G289200_v2.0.a1 Prupe.1G289200_v2.0.a1
pyrus_communis	pycom13g05360 pycom16g05190
rosa_chinensis	RchiOBHm_Chr4g0437981
rosa_laevigata	RLG00000006396
rosa_multiflora	Rmu_sc0007538.1_g000007
rosa_roxburghii	Rroxscaffold_5G00379140
rosa_rugosa	Rorug04G0306000 Rorug04G0306100 Rorug04G0306100 Rorug04G0306100
rosa_samantha	Rh4AG357700 Rh4BG368600 Rh4CG382700 Rh4DG363500
rosa_wichuraiana	Rw0G011500 Rw0G016170

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	539
AciI	CCGC	5 cut(s)	188, 236, 359, 569, 770
AclI	AACGTT	1 cut(s)	621
AcsI	RAATTY	3 cut(s)	52, 383, 794
AfiI	CCNNNNNNNGG	1 cut(s)	737
AflIII	ACRYGT	1 cut(s)	487
AjnI	CCWGG	1 cut(s)	446
AluBI	AGCT	8 cut(s)	92, 165, 254, 283, 368, 614, 699, 781
AluI	AGCT	8 cut(s)	92, 165, 254, 283, 368, 614, 699, 781
Alw26I	GTCTC	2 cut(s)	319, 711
Ama87I	CYCGRG	1 cut(s)	730
ApeKI	GCWGC	3 cut(s)	368, 422, 614
ApoI	RAATTY	3 cut(s)	52, 383, 794
AsuHPI	GGTGA	2 cut(s)	415, 538
AsuNHI	GCTAGC	1 cut(s)	283
AvaI	CYCGRG	1 cut(s)	730
BanII	GRGCYC	1 cut(s)	479
BbvI	GCAGC	3 cut(s)	355, 409, 601
BccI	CCATC	4 cut(s)	394, 398, 466, 476
BciT130I	CCWGG	1 cut(s)	448
BcoDI	GTCTC	2 cut(s)	319, 711
BfaI	CTAG	2 cut(s)	284, 722
BglI	GCCNNNNNGGC	1 cut(s)	718
BisI	GCNGC	4 cut(s)	188, 369, 423, 615
BlsI	GCNGC	4 cut(s)	189, 370, 424, 616
Bme1390I	CCNGG	1 cut(s)	448
BmeT110I	CYCGRG	1 cut(s)	730
BmrFI	CCNGG	1 cut(s)	448
BmsI	GCATC	1 cut(s)	116
BmtI	GCTAGC	1 cut(s)	287
BplI	GAGNNNNNCTC	2 cut(s)	141, 173
BpuEI	CTTGAG	1 cut(s)	542
Bsa29I	ATCGAT	1 cut(s)	675
BsaJI	CCNNGG	3 cut(s)	306, 417, 446
Bsc4I	CCNNNNNNNGG	1 cut(s)	737
Bse118I	RCCGGY	1 cut(s)	638
Bse3DI	GCAATG	1 cut(s)	742
BseBI	CCWGG	1 cut(s)	448
BseCI	ATCGAT	1 cut(s)	675
BseDI	CCNNGG	3 cut(s)	306, 417, 446
BseGI	GGATG	2 cut(s)	244, 477
BseLI	CCNNNNNNNGG	1 cut(s)	737
BseMI	GCAATG	1 cut(s)	742
BseMII	CTCAG	3 cut(s)	84, 492, 624
BseXI	GCAGC	3 cut(s)	355, 409, 601
BseYI	CCCAGC	1 cut(s)	514
BshVI	ATCGAT	1 cut(s)	675
BsiHKCI	CYCGRG	1 cut(s)	730
BsiSI	CCGG	1 cut(s)	639
BslFI	GGGAC	1 cut(s)	429
BslI	CCNNNNNNNGG	1 cut(s)	737
BsmAI	GTCTC	2 cut(s)	319, 711
BsmFI	GGGAC	1 cut(s)	429
BsoBI	CYCGRG	1 cut(s)	730
Bsp1286I	GDGCHC	1 cut(s)	479
Bsp143I	GATC	4 cut(s)	180, 407, 454, 459
BspACI	CCGC	5 cut(s)	188, 236, 359, 569, 770
BspCNI	CTCAG	3 cut(s)	85, 491, 623
BspDI	ATCGAT	1 cut(s)	675
BspHI	TCATGA	2 cut(s)	46, 262
BspOI	GCTAGC	1 cut(s)	287
BsrDI	GCAATG	1 cut(s)	742
BsrFI	RCCGGY	1 cut(s)	638
BssAI	RCCGGY	1 cut(s)	638
BssECI	CCNNGG	3 cut(s)	306, 417, 446
BssMI	GATC	4 cut(s)	180, 407, 454, 459
BssT1I	CCWWGG	1 cut(s)	306
Bst2UI	CCWGG	1 cut(s)	448
Bst4CI	ACNGT	4 cut(s)	352, 418, 437, 443
Bst6I	CTCTTC	1 cut(s)	506
BstC8I	GCNNGC	2 cut(s)	285, 714
BstDEI	CTNAG	7 cut(s)	65, 93, 255, 478, 610, 667, 777
BstDSI	CCRYGG	1 cut(s)	417
BstF5I	GGATG	2 cut(s)	244, 477
BstKTI	GATC	4 cut(s)	183, 410, 457, 462
BstMAI	GTCTC	2 cut(s)	319, 711
BstMBI	GATC	4 cut(s)	180, 407, 454, 459
BstMWI	GCNNNNNNNGC	2 cut(s)	365, 718
BstNI	CCWGG	1 cut(s)	448
BstNSI	RCATGY	1 cut(s)	491
BstSCI	CCNGG	1 cut(s)	446
BstV1I	GCAGC	3 cut(s)	355, 409, 601
Bsu15I	ATCGAT	1 cut(s)	675
BsuTUI	ATCGAT	1 cut(s)	675
BtgI	CCRYGG	1 cut(s)	417
BtsCI	GGATG	2 cut(s)	244, 477
BtsIMutI	CAGTG	1 cut(s)	442
Cac8I	GCNNGC	2 cut(s)	285, 714
CciI	TCATGA	2 cut(s)	46, 262
Cfr10I	RCCGGY	1 cut(s)	638
ClaI	ATCGAT	1 cut(s)	675
CseI	GACGC	1 cut(s)	414
CviAII	CATG	5 cut(s)	47, 122, 169, 263, 488
DdeI	CTNAG	7 cut(s)	65, 93, 255, 478, 610, 667, 777
DpnI	GATC	4 cut(s)	182, 409, 456, 461
DpnII	GATC	4 cut(s)	180, 407, 454, 459
DraI	TTTAAA	1 cut(s)	793
DrdI	GACNNNNNNGTC	1 cut(s)	539
DseDI	GACNNNNNNGTC	1 cut(s)	539
Eam1104I	CTCTTC	1 cut(s)	506
EarI	CTCTTC	1 cut(s)	506
EciI	GGCGGA	1 cut(s)	251
Eco130I	CCWWGG	1 cut(s)	306
Eco24I	GRGCYC	1 cut(s)	479
Eco32I	GATATC	1 cut(s)	99
Eco88I	CYCGRG	1 cut(s)	730
EcoRI	GAATTC	1 cut(s)	383
EcoRII	CCWGG	1 cut(s)	446
EcoRV	GATATC	1 cut(s)	99
EcoT14I	CCWWGG	1 cut(s)	306
EcoT38I	GRGCYC	1 cut(s)	479
ErhI	CCWWGG	1 cut(s)	306
FaeI	CATG	5 cut(s)	50, 125, 172, 266, 491
FaqI	GGGAC	1 cut(s)	429
FatI	CATG	5 cut(s)	46, 121, 168, 262, 487
FauI	CCCGC	1 cut(s)	763
Fnu4HI	GCNGC	4 cut(s)	188, 369, 423, 615
FokI	GGATG	2 cut(s)	251, 484
FriOI	GRGCYC	1 cut(s)	479
Fsp4HI	GCNGC	4 cut(s)	188, 369, 423, 615
FspBI	CTAG	2 cut(s)	284, 722
GluI	GCNGC	4 cut(s)	188, 369, 423, 615
GsaI	CCCAGC	1 cut(s)	518
HapII	CCGG	1 cut(s)	639
HgaI	GACGC	1 cut(s)	414
Hin1II	CATG	5 cut(s)	50, 125, 172, 266, 491
HindIII	AAGCTT	1 cut(s)	779
HinfI	GANTC	6 cut(s)	16, 259, 557, 582, 644, 742
HpaII	CCGG	1 cut(s)	639
HphI	GGTGA	2 cut(s)	415, 538
Hpy166II	GTNNAC	1 cut(s)	727
Hpy188I	TCNGA	8 cut(s)	103, 324, 395, 430, 459, 481, 747, 802
Hpy188III	TCNNGA	5 cut(s)	47, 147, 263, 411, 505
Hpy8I	GTNNAC	1 cut(s)	727
HpyAV	CCTTC	1 cut(s)	523
HpyCH4III	ACNGT	4 cut(s)	352, 418, 437, 443
HpyCH4IV	ACGT	1 cut(s)	621
HpyCH4V	TGCA	3 cut(s)	135, 371, 716
HpyF10VI	GCNNNNNNNGC	2 cut(s)	365, 718
HpyF3I	CTNAG	7 cut(s)	65, 93, 255, 478, 610, 667, 777
HpySE526I	ACGT	1 cut(s)	621
Hsp92II	CATG	5 cut(s)	50, 125, 172, 266, 491
Kzo9I	GATC	4 cut(s)	180, 407, 454, 459
Lsp1109I	GCAGC	3 cut(s)	355, 409, 601
LweI	GCATC	1 cut(s)	116
MaeI	CTAG	2 cut(s)	284, 722
MaeII	ACGT	1 cut(s)	621
MaeIII	GTNAC	2 cut(s)	437, 541
MalI	GATC	4 cut(s)	182, 409, 456, 461
MboI	GATC	4 cut(s)	180, 407, 454, 459
MboII	GAAGA	1 cut(s)	493
MhlI	GDGCHC	1 cut(s)	479
MluCI	AATT	7 cut(s)	36, 52, 111, 176, 295, 383, 794
MlyI	GAGTC	2 cut(s)	10, 551
MnlI	CCTC	5 cut(s)	52, 143, 355, 505, 517
MseI	TTAA	3 cut(s)	114, 342, 792
MspA1I	CMGCKG	2 cut(s)	359, 614
MspI	CCGG	1 cut(s)	639
MspR9I	CCNGG	1 cut(s)	448
MvaI	CCWGG	1 cut(s)	448
MwoI	GCNNNNNNNGC	2 cut(s)	365, 718
NdeII	GATC	4 cut(s)	180, 407, 454, 459
NheI	GCTAGC	1 cut(s)	283
NlaIII	CATG	5 cut(s)	50, 125, 172, 266, 491
NmuCI	GTSAC	2 cut(s)	437, 541
NspI	RCATGY	1 cut(s)	491
PagI	TCATGA	2 cut(s)	46, 262
PciI	ACATGT	1 cut(s)	487
PfeI	GAWTC	4 cut(s)	259, 582, 644, 742
PkrI	GCNGC	4 cut(s)	189, 370, 424, 616
PleI	GAGTC	2 cut(s)	10, 551
PpsI	GAGTC	2 cut(s)	10, 551
PscI	ACATGT	1 cut(s)	487
Psp1406I	AACGTT	1 cut(s)	621
Psp6I	CCWGG	1 cut(s)	446
PspFI	CCCAGC	1 cut(s)	514
PspGI	CCWGG	1 cut(s)	446
PvuII	CAGCTG	1 cut(s)	614
SaqAI	TTAA	3 cut(s)	114, 342, 792
SatI	GCNGC	4 cut(s)	188, 369, 423, 615
Sau3AI	GATC	4 cut(s)	180, 407, 454, 459
SchI	GAGTC	2 cut(s)	10, 551
ScrFI	CCNGG	1 cut(s)	448
SduI	GDGCHC	1 cut(s)	479
SfaNI	GCATC	1 cut(s)	116
SmlI	CTYRAG	1 cut(s)	521
SmoI	CTYRAG	1 cut(s)	521
Sse9I	AATT	7 cut(s)	36, 52, 111, 176, 295, 383, 794
SsiI	CCGC	5 cut(s)	188, 236, 359, 569, 770
SspMI	CTAG	2 cut(s)	284, 722
StyD4I	CCNGG	1 cut(s)	446
StyI	CCWWGG	1 cut(s)	306
TaaI	ACNGT	4 cut(s)	352, 418, 437, 443
TaiI	ACGT	1 cut(s)	624
TaqI	TCGA	2 cut(s)	183, 675
TasI	AATT	7 cut(s)	36, 52, 111, 176, 295, 383, 794
TauI	GCSGC	1 cut(s)	190
TfiI	GAWTC	4 cut(s)	259, 582, 644, 742
Tru1I	TTAA	3 cut(s)	114, 342, 792
Tru9I	TTAA	3 cut(s)	114, 342, 792
TscAI	CASTG	1 cut(s)	442
TseFI	GTSAC	2 cut(s)	437, 541
TseI	GCWGC	3 cut(s)	368, 422, 614
Tsp45I	GTSAC	2 cut(s)	437, 541
TspDTI	ATGAA	3 cut(s)	35, 157, 396
TspRI	CASTG	1 cut(s)	442
XapI	RAATTY	3 cut(s)	52, 383, 794
XceI	RCATGY	1 cut(s)	491
XcmI	CCANNNNNNNNNTGG	2 cut(s)	397, 734
XspI	CTAG	2 cut(s)	284, 722

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.