FvH4_4g32690

EamA-like transporter family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb4
OG0016838
Physical Location & Seq
Forward (+)
31260593 .. 31263218
2626 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_4g32690.t1

Sequence Viewer

Length: 1368 bp
ATGGCTGCCCAATCGCCGCGCGGGTGGTCATGGAGTTCATCCACCTACTCCACCACCGCTGCCAAGTGCTCTTCTTCCACCTCGTCGAATCTCTCTTCGTTTTATATAAAACGACGTCGCTTCACCGCTTGCTCTTCCTCTTCTAAATCTTCCGGTAGCTCCGGCGAGAAACCCGGGCCGAAAAAGCCGGCGAAATTGGATTTTACAGCCCCCGGTCCAACCGCATTAGTGAAAGTCTCAAAGGGAAAGGGATCCACAAGTGAAAAGACGATTACAGCCCTGAGCTTCAAGCCTGGGAAGCGATCTCTATGGAAGAGGATATTCTTCGCCTCCAAGAAAGTTAGGAGCATTCTTCTGCTGAATGTGATCACTGTAGTCTATGCAAGTAACTTCTCGATTGTGAAAGAGGTGGAGTCTGTGATCGACCCGGCGGCGTTTACGGTGGTGCGGTTTGCTATGTCAGCTGTCCCATTCATCCCATTTGTCATCCGAGCAAGAGGTGATGTGGAAACTCGTAATGCAGGGATTGAGTTGGGGTTCTGGGTTAGTTTAGGGTATCTTATGCAGGCATTGGGACTGCTAACATCGGATGCTGGTCGCGCGTCGTTTCTTTCTATGTTCACTGTGATTATCGTTCCCTTGCTTGATGGTATGTTAGGAGCAATAGTCCCTGCTCGTGTCTGGTTTGGTGCCTTCATGTCTATTGTAGGAGTTGGGCTGCTGGAGTCCAGTGGATCTCCCCCTAGTGTTGGAGATTTGCTGAACTTCTTGAGCGCGGTGTTTTTTGGGGTTCATATGCTTAGAACAGAGCATATATCAAGAAACACAAAGAAAGAAAACTTCTTGCCTCTGCTTGGATATGAGATATGCGTTGTTGCTTTCTTATCAACAATATGGTACGTCATTGGGGCATGGTCTGGTGGTGGCCTCCACGACTTTAACCCATCATTGTGGACATGGGAGATGTTCAGGGAGTGGATGGTTGTGTTTCCATGGATACCTGCACTGTACACAGGCATATTCTCCACTGTTTTATGCTTATGGGTAGAGATGGCCGCAATGTGTGACGTATCAGCCACAGAAACAGCAATAATTTATGGTTTGGAACCTGTCTGGGGTGCTGGTTTTGCATGGTTTCTCCTTGGCGAAAGATGGGGTTCTACTGGCTGGATTGGTGCTGCTCTTGTGCTTGGTGGAAGCTTAACAGTTCAGATATTTGGATCAACATCTCCCGCGGAGCCTTCAAAAGATGAATTGAAAGCTAAGAGACTCACTTTCCCAGTGGTTTCAGATAAACACAATGGCTTGTCTGCCTCACCCGTTGTAGTGAGTTCCAGAAAGGATACACCTGATCTGCGGAATAAGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
EamA

Protein Analysis

456

Amino Acids

49.32

Weight (kDa)

9.63

Isoelectric Point (pI)

43.63

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
EamA PF00892 117 - 240 1.3e-06 EamA-like transporter family
EamA PF00892 251 - 401 3.4e-12 EamA-like transporter family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0016838)

Species Orthologous Gene IDs
fragaria_vesca FvH4_4g32690
malus_domestica MD16G1026300.v1.1
prunus_persica Prupe.1G327200_v2.0.a1
pyrus_communis pycom16g02220
rosa_chinensis RchiOBHm_Chr4g0441611
rosa_laevigata RLG00000006081
rosa_multiflora Rmu_sc0000353.1_g000024
rosa_roxburghii Rroxscaffold_5G00382440
rosa_rugosa Rorug04G0334900
rosa_samantha Rh4AG386400 Rh4BG400600 Rh4CG415600 Rh4DG393300
rosa_wichuraiana Rw4G033380

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 118
Acc36I ACCTGC 1 cut(s) 1009
AccB1I GGYRCC 1 cut(s) 689
AccII CGCG 6 cut(s) 19, 21, 600, 602, 776, 1235
AclWI GGATC 4 cut(s) 246, 259, 742, 1228
AcoI YGGCCR 1 cut(s) 1053
AcyI GRCGYC 1 cut(s) 115
AfaI GTAC 2 cut(s) 899, 1010
AfiI CCNNNNNNNGG 3 cut(s) 749, 854, 1115
AgsI TTSAA 3 cut(s) 289, 1245, 1258
AjnI CCWGG 1 cut(s) 292
AluBI AGCT 5 cut(s) 159, 285, 464, 1200, 1262
AluI AGCT 5 cut(s) 159, 285, 464, 1200, 1262
Alw21I GWGCWC 1 cut(s) 71
Alw26I GTCTC 2 cut(s) 241, 1261
AlwI GGATC 4 cut(s) 246, 259, 742, 1228
Ama87I CYCGRG 1 cut(s) 173
AoxI GGCC 3 cut(s) 176, 925, 1053
ApeKI GCWGC 4 cut(s) 5, 59, 718, 1178
AspLEI GCGC 3 cut(s) 21, 602, 776
AspS9I GGNCC 2 cut(s) 176, 215
AsuC2I CCSGG 4 cut(s) 174, 175, 213, 428
AsuHPI GGTGA 3 cut(s) 115, 512, 1308
AvaI CYCGRG 1 cut(s) 173
AvaII GGWCC 1 cut(s) 215
BamHI GGATCC 1 cut(s) 251
BanI GGYRCC 1 cut(s) 689
BauI CACGAG 1 cut(s) 675
Bbv12I GWGCWC 1 cut(s) 71
BbvI GCAGC 3 cut(s) 46, 705, 1165
BccI CCATC 5 cut(s) 641, 952, 973, 1045, 1146
BciT130I CCWGG 1 cut(s) 294
BciVI GTATCC 2 cut(s) 990, 1336
BclI TGATCA 1 cut(s) 366
BcnI CCSGG 4 cut(s) 174, 175, 213, 428
BcoDI GTCTC 2 cut(s) 241, 1261
BfaI CTAG 1 cut(s) 744
BfmI CTRYAG 1 cut(s) 372
BfuAI ACCTGC 1 cut(s) 1009
BfuI GTATCC 2 cut(s) 990, 1336
BisI GCNGC 7 cut(s) 6, 17, 60, 432, 719, 1056, 1179
BlsI GCNGC 7 cut(s) 7, 18, 61, 433, 720, 1057, 1180
Bme1390I CCNGG 5 cut(s) 174, 175, 213, 294, 428
Bme18I GGWCC 1 cut(s) 215
BmeT110I CYCGRG 1 cut(s) 173
BmgT120I GGNCC 2 cut(s) 176, 215
BmiI GGNNCC 4 cut(s) 253, 691, 1107, 1239
BmrFI CCNGG 5 cut(s) 174, 175, 213, 294, 428
BmrI ACTGGG 1 cut(s) 1274
BmsI GCATC 1 cut(s) 580
BmuI ACTGGG 1 cut(s) 1274
BpmI CTGGAG 1 cut(s) 743
Bpu10I CCTNAGC 1 cut(s) 281
BpuEI CTTGAG 1 cut(s) 790
BpuMI CCSGG 4 cut(s) 174, 175, 213, 428
BsaBI GATNNNNATC 1 cut(s) 1225
BsaHI GRCGYC 1 cut(s) 115
BsaJI CCNNGG 6 cut(s) 173, 211, 293, 992, 1141, 1233
BsaWI WCCGGW 1 cut(s) 152
BsaXI ACNNNNNCTCC 2 cut(s) 651, 681
Bsc4I CCNNNNNNNGG 3 cut(s) 749, 854, 1115
Bse118I RCCGGY 1 cut(s) 187
Bse1I ACTGG 3 cut(s) 729, 1168, 1280
Bse3DI GCAATG 1 cut(s) 1065
Bse8I GATNNNNATC 1 cut(s) 1225
BseBI CCWGG 1 cut(s) 294
BseDI CCNNGG 6 cut(s) 173, 211, 293, 992, 1141, 1233
BseGI GGATG 5 cut(s) 38, 474, 486, 595, 984
BseJI GATNNNNATC 1 cut(s) 1225
BseLI CCNNNNNNNGG 3 cut(s) 749, 854, 1115
BseMI GCAATG 1 cut(s) 1065
BseMII CTCAG 1 cut(s) 272
BseNI ACTGG 3 cut(s) 729, 1168, 1280
BseXI GCAGC 3 cut(s) 46, 705, 1165
BsgI GTGCAG 1 cut(s) 987
Bsh1236I CGCG 6 cut(s) 19, 21, 600, 602, 776, 1235
BshFI GGCC 3 cut(s) 178, 927, 1055
BshNI GGYRCC 1 cut(s) 689
BsiHKAI GWGCWC 1 cut(s) 71
BsiHKCI CYCGRG 1 cut(s) 173
BsiSI CCGG 6 cut(s) 153, 162, 174, 188, 213, 428
BslFI GGGAC 3 cut(s) 452, 588, 653
BslI CCNNNNNNNGG 3 cut(s) 749, 854, 1115
BsmAI GTCTC 2 cut(s) 241, 1261
BsmFI GGGAC 3 cut(s) 452, 588, 653
BsmI GAATGC 1 cut(s) 348
BsnI GGCC 3 cut(s) 178, 927, 1055
BsoBI CYCGRG 1 cut(s) 173
Bsp1286I GDGCHC 1 cut(s) 71
Bsp1407I TGTACA 1 cut(s) 1008
Bsp143I GATC 7 cut(s) 251, 302, 366, 420, 734, 1220, 1351
Bsp19I CCATGG 1 cut(s) 992
BspANI GGCC 3 cut(s) 178, 927, 1055
BspCNI CTCAG 1 cut(s) 273
BspFNI CGCG 6 cut(s) 19, 21, 600, 602, 776, 1235
BspLI GGNNCC 4 cut(s) 253, 691, 1107, 1239
BspMI ACCTGC 1 cut(s) 1009
BspPI GGATC 4 cut(s) 246, 259, 742, 1228
BspQI GCTCTTC 2 cut(s) 76, 139
BspT107I GGYRCC 1 cut(s) 689
BsrDI GCAATG 1 cut(s) 1065
BsrFI RCCGGY 1 cut(s) 187
BsrGI TGTACA 1 cut(s) 1008
BsrI ACTGG 3 cut(s) 729, 1168, 1280
BssAI RCCGGY 1 cut(s) 187
BssECI CCNNGG 6 cut(s) 173, 211, 293, 992, 1141, 1233
BssMI GATC 7 cut(s) 251, 302, 366, 420, 734, 1220, 1351
BssNI GRCGYC 1 cut(s) 115
BssSI CACGAG 1 cut(s) 675
BssT1I CCWWGG 2 cut(s) 992, 1141
Bst2BI CACGAG 1 cut(s) 675
Bst2UI CCWGG 1 cut(s) 294
Bst4CI ACNGT 6 cut(s) 373, 442, 625, 1008, 1030, 1207
Bst6I CTCTTC 5 cut(s) 76, 100, 139, 145, 308
BstACI GRCGYC 1 cut(s) 115
BstAUI TGTACA 1 cut(s) 1008
BstC8I GCNNGC 3 cut(s) 130, 189, 567
BstDEI CTNAG 3 cut(s) 281, 800, 1263
BstDSI CCRYGG 2 cut(s) 992, 1233
BstF5I GGATG 5 cut(s) 38, 474, 486, 595, 984
BstFNI CGCG 6 cut(s) 19, 21, 600, 602, 776, 1235
BstHHI GCGC 3 cut(s) 21, 602, 776
BstKTI GATC 7 cut(s) 254, 305, 369, 423, 737, 1223, 1354
BstMAI GTCTC 2 cut(s) 241, 1261
BstMBI GATC 7 cut(s) 251, 302, 366, 420, 734, 1220, 1351
BstMWI GCNNNNNNNGC 5 cut(s) 184, 298, 461, 599, 1127
BstNI CCWGG 1 cut(s) 294
BstSCI CCNGG 5 cut(s) 172, 173, 211, 292, 426
BstSFI CTRYAG 1 cut(s) 372
BstUI CGCG 6 cut(s) 19, 21, 600, 602, 776, 1235
BstV1I GCAGC 3 cut(s) 46, 705, 1165
BstX2I RGATCY 2 cut(s) 251, 734
BstXI CCANNNNNNTGG 1 cut(s) 951
BstYI RGATCY 2 cut(s) 251, 734
BsuI GTATCC 2 cut(s) 990, 1336
BsuRI GGCC 3 cut(s) 178, 927, 1055
BtgI CCRYGG 2 cut(s) 992, 1233
BtsCI GGATG 5 cut(s) 38, 474, 486, 595, 984
BtsIMutI CAGTG 6 cut(s) 369, 621, 736, 1004, 1026, 1287
BveI ACCTGC 1 cut(s) 1009
Cac8I GCNNGC 3 cut(s) 130, 189, 567
CfoI GCGC 3 cut(s) 21, 602, 776
Cfr10I RCCGGY 1 cut(s) 187
Cfr13I GGNCC 2 cut(s) 176, 215
Cfr42I CCGCGG 1 cut(s) 1236
Cfr9I CCCGGG 1 cut(s) 173
CseI GACGC 1 cut(s) 591
Csp6I GTAC 2 cut(s) 898, 1009
CviAII CATG 6 cut(s) 30, 697, 912, 957, 993, 1131
CviQI GTAC 2 cut(s) 898, 1009
DdeI CTNAG 3 cut(s) 281, 800, 1263
DpnI GATC 7 cut(s) 253, 304, 368, 422, 736, 1222, 1353
DpnII GATC 7 cut(s) 251, 302, 366, 420, 734, 1220, 1351
EaeI YGGCCR 1 cut(s) 1053
Eam1104I CTCTTC 5 cut(s) 76, 100, 139, 145, 308
EarI CTCTTC 5 cut(s) 76, 100, 139, 145, 308
Eco130I CCWWGG 2 cut(s) 992, 1141
Eco47I GGWCC 1 cut(s) 215
Eco88I CYCGRG 1 cut(s) 173
EcoRII CCWGG 1 cut(s) 292
EcoT14I CCWWGG 2 cut(s) 992, 1141
ErhI CCWWGG 2 cut(s) 992, 1141
FaeI CATG 6 cut(s) 33, 700, 915, 960, 996, 1134
FaqI GGGAC 3 cut(s) 452, 588, 653
FatI CATG 6 cut(s) 29, 696, 911, 956, 992, 1130
FauI CCCGC 2 cut(s) 14, 1240
FauNDI CATATG 1 cut(s) 795
FbaI TGATCA 1 cut(s) 366
Fnu4HI GCNGC 7 cut(s) 6, 17, 60, 432, 719, 1056, 1179
FokI GGATG 5 cut(s) 25, 461, 473, 602, 991
Fsp4HI GCNGC 7 cut(s) 6, 17, 60, 432, 719, 1056, 1179
FspBI CTAG 1 cut(s) 744
GlaI GCGC 3 cut(s) 20, 601, 775
GluI GCNGC 7 cut(s) 6, 17, 60, 432, 719, 1056, 1179
GsuI CTGGAG 1 cut(s) 743
HaeIII GGCC 3 cut(s) 178, 927, 1055
HapII CCGG 6 cut(s) 153, 162, 174, 188, 213, 428
HgaI GACGC 1 cut(s) 591
HhaI GCGC 3 cut(s) 21, 602, 776
Hin1I GRCGYC 1 cut(s) 115
Hin1II CATG 6 cut(s) 33, 700, 915, 960, 996, 1134
Hin6I GCGC 3 cut(s) 19, 600, 774
HinP1I GCGC 3 cut(s) 19, 600, 774
HindIII AAGCTT 1 cut(s) 1198
HinfI GANTC 4 cut(s) 88, 413, 725, 1269
HpaII CCGG 6 cut(s) 153, 162, 174, 188, 213, 428
HphI GGTGA 3 cut(s) 115, 512, 1308
Hpy166II GTNNAC 4 cut(s) 438, 621, 954, 1011
Hpy188I TCNGA 4 cut(s) 491, 589, 1212, 1291
Hpy188III TCNNGA 4 cut(s) 394, 769, 819, 1335
Hpy8I GTNNAC 4 cut(s) 438, 621, 954, 1011
Hpy99I CGWCG 4 cut(s) 88, 117, 120, 607
HpyAV CCTTC 2 cut(s) 703, 1251
HpyCH4III ACNGT 6 cut(s) 373, 442, 625, 1008, 1030, 1207
HpyCH4IV ACGT 3 cut(s) 115, 900, 1068
HpyCH4V TGCA 5 cut(s) 383, 521, 565, 1004, 1130
HpyF10VI GCNNNNNNNGC 5 cut(s) 184, 298, 461, 599, 1127
HpyF3I CTNAG 3 cut(s) 281, 800, 1263
HpySE526I ACGT 3 cut(s) 115, 900, 1068
Hsp92I GRCGYC 1 cut(s) 115
Hsp92II CATG 6 cut(s) 33, 700, 915, 960, 996, 1134
HspAI GCGC 3 cut(s) 19, 600, 774
KroI GCCGGC 1 cut(s) 187
KroNI GCCGGC 1 cut(s) 189
Ksp22I TGATCA 1 cut(s) 366
KspI CCGCGG 1 cut(s) 1236
Kzo9I GATC 7 cut(s) 251, 302, 366, 420, 734, 1220, 1351
LguI GCTCTTC 2 cut(s) 76, 139
LmnI GCTCC 4 cut(s) 164, 345, 659, 1237
Lsp1109I GCAGC 3 cut(s) 46, 705, 1165
LweI GCATC 1 cut(s) 580
MaeI CTAG 1 cut(s) 744
MaeII ACGT 3 cut(s) 115, 900, 1068
MaeIII GTNAC 2 cut(s) 386, 1064
MalI GATC 7 cut(s) 253, 304, 368, 422, 736, 1222, 1353
MboI GATC 7 cut(s) 251, 302, 366, 420, 734, 1220, 1351
MboII GAAGA 9 cut(s) 63, 66, 87, 126, 132, 141, 316, 325, 344
MflI RGATCY 2 cut(s) 251, 734
MhlI GDGCHC 1 cut(s) 71
MluCI AATT 3 cut(s) 194, 1092, 1253
MlyI GAGTC 3 cut(s) 422, 734, 1263
MmeI TCCRAC 2 cut(s) 242, 730
MnlI CCTC 9 cut(s) 91, 148, 309, 340, 400, 491, 858, 938, 1324
MroNI GCCGGC 1 cut(s) 187
MseI TTAA 2 cut(s) 939, 1202
MslI CAYNNNNRTG 1 cut(s) 949
MspA1I CMGCKG 3 cut(s) 59, 464, 1235
MspI CCGG 6 cut(s) 153, 162, 174, 188, 213, 428
MspR9I CCNGG 5 cut(s) 174, 175, 213, 294, 428
Mva1269I GAATGC 1 cut(s) 348
MvaI CCWGG 1 cut(s) 294
MvnI CGCG 6 cut(s) 19, 21, 600, 602, 776, 1235
MwoI GCNNNNNNNGC 5 cut(s) 184, 298, 461, 599, 1127
NaeI GCCGGC 1 cut(s) 189
NciI CCSGG 4 cut(s) 174, 175, 213, 428
NcoI CCATGG 1 cut(s) 992
NdeI CATATG 1 cut(s) 795
NdeII GATC 7 cut(s) 251, 302, 366, 420, 734, 1220, 1351
NgoMIV GCCGGC 1 cut(s) 187
NlaIII CATG 6 cut(s) 33, 700, 915, 960, 996, 1134
NlaIV GGNNCC 4 cut(s) 253, 691, 1107, 1239
NmuCI GTSAC 1 cut(s) 1064
PciSI GCTCTTC 2 cut(s) 76, 139
PctI GAATGC 1 cut(s) 348
PdiI GCCGGC 1 cut(s) 189
PfeI GAWTC 1 cut(s) 88
PkrI GCNGC 7 cut(s) 7, 18, 61, 433, 720, 1057, 1180
PleI GAGTC 3 cut(s) 421, 733, 1263
PpsI GAGTC 3 cut(s) 421, 733, 1263
Psp6I CCWGG 1 cut(s) 292
PspGI CCWGG 1 cut(s) 292
PspN4I GGNNCC 4 cut(s) 253, 691, 1107, 1239
PspPI GGNCC 2 cut(s) 176, 215
PsuI RGATCY 2 cut(s) 251, 734
PvuII CAGCTG 1 cut(s) 464
RsaI GTAC 2 cut(s) 899, 1010
RsaNI GTAC 2 cut(s) 898, 1009
RseI CAYNNNNRTG 1 cut(s) 949
SacII CCGCGG 1 cut(s) 1236
SapI GCTCTTC 2 cut(s) 76, 139
SaqAI TTAA 2 cut(s) 939, 1202
SatI GCNGC 7 cut(s) 6, 17, 60, 432, 719, 1056, 1179
Sau3AI GATC 7 cut(s) 251, 302, 366, 420, 734, 1220, 1351
Sau96I GGNCC 2 cut(s) 176, 215
SchI GAGTC 3 cut(s) 422, 734, 1263
ScrFI CCNGG 5 cut(s) 174, 175, 213, 294, 428
SduI GDGCHC 1 cut(s) 71
SfaNI GCATC 1 cut(s) 580
SfcI CTRYAG 1 cut(s) 372
Sfr303I CCGCGG 1 cut(s) 1236
SgrBI CCGCGG 1 cut(s) 1236
SinI GGWCC 1 cut(s) 215
SmaI CCCGGG 1 cut(s) 175
SmiMI CAYNNNNRTG 1 cut(s) 949
SmlI CTYRAG 1 cut(s) 769
SmoI CTYRAG 1 cut(s) 769
Sse9I AATT 3 cut(s) 194, 1092, 1253
SspMI CTAG 1 cut(s) 744
StyD4I CCNGG 5 cut(s) 172, 173, 211, 292, 426
StyI CCWWGG 2 cut(s) 992, 1141
TaaI ACNGT 6 cut(s) 373, 442, 625, 1008, 1030, 1207
TaiI ACGT 3 cut(s) 118, 903, 1071
TaqI TCGA 3 cut(s) 86, 395, 423
TasI AATT 3 cut(s) 194, 1092, 1253
TatI WGTACW 1 cut(s) 1008
TauI GCSGC 3 cut(s) 19, 434, 1058
TfiI GAWTC 1 cut(s) 88
Tru1I TTAA 2 cut(s) 939, 1202
Tru9I TTAA 2 cut(s) 939, 1202
TscAI CASTG 6 cut(s) 376, 628, 736, 1011, 1033, 1287
TseFI GTSAC 1 cut(s) 1064
TseI GCWGC 4 cut(s) 5, 59, 718, 1178
Tsp45I GTSAC 1 cut(s) 1064
TspDTI ATGAA 5 cut(s) 27, 463, 685, 782, 1266
TspMI CCCGGG 1 cut(s) 173
TspRI CASTG 6 cut(s) 376, 628, 736, 1011, 1033, 1287
VpaK11BI GGWCC 1 cut(s) 215
XmaI CCCGGG 1 cut(s) 173
XspI CTAG 1 cut(s) 744
ZraI GACGTC 1 cut(s) 116
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.