Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb4

Orthogroup ID

OG0016319

Physical Location & Seq

Genomic Coordinates Forward (+)

31726132 .. 31734566

Gene Structure 8435 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_4g33510.t2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1644 bp

ATGGCCGACACTCAATACCAGCGGACTCTCCACATCGCCAATCTGCAGGCGTGGATGGACGAGGCGTACCTCAAGAACTGCTTTGAGGAATTGGGTAACGAGATTCAGAGTGTTGAGATTTTTGCTGTGGGATCCAAGGGTTATGGATATGGATTCATCGAGTTCACCTCTATTGAGAGAGCTCGCAGTGTATTGAAGAGATACCGTGGGACAAAAATGCCTAATGCATCCCAACACTTTGTGCTGAATTGGAGCAAGGGCAAGCAGCCATTGCCAACCCAAGATGCATCCGAAGGAGGTATACTAGGCAAGGGGCCGTTGACAACGCAAGATGCATCTGAAGGAGGGAATTACAAGCTTGTGGTTGCTGGGGCTTTTCCAAAGGACGTTACTGCTGAAGAGCTGCAGCAGCACTTTAGTATCCATTTCCCTTCATTTAAGGATGCTGGAGTTCACACTAACGAATCCCAGGAGTTATATGGTGTAATTACATTTGCAGATGAGCATGAAAGGGATCTAGCAACAATTCTGATGCCTGGGCAAGTTTTTAAGAGGACAGGAGACAGCAAACCACGACATTTCTTCTATAAAGATACAGCTGATGAGTACAAGAAAGCTGCCTATCCGGAGGATGCAGATCCAAATGGTTCCACAATGTACGTTCAGAACTTAAGAAATGGTGTATCCGAAGGTTCCTTGCGACTTAAATTTTCCCCCTATGGCGAGGTTACTAAAGTCACCATAAGGGCAAGTGCTTTGATTCAATTTTCTGATAGATCGAGTGTCAATAAAGCATTGCTTGACATGAACGATGGCCTCATTCTTCAGAATGCCTGTCTTCCATTTACCGTCAGAAAATCAAATGGAAAAGTAAAAGAGTGGAAGCAAAAAGAGAAGGAGAAACAAGTCGTACTTGCTTTCTCAGGGCAAGCGGATGAGGACATACTGTTGTCTGAATCTGTGGGCAGGTCGAGTGCTGATAAAACATTGCCTCACATGAATGATGATTCCGTTCTGCAGAATTCTGTAGAATCACCCAAAGATCTTAACGAGTTACCCCTTGAAGATGAAGAGTTCAGAACGTGTGATGAAGAGTTTTCTGATGAAAAAGTAGCAGAGGAGGGGAAGCAAAATGAAGAGGGGACAGAAGTCGCAGATGCTTTGTCAAGGCAAGCAGATGAAGAAACACTGCTGTCTAAGTTTGTGGACAGGTCGAGTGCTGATGAAACATTGCTTCACATGAATGATGATCCCGTTCTGAAGAATAGCTTACTTCCACCGACTGTCAGAAAATCAAATGGTATAAAAACGGATGAACAGAAACAGAGGAGGAGGGAGAAGAAGAAAGGGCAGAGGGCAAGGAAGAAGGAAAGAGATAAGCTTGCCAAGCAATCCACTGGAGGGTTGGAGGAATCAAGAGGGCAGCGAATCAATGAAGGGTCGGAGGCATCAGAAAGGCTAAACACCAATGATGGGTTGGAGGAATCAGAAGGGGAGGAAAGCAATGAAGGGGATCAATCAGTCATCTCTTGGCTGTTAGAATTGTGTGTGAGCCTGTGGCAACACTGGTTCAGGCTGGAGGAGAAGCCAGATGTGATGCAGCAACAGAGAGCAAACGAAGAAAAGCAGACTGGTCTGCCATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

RRM_1

Protein Analysis

548

Amino Acids

61.59

Weight (kDa)

5.09

Isoelectric Point (pI)

47.88

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0016319)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_4g33510 FvH4_4g33510 FvH4_4g33510
rosa_chinensis	RchiOBHm_Chr4g0442831
rosa_laevigata	RLG00000005979
rosa_multiflora	Rmu_co8507573.1_g000001 Rmu_sc0002303.1_g000001 Rmu_sc0034991.1_g000001 Rmu_ssc0000204.1_g000013
rosa_roxburghii	Rroxscaffold_5G00383630
rosa_rugosa	Rorug04G0343500
rosa_samantha	Rh4AG396100 Rh4BG409000 Rh4CG424500 Rh4DG403000

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	957
AccI	GTMKAC	1 cut(s)	301
AccIII	TCCGGA	1 cut(s)	625
AciI	CCGC	2 cut(s)	22, 932
AclWI	GGATC	6 cut(s)	126, 139, 522, 632, 1244, 1521
AcoI	YGGCCR	1 cut(s)	3
AcsI	RAATTY	2 cut(s)	707, 1021
AcuI	CTGAAG	4 cut(s)	360, 417, 809, 1280
AdeI	CACNNNGTG	1 cut(s)	241
AfaI	GTAC	4 cut(s)	68, 608, 659, 912
AfiI	CCNNNNNNNGG	2 cut(s)	1401, 1473
AflII	CTTAAG	1 cut(s)	670
AflIII	ACRYGT	1 cut(s)	1082
AgsI	TTSAA	3 cut(s)	196, 764, 1064
AjnI	CCWGG	2 cut(s)	468, 535
AluBI	AGCT	7 cut(s)	182, 358, 403, 599, 617, 1269, 1381
AluI	AGCT	7 cut(s)	182, 358, 403, 599, 617, 1269, 1381
Alw21I	GWGCWC	1 cut(s)	184
Alw26I	GTCTC	1 cut(s)	555
AlwI	GGATC	6 cut(s)	126, 139, 522, 632, 1244, 1521
Aor13HI	TCCGGA	1 cut(s)	625
AoxI	GGCC	3 cut(s)	3, 314, 814
ApeKI	GCWGC	7 cut(s)	265, 403, 406, 409, 617, 1423, 1600
ApoI	RAATTY	2 cut(s)	707, 1021
AspS9I	GGNCC	1 cut(s)	314
AsuHPI	GGTGA	3 cut(s)	157, 730, 1026
BaeI	ACNNNNGTAYC	2 cut(s)	403, 436
BamHI	GGATCC	1 cut(s)	131
BanII	GRGCYC	1 cut(s)	184
BarI	GAAGNNNNNNTAC	2 cut(s)	285, 317
BbsI	GAAGAC	1 cut(s)	830
Bbv12I	GWGCWC	1 cut(s)	184
BbvI	GCAGC	7 cut(s)	277, 390, 418, 421, 604, 1435, 1612
BccI	CCATC	3 cut(s)	49, 806, 1466
BceAI	ACGGC	1 cut(s)	301
BciT130I	CCWGG	2 cut(s)	470, 537
BciVI	GTATCC	2 cut(s)	431, 694
BcoDI	GTCTC	1 cut(s)	555
BfaI	CTAG	2 cut(s)	305, 518
BfmI	CTRYAG	4 cut(s)	44, 404, 1016, 1026
BfrI	CTTAAG	1 cut(s)	670
BfuAI	ACCTGC	1 cut(s)	957
BfuI	GTATCC	2 cut(s)	431, 694
BglII	AGATCT	1 cut(s)	1042
BisI	GCNGC	7 cut(s)	266, 404, 407, 410, 618, 1424, 1601
BlsI	GCNGC	7 cut(s)	267, 405, 408, 411, 619, 1425, 1602
Bme1390I	CCNGG	2 cut(s)	470, 537
BmgT120I	GGNCC	1 cut(s)	314
BmiI	GGNNCC	4 cut(s)	133, 315, 649, 694
BmrFI	CCNGG	2 cut(s)	470, 537
BoxI	GACNNNNGTC	1 cut(s)	1148
BpiI	GAAGAC	1 cut(s)	830
BplI	GAGNNNNNCTC	2 cut(s)	152, 184
BpmI	CTGGAG	3 cut(s)	468, 1419, 1598
BpuEI	CTTGAG	1 cut(s)	56
BsaBI	GATNNNNATC	1 cut(s)	636
BsaJI	CCNNGG	4 cut(s)	135, 205, 468, 536
BsaWI	WCCGGW	1 cut(s)	625
Bsc4I	CCNNNNNNNGG	2 cut(s)	1401, 1473
Bse1I	ACTGG	3 cut(s)	1402, 1571, 1636
Bse3DI	GCAATG	5 cut(s)	269, 794, 986, 1229, 1510
Bse8I	GATNNNNATC	1 cut(s)	636
BseAI	TCCGGA	1 cut(s)	625
BseBI	CCWGG	2 cut(s)	470, 537
BseDI	CCNNGG	4 cut(s)	135, 205, 468, 536
BseGI	GGATG	7 cut(s)	60, 227, 287, 448, 637, 940, 1318
BseJI	GATNNNNATC	1 cut(s)	636
BseLI	CCNNNNNNNGG	2 cut(s)	1401, 1473
BseMI	GCAATG	5 cut(s)	269, 794, 986, 1229, 1510
BseMII	CTCAG	1 cut(s)	936
BseNI	ACTGG	3 cut(s)	1402, 1571, 1636
BseRI	GAGGAG	4 cut(s)	1133, 1342, 1345, 1595
BseXI	GCAGC	7 cut(s)	277, 390, 418, 421, 604, 1435, 1612
BseYI	CCCAGC	1 cut(s)	368
BshFI	GGCC	3 cut(s)	5, 316, 816
BsiHKAI	GWGCWC	1 cut(s)	184
BsiSI	CCGG	1 cut(s)	626
BslFI	GGGAC	2 cut(s)	223, 1156
BslI	CCNNNNNNNGG	2 cut(s)	1401, 1473
BsmAI	GTCTC	1 cut(s)	555
BsmFI	GGGAC	2 cut(s)	223, 1156
BsmI	GAATGC	1 cut(s)	835
BsnI	GGCC	3 cut(s)	5, 316, 816
Bsp1286I	GDGCHC	1 cut(s)	184
Bsp13I	TCCGGA	1 cut(s)	625
Bsp143I	GATC	7 cut(s)	131, 514, 637, 776, 1042, 1249, 1513
BspACI	CCGC	2 cut(s)	22, 932
BspANI	GGCC	3 cut(s)	5, 316, 816
BspCNI	CTCAG	1 cut(s)	935
BspEI	TCCGGA	1 cut(s)	625
BspLI	GGNNCC	4 cut(s)	133, 315, 649, 694
BspMAI	CTGCAG	3 cut(s)	48, 408, 1020
BspMI	ACCTGC	1 cut(s)	957
BspPI	GGATC	6 cut(s)	126, 139, 522, 632, 1244, 1521
BspQI	GCTCTTC	1 cut(s)	393
BspTI	CTTAAG	1 cut(s)	670
BsrDI	GCAATG	5 cut(s)	269, 794, 986, 1229, 1510
BsrI	ACTGG	3 cut(s)	1402, 1571, 1636
BssECI	CCNNGG	4 cut(s)	135, 205, 468, 536
BssMI	GATC	7 cut(s)	131, 514, 637, 776, 1042, 1249, 1513
BssNAI	GTATAC	1 cut(s)	302
BssT1I	CCWWGG	1 cut(s)	135
Bst1107I	GTATAC	1 cut(s)	302
Bst2UI	CCWGG	2 cut(s)	470, 537
Bst4CI	ACNGT	4 cut(s)	206, 850, 948, 1285
Bst6I	CTCTTC	5 cut(s)	191, 393, 1065, 1086, 1131
BstAFI	CTTAAG	1 cut(s)	670
BstAPI	GCANNNNNTGC	1 cut(s)	271
BstC8I	GCNNGC	6 cut(s)	48, 184, 263, 930, 1173, 1383
BstDEI	CTNAG	2 cut(s)	922, 1197
BstDSI	CCRYGG	1 cut(s)	205
BstF5I	GGATG	7 cut(s)	60, 227, 287, 448, 637, 940, 1318
BstKTI	GATC	7 cut(s)	134, 517, 640, 779, 1045, 1252, 1516
BstMAI	GTCTC	1 cut(s)	555
BstMBI	GATC	7 cut(s)	131, 514, 637, 776, 1042, 1249, 1513
BstMWI	GCNNNNNNNGC	3 cut(s)	271, 409, 1387
BstNI	CCWGG	2 cut(s)	470, 537
BstPAI	GACNNNNGTC	1 cut(s)	1148
BstSCI	CCNGG	2 cut(s)	468, 535
BstSFI	CTRYAG	4 cut(s)	44, 404, 1016, 1026
BstV1I	GCAGC	7 cut(s)	277, 390, 418, 421, 604, 1435, 1612
BstV2I	GAAGAC	1 cut(s)	830
BstX2I	RGATCY	4 cut(s)	131, 514, 637, 1042
BstYI	RGATCY	4 cut(s)	131, 514, 637, 1042
BstZ17I	GTATAC	1 cut(s)	302
BsuI	GTATCC	2 cut(s)	431, 694
BsuRI	GGCC	3 cut(s)	5, 316, 816
BtgI	CCRYGG	1 cut(s)	205
BtgZI	GCGATG	1 cut(s)	19
BtsCI	GGATG	7 cut(s)	60, 227, 287, 448, 637, 940, 1318
BtsI	GCAGTG	2 cut(s)	193, 1187
BtsIMutI	CAGTG	4 cut(s)	193, 1187, 1395, 1564
BveI	ACCTGC	1 cut(s)	957
Cac8I	GCNNGC	6 cut(s)	48, 184, 263, 930, 1173, 1383
Cfr13I	GGNCC	1 cut(s)	314
Csp6I	GTAC	4 cut(s)	67, 607, 658, 911
CviAII	CATG	4 cut(s)	506, 805, 997, 1240
CviQI	GTAC	4 cut(s)	67, 607, 658, 911
DdeI	CTNAG	2 cut(s)	922, 1197
DpnI	GATC	7 cut(s)	133, 516, 639, 778, 1044, 1251, 1515
DpnII	GATC	7 cut(s)	131, 514, 637, 776, 1042, 1249, 1513
DraIII	CACNNNGTG	1 cut(s)	241
EaeI	YGGCCR	1 cut(s)	3
Eam1104I	CTCTTC	5 cut(s)	191, 393, 1065, 1086, 1131
EarI	CTCTTC	5 cut(s)	191, 393, 1065, 1086, 1131
Ecl136II	GAGCTC	1 cut(s)	182
Eco130I	CCWWGG	1 cut(s)	135
Eco24I	GRGCYC	1 cut(s)	184
Eco53kI	GAGCTC	1 cut(s)	182
Eco57I	CTGAAG	4 cut(s)	360, 417, 809, 1280
EcoICRI	GAGCTC	1 cut(s)	182
EcoRI	GAATTC	1 cut(s)	1021
EcoRII	CCWGG	2 cut(s)	468, 535
EcoT14I	CCWWGG	1 cut(s)	135
EcoT22I	ATGCAT	3 cut(s)	229, 289, 337
EcoT38I	GRGCYC	1 cut(s)	184
ErhI	CCWWGG	1 cut(s)	135
FaeI	CATG	4 cut(s)	509, 808, 1000, 1243
FalI	AAGNNNNNCTT	8 cut(s)	65, 97, 783, 815, 897, 929, 1253, 1285
FaqI	GGGAC	2 cut(s)	223, 1156
FatI	CATG	4 cut(s)	505, 804, 996, 1239
FblI	GTMKAC	1 cut(s)	301
Fnu4HI	GCNGC	7 cut(s)	266, 404, 407, 410, 618, 1424, 1601
FokI	GGATG	7 cut(s)	67, 214, 274, 455, 644, 947, 1325
FriOI	GRGCYC	1 cut(s)	184
Fsp4HI	GCNGC	7 cut(s)	266, 404, 407, 410, 618, 1424, 1601
FspBI	CTAG	2 cut(s)	305, 518
GluI	GCNGC	7 cut(s)	266, 404, 407, 410, 618, 1424, 1601
GsaI	CCCAGC	1 cut(s)	372
GsuI	CTGGAG	3 cut(s)	468, 1419, 1598
HaeIII	GGCC	3 cut(s)	5, 316, 816
HapII	CCGG	1 cut(s)	626
Hin1II	CATG	4 cut(s)	509, 808, 1000, 1243
HincII	GTYRAC	1 cut(s)	321
HindII	GTYRAC	1 cut(s)	321
HindIII	AAGCTT	2 cut(s)	356, 1379
HpaII	CCGG	1 cut(s)	626
HphI	GGTGA	3 cut(s)	157, 730, 1026
Hpy166II	GTNNAC	5 cut(s)	165, 302, 321, 454, 1207
Hpy188III	TCNNGA	3 cut(s)	73, 626, 1416
Hpy8I	GTNNAC	5 cut(s)	165, 302, 321, 454, 1207
HpyAV	CCTTC	9 cut(s)	287, 335, 441, 683, 889, 1360, 1430, 1484, 1502
HpyCH4III	ACNGT	4 cut(s)	206, 850, 948, 1285
HpyCH4IV	ACGT	3 cut(s)	387, 660, 1082
HpyCH4V	TGCA	9 cut(s)	46, 227, 287, 335, 406, 497, 635, 1018, 1600
HpyF10VI	GCNNNNNNNGC	3 cut(s)	271, 409, 1387
HpyF3I	CTNAG	2 cut(s)	922, 1197
HpySE526I	ACGT	3 cut(s)	387, 660, 1082
Hsp92II	CATG	4 cut(s)	509, 808, 1000, 1243
Kpn2I	TCCGGA	1 cut(s)	625
Kzo9I	GATC	7 cut(s)	131, 514, 637, 776, 1042, 1249, 1513
LguI	GCTCTTC	1 cut(s)	393
LmnI	GCTCC	1 cut(s)	252
Lsp1109I	GCAGC	7 cut(s)	277, 390, 418, 421, 604, 1435, 1612
MaeI	CTAG	2 cut(s)	305, 518
MaeII	ACGT	3 cut(s)	387, 660, 1082
MaeIII	GTNAC	5 cut(s)	95, 388, 727, 736, 1053
MalI	GATC	7 cut(s)	133, 516, 639, 778, 1044, 1251, 1515
MboI	GATC	7 cut(s)	131, 514, 637, 776, 1042, 1249, 1513
MflI	RGATCY	4 cut(s)	131, 514, 637, 1042
MhlI	GDGCHC	1 cut(s)	184
MluCI	AATT	9 cut(s)	89, 247, 349, 486, 525, 707, 764, 1021, 1541
MlyI	GAGTC	1 cut(s)	19
MmeI	TCCRAC	3 cut(s)	1386, 1422, 1458
Mph1103I	ATGCAT	3 cut(s)	229, 289, 337
MroI	TCCGGA	1 cut(s)	625
MseI	TTAA	5 cut(s)	438, 549, 671, 705, 1047
MslI	CAYNNNNRTG	2 cut(s)	999, 1242
MspA1I	CMGCKG	2 cut(s)	22, 599
MspCI	CTTAAG	1 cut(s)	670
MspI	CCGG	1 cut(s)	626
MspR9I	CCNGG	2 cut(s)	470, 537
Mva1269I	GAATGC	1 cut(s)	835
MvaI	CCWGG	2 cut(s)	470, 537
MwoI	GCNNNNNNNGC	3 cut(s)	271, 409, 1387
NdeII	GATC	7 cut(s)	131, 514, 637, 776, 1042, 1249, 1513
NlaIII	CATG	4 cut(s)	509, 808, 1000, 1243
NlaIV	GGNNCC	4 cut(s)	133, 315, 649, 694
NmuCI	GTSAC	1 cut(s)	736
NsiI	ATGCAT	3 cut(s)	229, 289, 337
PciSI	GCTCTTC	1 cut(s)	393
PctI	GAATGC	1 cut(s)	835
PkrI	GCNGC	7 cut(s)	267, 405, 408, 411, 619, 1425, 1602
PleI	GAGTC	1 cut(s)	19
PpsI	GAGTC	1 cut(s)	19
PshAI	GACNNNNGTC	1 cut(s)	1148
Psp124BI	GAGCTC	1 cut(s)	184
Psp6I	CCWGG	2 cut(s)	468, 535
PspFI	CCCAGC	1 cut(s)	368
PspGI	CCWGG	2 cut(s)	468, 535
PspN4I	GGNNCC	4 cut(s)	133, 315, 649, 694
PspPI	GGNCC	1 cut(s)	314
PstI	CTGCAG	3 cut(s)	48, 408, 1020
PsuI	RGATCY	4 cut(s)	131, 514, 637, 1042
PvuII	CAGCTG	1 cut(s)	599
RsaI	GTAC	4 cut(s)	68, 608, 659, 912
RsaNI	GTAC	4 cut(s)	67, 607, 658, 911
RseI	CAYNNNNRTG	2 cut(s)	999, 1242
SacI	GAGCTC	1 cut(s)	184
SapI	GCTCTTC	1 cut(s)	393
SaqAI	TTAA	5 cut(s)	438, 549, 671, 705, 1047
SatI	GCNGC	7 cut(s)	266, 404, 407, 410, 618, 1424, 1601
Sau3AI	GATC	7 cut(s)	131, 514, 637, 776, 1042, 1249, 1513
Sau96I	GGNCC	1 cut(s)	314
SchI	GAGTC	1 cut(s)	19
ScrFI	CCNGG	2 cut(s)	470, 537
SduI	GDGCHC	1 cut(s)	184
SfcI	CTRYAG	4 cut(s)	44, 404, 1016, 1026
SmiMI	CAYNNNNRTG	2 cut(s)	999, 1242
SmlI	CTYRAG	2 cut(s)	71, 670
SmoI	CTYRAG	2 cut(s)	71, 670
Sse9I	AATT	9 cut(s)	89, 247, 349, 486, 525, 707, 764, 1021, 1541
SsiI	CCGC	2 cut(s)	22, 932
SspMI	CTAG	2 cut(s)	305, 518
SstI	GAGCTC	1 cut(s)	184
StyD4I	CCNGG	2 cut(s)	468, 535
StyI	CCWWGG	1 cut(s)	135
TaaI	ACNGT	4 cut(s)	206, 850, 948, 1285
TaiI	ACGT	3 cut(s)	390, 663, 1085
TaqI	TCGA	4 cut(s)	159, 779, 971, 1214
TasI	AATT	9 cut(s)	89, 247, 349, 486, 525, 707, 764, 1021, 1541
TatI	WGTACW	1 cut(s)	606
Tru1I	TTAA	5 cut(s)	438, 549, 671, 705, 1047
Tru9I	TTAA	5 cut(s)	438, 549, 671, 705, 1047
TscAI	CASTG	4 cut(s)	193, 1194, 1402, 1571
TseFI	GTSAC	1 cut(s)	736
TseI	GCWGC	7 cut(s)	265, 403, 406, 409, 617, 1423, 1600
Tsp45I	GTSAC	1 cut(s)	736
TspGWI	ACGGA	2 cut(s)	1000, 1325
TspRI	CASTG	4 cut(s)	193, 1194, 1402, 1571
Vha464I	CTTAAG	1 cut(s)	670
XapI	RAATTY	2 cut(s)	707, 1021
XcmI	CCANNNNNNNNNTGG	3 cut(s)	476, 1402, 1474
XmiI	GTMKAC	1 cut(s)	301
XspI	CTAG	2 cut(s)	305, 518
Zsp2I	ATGCAT	3 cut(s)	229, 289, 337

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.