RNA binding
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| Species | Orthologous Gene IDs |
|---|---|
| fragaria_vesca | FvH4_4g33510 FvH4_4g33510 FvH4_4g33510 |
| rosa_chinensis | RchiOBHm_Chr4g0442831 |
| rosa_laevigata | RLG00000005979 |
| rosa_multiflora | Rmu_co8507573.1_g000001 Rmu_sc0002303.1_g000001 Rmu_sc0034991.1_g000001 Rmu_ssc0000204.1_g000013 |
| rosa_roxburghii | Rroxscaffold_5G00383630 |
| rosa_rugosa | Rorug04G0343500 |
| rosa_samantha | Rh4AG396100 Rh4BG409000 Rh4CG424500 Rh4DG403000 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AciI | CCGC | 5 cut(s) | 5, 554, 1000, 1060, 1511 |
| AclWI | GGATC | 3 cut(s) | 363, 2041, 2083 |
| AcoI | YGGCCR | 2 cut(s) | 516, 1473 |
| AcsI | RAATTY | 4 cut(s) | 701, 1312, 1658, 1820 |
| AcuI | CTGAAG | 9 cut(s) | 399, 399, 450, 1299, 1356, 1356, 1407, 1980, 2600 |
| AfaI | GTAC | 7 cut(s) | 98, 590, 613, 1179, 1190, 1547, 1570 |
| AfiI | CCNNNNNNNGG | 6 cut(s) | 622, 1059, 1283, 1579, 2442, 2478 |
| AflII | CTTAAG | 5 cut(s) | 125, 914, 1871, 2048, 2426 |
| AflIII | ACRYGT | 2 cut(s) | 2096, 2270 |
| AjnI | CCWGG | 6 cut(s) | 45, 90, 450, 1037, 1258, 1407 |
| AleI | CACNNNNGTG | 2 cut(s) | 441, 1398 |
| AloI | GAACNNNNNNTCC | 2 cut(s) | 42, 74 |
| Alw21I | GWGCWC | 2 cut(s) | 751, 1708 |
| Alw26I | GTCTC | 9 cut(s) | 60, 204, 221, 278, 1017, 1161, 1235, 1246, 2368 |
| AlwI | GGATC | 3 cut(s) | 363, 2041, 2083 |
| AlwNI | CAGNNNCTG | 5 cut(s) | 584, 950, 1541, 1907, 2084 |
| AoxI | GGCC | 4 cut(s) | 287, 516, 1035, 1473 |
| ApoI | RAATTY | 4 cut(s) | 701, 1312, 1658, 1820 |
| Asp700I | GAANNNNTTC | 2 cut(s) | 867, 2157 |
| AspS9I | GGNCC | 3 cut(s) | 88, 288, 1245 |
| AsuHPI | GGTGA | 9 cut(s) | 724, 728, 1681, 1685, 1988, 2028, 2202, 2341, 2401 |
| AsuNHI | GCTAGC | 1 cut(s) | 1103 |
| AvaII | GGWCC | 2 cut(s) | 88, 1245 |
| AxyI | CCTNAGG | 1 cut(s) | 1161 |
| BaeI | ACNNNNGTAYC | 4 cut(s) | 595, 628, 1552, 1585 |
| BalI | TGGCCA | 2 cut(s) | 518, 1475 |
| BanII | GRGCYC | 1 cut(s) | 2286 |
| BbsI | GAAGAC | 5 cut(s) | 549, 897, 1506, 1854, 2187 |
| Bbv12I | GWGCWC | 2 cut(s) | 751, 1708 |
| BccI | CCATC | 5 cut(s) | 79, 624, 1036, 1301, 1581 |
| BceAI | ACGGC | 2 cut(s) | 562, 987 |
| BciT130I | CCWGG | 6 cut(s) | 47, 92, 452, 1039, 1260, 1409 |
| BciVI | GTATCC | 2 cut(s) | 619, 1576 |
| BcoDI | GTCTC | 9 cut(s) | 60, 204, 221, 278, 1017, 1161, 1235, 1246, 2368 |
| BfaI | CTAG | 3 cut(s) | 500, 1104, 1457 |
| BfmI | CTRYAG | 6 cut(s) | 386, 818, 1343, 1775, 2001, 2175 |
| BfrI | CTTAAG | 5 cut(s) | 125, 914, 1871, 2048, 2426 |
| BfuI | GTATCC | 2 cut(s) | 619, 1576 |
| BglII | AGATCT | 1 cut(s) | 2008 |
| Bme1390I | CCNGG | 6 cut(s) | 47, 92, 452, 1039, 1260, 1409 |
| Bme18I | GGWCC | 2 cut(s) | 88, 1245 |
| BmgT120I | GGNCC | 3 cut(s) | 88, 288, 1245 |
| BmiI | GGNNCC | 1 cut(s) | 2283 |
| BmrFI | CCNGG | 6 cut(s) | 47, 92, 452, 1039, 1260, 1409 |
| BmtI | GCTAGC | 1 cut(s) | 1107 |
| BpiI | GAAGAC | 5 cut(s) | 549, 897, 1506, 1854, 2187 |
| BpmI | CTGGAG | 5 cut(s) | 29, 209, 245, 1166, 1971 |
| BpuEI | CTTGAG | 2 cut(s) | 306, 2033 |
| BsaBI | GATNNNNATC | 6 cut(s) | 630, 946, 1587, 1903, 2080, 2254 |
| BsaI | GGTCTC | 4 cut(s) | 60, 204, 1161, 1246 |
| BsaJI | CCNNGG | 6 cut(s) | 252, 450, 451, 1209, 1407, 1408 |
| BsaXI | ACNNNNNCTCC | 8 cut(s) | 42, 72, 123, 153, 182, 212, 1139, 1169 |
| Bsc4I | CCNNNNNNNGG | 6 cut(s) | 622, 1059, 1283, 1579, 2442, 2478 |
| Bse1I | ACTGG | 7 cut(s) | 441, 519, 872, 1398, 1476, 1988, 2162 |
| Bse21I | CCTNAGG | 1 cut(s) | 1161 |
| Bse3DI | GCAATG | 3 cut(s) | 299, 788, 1745 |
| Bse8I | GATNNNNATC | 6 cut(s) | 630, 946, 1587, 1903, 2080, 2254 |
| BseBI | CCWGG | 6 cut(s) | 47, 92, 452, 1039, 1260, 1409 |
| BseDI | CCNNGG | 6 cut(s) | 252, 450, 451, 1209, 1407, 1408 |
| BseJI | GATNNNNATC | 6 cut(s) | 630, 946, 1587, 1903, 2080, 2254 |
| BseLI | CCNNNNNNNGG | 6 cut(s) | 622, 1059, 1283, 1579, 2442, 2478 |
| BseMI | GCAATG | 3 cut(s) | 299, 788, 1745 |
| BseMII | CTCAG | 3 cut(s) | 576, 1152, 1533 |
| BseNI | ACTGG | 7 cut(s) | 441, 519, 872, 1398, 1476, 1988, 2162 |
| BseYI | CCCAGC | 1 cut(s) | 350 |
| BsgI | GTGCAG | 1 cut(s) | 1257 |
| BshFI | GGCC | 4 cut(s) | 289, 518, 1037, 1475 |
| BsiHKAI | GWGCWC | 2 cut(s) | 751, 1708 |
| BslFI | GGGAC | 1 cut(s) | 1076 |
| BslI | CCNNNNNNNGG | 6 cut(s) | 622, 1059, 1283, 1579, 2442, 2478 |
| BsmAI | GTCTC | 9 cut(s) | 60, 204, 221, 278, 1017, 1161, 1235, 1246, 2368 |
| BsmBI | CGTCTC | 3 cut(s) | 278, 1235, 2368 |
| BsmFI | GGGAC | 1 cut(s) | 1076 |
| BsnI | GGCC | 4 cut(s) | 289, 518, 1037, 1475 |
| Bso31I | GGTCTC | 4 cut(s) | 60, 204, 1161, 1246 |
| Bsp1286I | GDGCHC | 3 cut(s) | 751, 1708, 2286 |
| Bsp143I | GATC | 9 cut(s) | 355, 770, 934, 941, 1727, 1898, 2008, 2033, 2075 |
| BspACI | CCGC | 5 cut(s) | 5, 554, 1000, 1060, 1511 |
| BspANI | GGCC | 4 cut(s) | 289, 518, 1037, 1475 |
| BspCNI | CTCAG | 3 cut(s) | 577, 1153, 1534 |
| BspLI | GGNNCC | 1 cut(s) | 2283 |
| BspMAI | CTGCAG | 4 cut(s) | 390, 822, 1347, 1779 |
| BspOI | GCTAGC | 1 cut(s) | 1107 |
| BspPI | GGATC | 3 cut(s) | 363, 2041, 2083 |
| BspTI | CTTAAG | 5 cut(s) | 125, 914, 1871, 2048, 2426 |
| BspTNI | GGTCTC | 4 cut(s) | 60, 204, 1161, 1246 |
| BsrDI | GCAATG | 3 cut(s) | 299, 788, 1745 |
| BsrI | ACTGG | 7 cut(s) | 441, 519, 872, 1398, 1476, 1988, 2162 |
| BssECI | CCNNGG | 6 cut(s) | 252, 450, 451, 1209, 1407, 1408 |
| BssMI | GATC | 9 cut(s) | 355, 770, 934, 941, 1727, 1898, 2008, 2033, 2075 |
| BssT1I | CCWWGG | 2 cut(s) | 252, 1209 |
| Bst2UI | CCWGG | 6 cut(s) | 47, 92, 452, 1039, 1260, 1409 |
| Bst4CI | ACNGT | 2 cut(s) | 54, 2222 |
| Bst6I | CTCTTC | 1 cut(s) | 2316 |
| BstAFI | CTTAAG | 5 cut(s) | 125, 914, 1871, 2048, 2426 |
| BstC8I | GCNNGC | 8 cut(s) | 78, 242, 287, 1035, 1105, 2519, 2523, 2575 |
| BstDEI | CTNAG | 3 cut(s) | 585, 1161, 1542 |
| BstENI | CCTNNNNNAGG | 1 cut(s) | 1281 |
| BstKTI | GATC | 9 cut(s) | 358, 773, 937, 944, 1730, 1901, 2011, 2036, 2078 |
| BstMAI | GTCTC | 9 cut(s) | 60, 204, 221, 278, 1017, 1161, 1235, 1246, 2368 |
| BstMBI | GATC | 9 cut(s) | 355, 770, 934, 941, 1727, 1898, 2008, 2033, 2075 |
| BstMWI | GCNNNNNNNGC | 7 cut(s) | 493, 785, 1057, 1450, 1742, 1991, 2428 |
| BstNI | CCWGG | 6 cut(s) | 47, 92, 452, 1039, 1260, 1409 |
| BstNSI | RCATGY | 1 cut(s) | 1923 |
| BstSCI | CCNGG | 6 cut(s) | 45, 90, 450, 1037, 1258, 1407 |
| BstSFI | CTRYAG | 6 cut(s) | 386, 818, 1343, 1775, 2001, 2175 |
| BstV2I | GAAGAC | 5 cut(s) | 549, 897, 1506, 1854, 2187 |
| BstX2I | RGATCY | 2 cut(s) | 355, 2008 |
| BstYI | RGATCY | 2 cut(s) | 355, 2008 |
| Bsu36I | CCTNAGG | 1 cut(s) | 1161 |
| BsuI | GTATCC | 2 cut(s) | 619, 1576 |
| BsuRI | GGCC | 4 cut(s) | 289, 518, 1037, 1475 |
| BtgZI | GCGATG | 2 cut(s) | 49, 1006 |
| BtsIMutI | CAGTG | 4 cut(s) | 448, 836, 1405, 1793 |
| Cac8I | GCNNGC | 8 cut(s) | 78, 242, 287, 1035, 1105, 2519, 2523, 2575 |
| CaiI | CAGNNNCTG | 5 cut(s) | 584, 950, 1541, 1907, 2084 |
| Cfr13I | GGNCC | 3 cut(s) | 88, 288, 1245 |
| Csp6I | GTAC | 7 cut(s) | 97, 589, 612, 1178, 1189, 1546, 1569 |
| CviQI | GTAC | 7 cut(s) | 97, 589, 612, 1178, 1189, 1546, 1569 |
| DdeI | CTNAG | 3 cut(s) | 585, 1161, 1542 |
| DpnI | GATC | 9 cut(s) | 357, 772, 936, 943, 1729, 1900, 2010, 2035, 2077 |
| DpnII | GATC | 9 cut(s) | 355, 770, 934, 941, 1727, 1898, 2008, 2033, 2075 |
| EaeI | YGGCCR | 2 cut(s) | 516, 1473 |
| Eam1104I | CTCTTC | 1 cut(s) | 2316 |
| EarI | CTCTTC | 1 cut(s) | 2316 |
| Eco130I | CCWWGG | 2 cut(s) | 252, 1209 |
| Eco147I | AGGCCT | 1 cut(s) | 1037 |
| Eco24I | GRGCYC | 1 cut(s) | 2286 |
| Eco31I | GGTCTC | 4 cut(s) | 60, 204, 1161, 1246 |
| Eco47I | GGWCC | 2 cut(s) | 88, 1245 |
| Eco57I | CTGAAG | 9 cut(s) | 399, 399, 450, 1299, 1356, 1356, 1407, 1980, 2600 |
| Eco81I | CCTNAGG | 1 cut(s) | 1161 |
| EcoNI | CCTNNNNNAGG | 1 cut(s) | 1281 |
| EcoRII | CCWGG | 6 cut(s) | 45, 90, 450, 1037, 1258, 1407 |
| EcoT14I | CCWWGG | 2 cut(s) | 252, 1209 |
| EcoT38I | GRGCYC | 1 cut(s) | 2286 |
| ErhI | CCWWGG | 2 cut(s) | 252, 1209 |
| Esp3I | CGTCTC | 3 cut(s) | 278, 1235, 2368 |
| FalI | AAGNNNNNCTT | 7 cut(s) | 777, 809, 1040, 1072, 1734, 1766, 2573 |
| FaqI | GGGAC | 1 cut(s) | 1076 |
| FauI | CCCGC | 1 cut(s) | 1053 |
| FauNDI | CATATG | 2 cut(s) | 513, 1470 |
| FriOI | GRGCYC | 1 cut(s) | 2286 |
| FspBI | CTAG | 3 cut(s) | 500, 1104, 1457 |
| GsaI | CCCAGC | 1 cut(s) | 354 |
| GsuI | CTGGAG | 5 cut(s) | 29, 209, 245, 1166, 1971 |
| HaeIII | GGCC | 4 cut(s) | 289, 518, 1037, 1475 |
| HincII | GTYRAC | 1 cut(s) | 263 |
| HindII | GTYRAC | 1 cut(s) | 263 |
| HindIII | AAGCTT | 4 cut(s) | 215, 338, 1295, 2420 |
| HphI | GGTGA | 9 cut(s) | 724, 728, 1681, 1685, 1988, 2028, 2202, 2341, 2401 |
| Hpy166II | GTNNAC | 5 cut(s) | 263, 436, 1393, 1935, 2112 |
| Hpy188I | TCNGA | 7 cut(s) | 753, 1710, 1916, 2267, 2342, 2458, 2530 |
| Hpy188III | TCNNGA | 9 cut(s) | 30, 188, 224, 620, 1086, 1145, 1160, 1577, 2012 |
| Hpy8I | GTNNAC | 5 cut(s) | 263, 436, 1393, 1935, 2112 |
| Hpy99I | CGWCG | 3 cut(s) | 15, 28, 31 |
| HpyCH4III | ACNGT | 2 cut(s) | 54, 2222 |
| HpyCH4IV | ACGT | 3 cut(s) | 1187, 2096, 2270 |
| HpyF10VI | GCNNNNNNNGC | 7 cut(s) | 493, 785, 1057, 1450, 1742, 1991, 2428 |
| HpyF3I | CTNAG | 3 cut(s) | 585, 1161, 1542 |
| HpySE526I | ACGT | 3 cut(s) | 1187, 2096, 2270 |
| Kzo9I | GATC | 9 cut(s) | 355, 770, 934, 941, 1727, 1898, 2008, 2033, 2075 |
| LmnI | GCTCC | 3 cut(s) | 282, 1990, 2281 |
| MaeI | CTAG | 3 cut(s) | 500, 1104, 1457 |
| MaeII | ACGT | 3 cut(s) | 1187, 2096, 2270 |
| MaeIII | GTNAC | 6 cut(s) | 170, 370, 676, 730, 1327, 1633 |
| MalI | GATC | 9 cut(s) | 357, 772, 936, 943, 1729, 1900, 2010, 2035, 2077 |
| MboI | GATC | 9 cut(s) | 355, 770, 934, 941, 1727, 1898, 2008, 2033, 2075 |
| MfeI | CAATTG | 2 cut(s) | 277, 2540 |
| MflI | RGATCY | 2 cut(s) | 355, 2008 |
| MhlI | GDGCHC | 3 cut(s) | 751, 1708, 2286 |
| MlsI | TGGCCA | 2 cut(s) | 518, 1475 |
| MluNI | TGGCCA | 2 cut(s) | 518, 1475 |
| MlyI | GAGTC | 3 cut(s) | 24, 1940, 2117 |
| MmeI | TCCRAC | 2 cut(s) | 966, 2427 |
| Mox20I | TGGCCA | 2 cut(s) | 518, 1475 |
| MroXI | GAANNNNTTC | 2 cut(s) | 867, 2157 |
| MscI | TGGCCA | 2 cut(s) | 518, 1475 |
| MslI | CAYNNNNRTG | 8 cut(s) | 441, 636, 801, 1398, 1593, 1758, 2067, 2241 |
| Msp20I | TGGCCA | 2 cut(s) | 518, 1475 |
| MspA1I | CMGCKG | 3 cut(s) | 581, 1538, 2000 |
| MspCI | CTTAAG | 5 cut(s) | 125, 914, 1871, 2048, 2426 |
| MspR9I | CCNGG | 6 cut(s) | 47, 92, 452, 1039, 1260, 1409 |
| MunI | CAATTG | 2 cut(s) | 277, 2540 |
| MvaI | CCWGG | 6 cut(s) | 47, 92, 452, 1039, 1260, 1409 |
| MwoI | GCNNNNNNNGC | 7 cut(s) | 493, 785, 1057, 1450, 1742, 1991, 2428 |
| NdeI | CATATG | 2 cut(s) | 513, 1470 |
| NdeII | GATC | 9 cut(s) | 355, 770, 934, 941, 1727, 1898, 2008, 2033, 2075 |
| NheI | GCTAGC | 1 cut(s) | 1103 |
| NlaIV | GGNNCC | 1 cut(s) | 2283 |
| NmuCI | GTSAC | 2 cut(s) | 730, 1633 |
| NspI | RCATGY | 1 cut(s) | 1923 |
| OliI | CACNNNNGTG | 2 cut(s) | 441, 1398 |
| PasI | CCCWGGG | 2 cut(s) | 451, 1408 |
| PceI | AGGCCT | 1 cut(s) | 1037 |
| PdmI | GAANNNNTTC | 2 cut(s) | 867, 2157 |
| PfeI | GAWTC | 9 cut(s) | 446, 754, 863, 974, 1403, 1711, 1979, 2153, 2207 |
| PfoI | TCCNGGA | 1 cut(s) | 45 |
| PleI | GAGTC | 3 cut(s) | 23, 1939, 2116 |
| PpsI | GAGTC | 3 cut(s) | 23, 1939, 2116 |
| Psp6I | CCWGG | 6 cut(s) | 45, 90, 450, 1037, 1258, 1407 |
| PspFI | CCCAGC | 1 cut(s) | 350 |
| PspGI | CCWGG | 6 cut(s) | 45, 90, 450, 1037, 1258, 1407 |
| PspN4I | GGNNCC | 1 cut(s) | 2283 |
| PspPI | GGNCC | 3 cut(s) | 88, 288, 1245 |
| PstI | CTGCAG | 4 cut(s) | 390, 822, 1347, 1779 |
| PstNI | CAGNNNCTG | 5 cut(s) | 584, 950, 1541, 1907, 2084 |
| PsuI | RGATCY | 2 cut(s) | 355, 2008 |
| PvuII | CAGCTG | 3 cut(s) | 581, 1538, 2000 |
| RsaI | GTAC | 7 cut(s) | 98, 590, 613, 1179, 1190, 1547, 1570 |
| RsaNI | GTAC | 7 cut(s) | 97, 589, 612, 1178, 1189, 1546, 1569 |
| RseI | CAYNNNNRTG | 8 cut(s) | 441, 636, 801, 1398, 1593, 1758, 2067, 2241 |
| Sau3AI | GATC | 9 cut(s) | 355, 770, 934, 941, 1727, 1898, 2008, 2033, 2075 |
| Sau96I | GGNCC | 3 cut(s) | 88, 288, 1245 |
| SchI | GAGTC | 3 cut(s) | 24, 1940, 2117 |
| ScrFI | CCNGG | 6 cut(s) | 47, 92, 452, 1039, 1260, 1409 |
| SduI | GDGCHC | 3 cut(s) | 751, 1708, 2286 |
| SfcI | CTRYAG | 6 cut(s) | 386, 818, 1343, 1775, 2001, 2175 |
| SinI | GGWCC | 2 cut(s) | 88, 1245 |
| SmiMI | CAYNNNNRTG | 8 cut(s) | 441, 636, 801, 1398, 1593, 1758, 2067, 2241 |
| SmlI | CTYRAG | 7 cut(s) | 125, 321, 914, 1871, 2012, 2048, 2426 |
| SmoI | CTYRAG | 7 cut(s) | 125, 321, 914, 1871, 2012, 2048, 2426 |
| SseBI | AGGCCT | 1 cut(s) | 1037 |
| SsiI | CCGC | 5 cut(s) | 5, 554, 1000, 1060, 1511 |
| SspI | AATATT | 1 cut(s) | 1223 |
| SspMI | CTAG | 3 cut(s) | 500, 1104, 1457 |
| StuI | AGGCCT | 1 cut(s) | 1037 |
| StyD4I | CCNGG | 6 cut(s) | 45, 90, 450, 1037, 1258, 1407 |
| StyI | CCWWGG | 2 cut(s) | 252, 1209 |
| TaaI | ACNGT | 2 cut(s) | 54, 2222 |
| TaiI | ACGT | 3 cut(s) | 1190, 2099, 2273 |
| TaqI | TCGA | 3 cut(s) | 13, 773, 1730 |
| TfiI | GAWTC | 9 cut(s) | 446, 754, 863, 974, 1403, 1711, 1979, 2153, 2207 |
| TscAI | CASTG | 4 cut(s) | 448, 843, 1405, 1800 |
| TseFI | GTSAC | 2 cut(s) | 730, 1633 |
| Tsp45I | GTSAC | 2 cut(s) | 730, 1633 |
| TspGWI | ACGGA | 7 cut(s) | 260, 326, 712, 1217, 1669, 2369, 2392 |
| TspRI | CASTG | 4 cut(s) | 448, 843, 1405, 1800 |
| Vha464I | CTTAAG | 5 cut(s) | 125, 914, 1871, 2048, 2426 |
| VpaK11BI | GGWCC | 2 cut(s) | 88, 1245 |
| XagI | CCTNNNNNAGG | 1 cut(s) | 1281 |
| XapI | RAATTY | 4 cut(s) | 701, 1312, 1658, 1820 |
| XceI | RCATGY | 1 cut(s) | 1923 |
| XcmI | CCANNNNNNNNNTGG | 2 cut(s) | 458, 1415 |
| XmnI | GAANNNNTTC | 2 cut(s) | 867, 2157 |
| XspI | CTAG | 3 cut(s) | 500, 1104, 1457 |