Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_ssc0000204.1

Orthogroup ID

OG0016319

Physical Location & Seq

Genomic Coordinates Reverse (-)

51276 .. 53908

Gene Structure 2633 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_ssc0000204.1_g000013.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 618 bp

atggcggttcgtcgagtcggttcgtcgtcgggaatgtcagccctccaggaacggtctctccacatcgccgatttgcaggcgtggatggaccaggcgtacttcgttaatgactgcttcccagagcttaagggagagattgtgagtgcaaaatttattgttaagaaatcgggttactgctatggttttctggagtttaggtctcacaaggtagcgaagcttgttctggagacatacaatggcaagcagatgcccaaggcgtgtcaacatttccgtctcaattggagcaggcccatgagggcattgcaaactacggatgcttctcaaggagggaattacaagcttgtagttgctggggatctgccgaaggatgttactgctgaagaactgcagcagcactttagaacccattacccttcagttaaggatgctgaagttcacaccagtgaatcccaggggttgtatggtgttattacatttgcaaaagagcatgaaaggcatctagcatcaattcatatggccagtcaatgttttaggaggacagaagacggcaaaccgcatcatttcttctataaagatacagctgctgagtaccagagaggtatgtgtcctagttactag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

RRM_1

Protein Analysis

205

Amino Acids

23.4

Weight (kDa)

8.74

Isoelectric Point (pI)

53.04

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0016319)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_4g33510 FvH4_4g33510 FvH4_4g33510
rosa_chinensis	RchiOBHm_Chr4g0442831
rosa_laevigata	RLG00000005979
rosa_multiflora	Rmu_co8507573.1_g000001 Rmu_sc0002303.1_g000001 Rmu_sc0034991.1_g000001 Rmu_ssc0000204.1_g000013
rosa_roxburghii	Rroxscaffold_5G00383630
rosa_rugosa	Rorug04G0343500
rosa_samantha	Rh4AG396100 Rh4BG409000 Rh4CG424500 Rh4DG403000

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	2 cut(s)	5, 554
AclWI	GGATC	1 cut(s)	363
AcoI	YGGCCR	1 cut(s)	516
AcsI	RAATTY	1 cut(s)	149
AcuI	CTGAAG	3 cut(s)	399, 399, 450
AfaI	GTAC	2 cut(s)	98, 590
AflII	CTTAAG	1 cut(s)	125
AjnI	CCWGG	3 cut(s)	45, 90, 450
AleI	CACNNNNGTG	1 cut(s)	441
AloI	GAACNNNNNNTCC	2 cut(s)	42, 74
AluBI	AGCT	4 cut(s)	124, 217, 340, 581
AluI	AGCT	4 cut(s)	124, 217, 340, 581
Alw26I	GTCTC	4 cut(s)	60, 204, 221, 278
AlwI	GGATC	1 cut(s)	363
AlwNI	CAGNNNCTG	1 cut(s)	584
AoxI	GGCC	2 cut(s)	287, 516
ApeKI	GCWGC	3 cut(s)	388, 391, 581
ApoI	RAATTY	1 cut(s)	149
AspS9I	GGNCC	2 cut(s)	88, 288
AvaII	GGWCC	1 cut(s)	88
BalI	TGGCCA	1 cut(s)	518
BbsI	GAAGAC	1 cut(s)	549
BbvI	GCAGC	3 cut(s)	400, 403, 568
BccI	CCATC	1 cut(s)	79
BceAI	ACGGC	1 cut(s)	562
BciT130I	CCWGG	3 cut(s)	47, 92, 452
BcoDI	GTCTC	4 cut(s)	60, 204, 221, 278
BfaI	CTAG	3 cut(s)	500, 609, 616
BfmI	CTRYAG	1 cut(s)	386
BfrI	CTTAAG	1 cut(s)	125
BisI	GCNGC	3 cut(s)	389, 392, 582
BlsI	GCNGC	3 cut(s)	390, 393, 583
Bme1390I	CCNGG	3 cut(s)	47, 92, 452
Bme18I	GGWCC	1 cut(s)	88
BmgT120I	GGNCC	2 cut(s)	88, 288
BmrFI	CCNGG	3 cut(s)	47, 92, 452
BmsI	GCATC	6 cut(s)	237, 304, 415, 505, 512, 565
BpiI	GAAGAC	1 cut(s)	549
BpmI	CTGGAG	3 cut(s)	29, 209, 245
BpuEI	CTTGAG	1 cut(s)	306
BsaI	GGTCTC	2 cut(s)	60, 204
BsaJI	CCNNGG	3 cut(s)	252, 450, 451
BsaXI	ACNNNNNCTCC	6 cut(s)	42, 72, 123, 153, 182, 212
Bse1I	ACTGG	2 cut(s)	441, 519
Bse3DI	GCAATG	1 cut(s)	299
BseBI	CCWGG	3 cut(s)	47, 92, 452
BseDI	CCNNGG	3 cut(s)	252, 450, 451
BseGI	GGATG	4 cut(s)	90, 319, 373, 430
BseMI	GCAATG	1 cut(s)	299
BseMII	CTCAG	1 cut(s)	576
BseNI	ACTGG	2 cut(s)	441, 519
BseXI	GCAGC	3 cut(s)	400, 403, 568
BseYI	CCCAGC	1 cut(s)	350
BshFI	GGCC	2 cut(s)	289, 518
BsmAI	GTCTC	4 cut(s)	60, 204, 221, 278
BsmBI	CGTCTC	1 cut(s)	278
BsnI	GGCC	2 cut(s)	289, 518
Bso31I	GGTCTC	2 cut(s)	60, 204
Bsp143I	GATC	1 cut(s)	355
BspACI	CCGC	2 cut(s)	5, 554
BspANI	GGCC	2 cut(s)	289, 518
BspCNI	CTCAG	1 cut(s)	577
BspMAI	CTGCAG	1 cut(s)	390
BspPI	GGATC	1 cut(s)	363
BspTI	CTTAAG	1 cut(s)	125
BspTNI	GGTCTC	2 cut(s)	60, 204
BsrDI	GCAATG	1 cut(s)	299
BsrI	ACTGG	2 cut(s)	441, 519
BssECI	CCNNGG	3 cut(s)	252, 450, 451
BssMI	GATC	1 cut(s)	355
BssT1I	CCWWGG	1 cut(s)	252
Bst2UI	CCWGG	3 cut(s)	47, 92, 452
Bst4CI	ACNGT	1 cut(s)	54
BstAFI	CTTAAG	1 cut(s)	125
BstC8I	GCNNGC	3 cut(s)	78, 242, 287
BstDEI	CTNAG	1 cut(s)	585
BstF5I	GGATG	4 cut(s)	90, 319, 373, 430
BstKTI	GATC	1 cut(s)	358
BstMAI	GTCTC	4 cut(s)	60, 204, 221, 278
BstMBI	GATC	1 cut(s)	355
BstMWI	GCNNNNNNNGC	1 cut(s)	493
BstNI	CCWGG	3 cut(s)	47, 92, 452
BstSCI	CCNGG	3 cut(s)	45, 90, 450
BstSFI	CTRYAG	1 cut(s)	386
BstV1I	GCAGC	3 cut(s)	400, 403, 568
BstV2I	GAAGAC	1 cut(s)	549
BstX2I	RGATCY	1 cut(s)	355
BstYI	RGATCY	1 cut(s)	355
BsuRI	GGCC	2 cut(s)	289, 518
BtgZI	GCGATG	1 cut(s)	49
BtsCI	GGATG	4 cut(s)	90, 319, 373, 430
BtsIMutI	CAGTG	1 cut(s)	448
Cac8I	GCNNGC	3 cut(s)	78, 242, 287
CaiI	CAGNNNCTG	1 cut(s)	584
Cfr13I	GGNCC	2 cut(s)	88, 288
Csp6I	GTAC	2 cut(s)	97, 589
CviAII	CATG	2 cut(s)	292, 488
CviJI	RGCY	7 cut(s)	41, 124, 217, 289, 340, 518, 581
CviKI_1	RGCY	7 cut(s)	41, 124, 217, 289, 340, 518, 581
CviQI	GTAC	2 cut(s)	97, 589
DdeI	CTNAG	1 cut(s)	585
DpnI	GATC	1 cut(s)	357
DpnII	GATC	1 cut(s)	355
EaeI	YGGCCR	1 cut(s)	516
Eco130I	CCWWGG	1 cut(s)	252
Eco31I	GGTCTC	2 cut(s)	60, 204
Eco47I	GGWCC	1 cut(s)	88
Eco57I	CTGAAG	3 cut(s)	399, 399, 450
EcoRII	CCWGG	3 cut(s)	45, 90, 450
EcoT14I	CCWWGG	1 cut(s)	252
ErhI	CCWWGG	1 cut(s)	252
Esp3I	CGTCTC	1 cut(s)	278
FaeI	CATG	2 cut(s)	295, 491
FaiI	YATR	9 cut(s)	180, 232, 293, 462, 489, 513, 515, 570, 602
FatI	CATG	2 cut(s)	291, 487
FauNDI	CATATG	1 cut(s)	513
Fnu4HI	GCNGC	3 cut(s)	389, 392, 582
FokI	GGATG	4 cut(s)	97, 326, 380, 437
Fsp4HI	GCNGC	3 cut(s)	389, 392, 582
FspBI	CTAG	3 cut(s)	500, 609, 616
GluI	GCNGC	3 cut(s)	389, 392, 582
GsaI	CCCAGC	1 cut(s)	354
GsuI	CTGGAG	3 cut(s)	29, 209, 245
HaeIII	GGCC	2 cut(s)	289, 518
Hin1II	CATG	2 cut(s)	295, 491
HincII	GTYRAC	1 cut(s)	263
HindII	GTYRAC	1 cut(s)	263
HindIII	AAGCTT	2 cut(s)	215, 338
HinfI	GANTC	2 cut(s)	15, 446
Hpy166II	GTNNAC	2 cut(s)	263, 436
Hpy188III	TCNNGA	3 cut(s)	30, 188, 224
Hpy8I	GTNNAC	2 cut(s)	263, 436
Hpy99I	CGWCG	3 cut(s)	15, 28, 31
HpyAV	CCTTC	2 cut(s)	358, 423
HpyCH4III	ACNGT	1 cut(s)	54
HpyCH4V	TGCA	5 cut(s)	76, 146, 304, 388, 479
HpyF10VI	GCNNNNNNNGC	1 cut(s)	493
HpyF3I	CTNAG	1 cut(s)	585
Hsp92II	CATG	2 cut(s)	295, 491
Kzo9I	GATC	1 cut(s)	355
LmnI	GCTCC	1 cut(s)	282
Lsp1109I	GCAGC	3 cut(s)	400, 403, 568
LweI	GCATC	6 cut(s)	237, 304, 415, 505, 512, 565
MaeI	CTAG	3 cut(s)	500, 609, 616
MaeIII	GTNAC	3 cut(s)	170, 370, 611
MalI	GATC	1 cut(s)	357
MboI	GATC	1 cut(s)	355
MboII	GAAGA	3 cut(s)	392, 554, 556
MfeI	CAATTG	1 cut(s)	277
MflI	RGATCY	1 cut(s)	355
MlsI	TGGCCA	1 cut(s)	518
MluCI	AATT	4 cut(s)	149, 277, 331, 507
MluNI	TGGCCA	1 cut(s)	518
MlyI	GAGTC	1 cut(s)	24
MnlI	CCTC	5 cut(s)	53, 288, 320, 528, 590
Mox20I	TGGCCA	1 cut(s)	518
MscI	TGGCCA	1 cut(s)	518
MseI	TTAA	4 cut(s)	105, 126, 159, 420
MslI	CAYNNNNRTG	1 cut(s)	441
Msp20I	TGGCCA	1 cut(s)	518
MspA1I	CMGCKG	1 cut(s)	581
MspCI	CTTAAG	1 cut(s)	125
MspR9I	CCNGG	3 cut(s)	47, 92, 452
MunI	CAATTG	1 cut(s)	277
MvaI	CCWGG	3 cut(s)	47, 92, 452
MwoI	GCNNNNNNNGC	1 cut(s)	493
NdeI	CATATG	1 cut(s)	513
NdeII	GATC	1 cut(s)	355
NlaIII	CATG	2 cut(s)	295, 491
OliI	CACNNNNGTG	1 cut(s)	441
PasI	CCCWGGG	1 cut(s)	451
PfeI	GAWTC	1 cut(s)	446
PfoI	TCCNGGA	1 cut(s)	45
PkrI	GCNGC	3 cut(s)	390, 393, 583
PleI	GAGTC	1 cut(s)	23
PpsI	GAGTC	1 cut(s)	23
Psp6I	CCWGG	3 cut(s)	45, 90, 450
PspFI	CCCAGC	1 cut(s)	350
PspGI	CCWGG	3 cut(s)	45, 90, 450
PspPI	GGNCC	2 cut(s)	88, 288
PstI	CTGCAG	1 cut(s)	390
PstNI	CAGNNNCTG	1 cut(s)	584
PsuI	RGATCY	1 cut(s)	355
PvuII	CAGCTG	1 cut(s)	581
RsaI	GTAC	2 cut(s)	98, 590
RsaNI	GTAC	2 cut(s)	97, 589
RseI	CAYNNNNRTG	1 cut(s)	441
SaqAI	TTAA	4 cut(s)	105, 126, 159, 420
SatI	GCNGC	3 cut(s)	389, 392, 582
Sau3AI	GATC	1 cut(s)	355
Sau96I	GGNCC	2 cut(s)	88, 288
SchI	GAGTC	1 cut(s)	24
ScrFI	CCNGG	3 cut(s)	47, 92, 452
SetI	ASST	7 cut(s)	126, 200, 210, 219, 342, 583, 601
SfaNI	GCATC	6 cut(s)	237, 304, 415, 505, 512, 565
SfcI	CTRYAG	1 cut(s)	386
SinI	GGWCC	1 cut(s)	88
SmiMI	CAYNNNNRTG	1 cut(s)	441
SmlI	CTYRAG	2 cut(s)	125, 321
SmoI	CTYRAG	2 cut(s)	125, 321
Sse9I	AATT	4 cut(s)	149, 277, 331, 507
SsiI	CCGC	2 cut(s)	5, 554
SspMI	CTAG	3 cut(s)	500, 609, 616
StyD4I	CCNGG	3 cut(s)	45, 90, 450
StyI	CCWWGG	1 cut(s)	252
TaaI	ACNGT	1 cut(s)	54
TaqI	TCGA	1 cut(s)	13
TasI	AATT	4 cut(s)	149, 277, 331, 507
TfiI	GAWTC	1 cut(s)	446
Tru1I	TTAA	4 cut(s)	105, 126, 159, 420
Tru9I	TTAA	4 cut(s)	105, 126, 159, 420
TscAI	CASTG	1 cut(s)	448
TseI	GCWGC	3 cut(s)	388, 391, 581
TspDTI	ATGAA	2 cut(s)	500, 504
TspGWI	ACGGA	2 cut(s)	260, 326
TspRI	CASTG	1 cut(s)	448
Vha464I	CTTAAG	1 cut(s)	125
VpaK11BI	GGWCC	1 cut(s)	88
XapI	RAATTY	1 cut(s)	149
XcmI	CCANNNNNNNNNTGG	1 cut(s)	458
XspI	CTAG	3 cut(s)	500, 609, 616

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.