RLG00000005979

RNA binding

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr2
OG0016319
Physical Location & Seq
Reverse (-)
3254685 .. 3263046
8362 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000005979

Sequence Viewer

Length: 2751 bp
ATGACGGTTCTTCAAGCCGGTTCGTCGTCGGGAATGTCAGCCGTCCAGGAACGGTCTCTCCATATCGCCGATTTGCAGGCGTGGATGGACAAGGCGTACTTCGTTAATGACTGCTTCCCAGAGTTTAAGGGAGAGATTGTGAGTGCAAGGTTTATTGGTGAGAAATCAAGTTACTGCTATGGTTTTCTGGAGTTTAGGTCTCACAAGGTAGCGAAGCTTGTTCTGGAGACGTACAATGGCAAGCAGATGCCTAAGGCGTGTCAACATTTCCGTCTCAATTGGAGCAGGCGCAAGAGGTCATTGCAAACTACGGATGCTTCTCAAGGAGGGAATTACAAGCTTGTAGTTGCTGGGGATTTGCCGAAGGATGTTACTGCTGAAGAACTGCGGCGGCACTTTAGAACCTATTACCCTTCGGTTACGGATGCTGAAGTTCACATCAGTGAATCCCAGGGGTTGTATGGTGTTATTACATTTGCAAAAGAGCATGAAAGGCATCTAGCATCAATTCATATGGACAGGCAATGTTTTAGGAGGAAAGAAGACGGCAAACCGCATCATTTCTTCTATAAAGATACAGCTGCTGAGTACCAGAGAGCTGCCTACCCAAGTACCCATCCCGAGGATGCACATCCAAACGGTTCAACAATTTACATTCAAAACTTGGAAAAGGATGTTACTGAAGGGTTCTTGCTACATAAATTTTCCCCCTATGGTGAGGTTACTAAAGTCACCATAAGGGGATGTGCTCTGATTCAGTTTGTTGATAGATCGAGTGGTGATGAAGCATTGCTTCACATGAATGATGACCTTATTCTGCAGAATAGCTTACTTCCACTGACCATGAGAAAATATGAAAGATCAGTATCTGGGTTTAGAGCGTGTGAGGAGAGGAAGCAAGAAAACGATGAATCTGTTCCAGTACAGCAGTCATCAATGACGGTTCTTCAAGTTGGTTCGTCGTCGGGAATGTCAGCCATCCAGGAACGGTCTCTCCATATGGCCGATTTGCAGGCGTGGATGGACAAGGCGTACTTCGTTAATGACTGCTTCCCAGAGTTTAAGGGAGAGATTGTGAGTGCAAGGTTTATTGGTGAGAAATCAAGTTACTGCTATGGTTTTCTGGAGTTTAGGTCTCACAAGGTAGCGAAGCTTGTTCTGGAGACGTACAATGGCAAGCAGATGCCCAAGGCGTGTCAACATTTTCATCTCAATTGGAGCAGGCGCAAGAGGTCATTGCAAACTACGGATGCTTCTCAAGGAGGGAATTACAAGCTTGTAGTTGCTGGGGATTTGCCGGAGGATGTTACTGCTGAAGAACTGCAGCGGCACTTTAGAACCTATTACCCTTCAGTTAAGGATGCTGAAGTTCACACCAGTGAATCCCAGGGGTTGTATGGCGTTATTACATTTGCAAAAGAGCATGAAAGGCATCTAGCATCAATTCATATGGACAGGCAATGTTTTAGGAGGAAAGAAGACGGCAAACCGCATCATTTCTTCTATAAAGATACAGCTGCTGAGTACCAGAGAGCTGCCTACCCAAGTACGCATCCCGAGGATGCACATCCAAATGTTTCAACAATTTACATTCAAAACTTGGAAAAGGATGTTACCGAAGGGTTCTTGCTGCAGAAATTTTCCCCTTATGGTGTGATTTCTAAAGTCACCATAAGGGGATGTGCTCTGATTCAGTTTGTTGATAGATCGAGTGGTGATAAAGCATTGCTTCACATGAATGATGACCTTATTCTACAGAATAGCTTACTTCCACTGACCATGAGAAAATCAAATGATGAATCTGTTCCAGTAGCTTCATGTGTTGAAGACTTCAAGGAACTTACAGACCTTAAGGAATTAACCCATGAAGATGAAAGATCAATATCTGGGTTCAGAGCGTGTGAGGATGAGTCCACAGATGAAAAAATAACAGAGGAGAGGAAGCAAGAAAATGATGAATCTGTTCCAGTAGCTTCAGCTGTAGAAGACCTTGAGGAACCAACACATGGAGAATCACCGAATGACCTTAAGGAATTAACCCATGACGATGAAGGATCAGTATCTGGGTTTAGAACGTGTGAGGAGGAGTGCACAGATGAAAAAGCAGACGAGGGGAAGCAAGAAAATGATGAATCTGTTCCAGTAGCTTCATCTGTAGAAAACCTTGAGGAACGAACACATGGAGAATCACCGAAAGACTTTCAGGAATTAACCCATGAAGATGAAGGATTAGTATCTGGGTTCAGAACGTGTGAGGAGGAGTCCACAGATGAAAAAATAACAGAGGAGGGGCAGCAAGAAGAGGAGGTGAAACAAGTCCTAGATTCCTTGAGCCGGGAAGTAGATGAAGAAACACAAGCGGAAGTAGAGATAGCTAAAGAAGCTGGCTTGAAAAGGACTAGTGAAGGACAGAGACGGAGGAGGAAGTTGAAGAAGGCAAGGCAGAAGGAGAAAAAGAAGCTTCTTAAGCAAACCAATGAAGGGTTGGAGGCATCGGAAGGGCAGCAAACTAATGAAGGGTTGGAGGCATCAGAAGGGCAGCAAACTAATGAAGGGTTGGAGGCATCAGAAGGGCAGCAAACCAATGAAGGGTTTGAAGCATCAGAAGGGCAGCAAACCGATGAAGGGTTTGAAGCACCAGAAGGGCAGCAAACCAATGAAGGCTCGCAAGCATCAGAAGGGCATCAATTGGTCATCTCTTGGCTGTGGGATTTGTATGCGAGCCTGAAGCACTACTTGTTCGGCTGCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
RRM_1

Protein Analysis

917

Amino Acids

103.97

Weight (kDa)

5.12

Isoelectric Point (pI)

54.66

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
RRM_1 PF00076 529 - 587 6.6e-06 RNA recognition motif
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 2006
AciI CCGC 6 cut(s) 388, 391, 554, 1327, 1490, 2360
AclWI GGATC 1 cut(s) 2062
AcoI YGGCCR 1 cut(s) 1002
AcsI RAATTY 2 cut(s) 701, 1637
AcuI CTGAAG 8 cut(s) 399, 450, 702, 1335, 1335, 1386, 1959, 2747
AfaI GTAC 9 cut(s) 98, 233, 590, 613, 924, 1034, 1169, 1526, 1549
AfiI CCNNNNNNNGG 6 cut(s) 622, 2006, 2334, 2481, 2589, 2625
AflII CTTAAG 3 cut(s) 1850, 2027, 2465
AflIII ACRYGT 2 cut(s) 2075, 2249
AhlI ACTAGT 1 cut(s) 2399
AjnI CCWGG 4 cut(s) 45, 450, 981, 1386
AleI CACNNNNGTG 2 cut(s) 441, 1377
AloI GAACNNNNNNTCC 4 cut(s) 42, 74, 978, 1010
Alw21I GWGCWC 3 cut(s) 751, 1687, 2093
Alw26I GTCTC 8 cut(s) 60, 204, 221, 278, 996, 1140, 1157, 2407
Alw44I GTGCAC 1 cut(s) 2089
AlwI GGATC 1 cut(s) 2062
AlwNI CAGNNNCTG 4 cut(s) 584, 869, 1520, 2063
Ama87I CYCGRG 2 cut(s) 620, 1556
AoxI GGCC 1 cut(s) 1002
ApaLI GTGCAC 1 cut(s) 2089
ApoI RAATTY 2 cut(s) 701, 1637
Asp700I GAANNNNTTC 4 cut(s) 915, 1803, 1962, 2136
AspLEI GCGC 2 cut(s) 291, 1227
AsuC2I CCSGG 1 cut(s) 2336
AvaI CYCGRG 2 cut(s) 620, 1556
AxyI CCTNAGG 1 cut(s) 252
BaeGI GKGCMC 1 cut(s) 2093
BaeI ACNNNNGTAYC 2 cut(s) 595, 628
BbsI GAAGAC 4 cut(s) 549, 1485, 1833, 1992
Bbv12I GWGCWC 3 cut(s) 751, 1687, 2093
BccI CCATC 4 cut(s) 79, 624, 986, 1015
BceAI ACGGC 3 cut(s) 26, 562, 1498
BciT130I CCWGG 4 cut(s) 47, 452, 983, 1388
BcnI CCSGG 1 cut(s) 2336
BcoDI GTCTC 8 cut(s) 60, 204, 221, 278, 996, 1140, 1157, 2407
BcuI ACTAGT 1 cut(s) 2399
BfaI CTAG 4 cut(s) 500, 1436, 2321, 2400
BfmI CTRYAG 6 cut(s) 818, 1322, 1631, 1754, 1980, 2154
BfrI CTTAAG 3 cut(s) 1850, 2027, 2465
Bme1390I CCNGG 5 cut(s) 47, 452, 983, 1388, 2336
BmeT110I CYCGRG 2 cut(s) 620, 1556
BmiI GGNNCC 1 cut(s) 1998
BmrFI CCNGG 5 cut(s) 47, 452, 983, 1388, 2336
BpiI GAAGAC 4 cut(s) 549, 1485, 1833, 1992
BpmI CTGGAG 4 cut(s) 209, 245, 1145, 1181
BpuEI CTTGAG 5 cut(s) 306, 1242, 2012, 2186, 2350
BpuMI CCSGG 1 cut(s) 2336
BsaBI GATNNNNATC 6 cut(s) 630, 865, 1566, 1882, 2059, 2233
BsaI GGTCTC 4 cut(s) 60, 204, 996, 1140
BsaJI CCNNGG 7 cut(s) 450, 451, 621, 1188, 1386, 1387, 1557
Bsc4I CCNNNNNNNGG 6 cut(s) 622, 2006, 2334, 2481, 2589, 2625
Bse118I RCCGGY 1 cut(s) 17
Bse1I ACTGG 5 cut(s) 920, 1377, 1808, 1967, 2141
Bse21I CCTNAGG 1 cut(s) 252
Bse3DI GCAATG 6 cut(s) 299, 530, 788, 1235, 1466, 1724
Bse8I GATNNNNATC 6 cut(s) 630, 865, 1566, 1882, 2059, 2233
BseBI CCWGG 4 cut(s) 47, 452, 983, 1388
BseDI CCNNGG 7 cut(s) 450, 451, 621, 1188, 1386, 1387, 1557
BseJI GATNNNNATC 6 cut(s) 630, 865, 1566, 1882, 2059, 2233
BseLI CCNNNNNNNGG 6 cut(s) 622, 2006, 2334, 2481, 2589, 2625
BseMI GCAATG 6 cut(s) 299, 530, 788, 1235, 1466, 1724
BseMII CTCAG 2 cut(s) 576, 1512
BseNI ACTGG 5 cut(s) 920, 1377, 1808, 1967, 2141
BseRI GAGGAG 9 cut(s) 902, 1949, 2096, 2099, 2270, 2273, 2300, 2318, 2434
BseSI GKGCMC 1 cut(s) 2093
BseYI CCCAGC 2 cut(s) 350, 1286
BshFI GGCC 1 cut(s) 1004
BsiHKAI GWGCWC 3 cut(s) 751, 1687, 2093
BsiHKCI CYCGRG 2 cut(s) 620, 1556
BsiSI CCGG 3 cut(s) 18, 1298, 2335
BslI CCNNNNNNNGG 6 cut(s) 622, 2006, 2334, 2481, 2589, 2625
BsmAI GTCTC 8 cut(s) 60, 204, 221, 278, 996, 1140, 1157, 2407
BsmBI CGTCTC 4 cut(s) 221, 278, 1157, 2407
BsnI GGCC 1 cut(s) 1004
Bso31I GGTCTC 4 cut(s) 60, 204, 996, 1140
BsoBI CYCGRG 2 cut(s) 620, 1556
Bsp1286I GDGCHC 3 cut(s) 751, 1687, 2093
Bsp143I GATC 5 cut(s) 770, 860, 1706, 1877, 2054
BspACI CCGC 6 cut(s) 388, 391, 554, 1327, 1490, 2360
BspANI GGCC 1 cut(s) 1004
BspCNI CTCAG 2 cut(s) 577, 1513
BspLI GGNNCC 1 cut(s) 1998
BspMAI CTGCAG 3 cut(s) 822, 1326, 1635
BspPI GGATC 1 cut(s) 2062
BspTI CTTAAG 3 cut(s) 1850, 2027, 2465
BspTNI GGTCTC 4 cut(s) 60, 204, 996, 1140
BsrDI GCAATG 6 cut(s) 299, 530, 788, 1235, 1466, 1724
BsrFI RCCGGY 1 cut(s) 17
BsrI ACTGG 5 cut(s) 920, 1377, 1808, 1967, 2141
BssAI RCCGGY 1 cut(s) 17
BssECI CCNNGG 7 cut(s) 450, 451, 621, 1188, 1386, 1387, 1557
BssMI GATC 5 cut(s) 770, 860, 1706, 1877, 2054
BssT1I CCWWGG 1 cut(s) 1188
Bst2UI CCWGG 4 cut(s) 47, 452, 983, 1388
Bst4CI ACNGT 5 cut(s) 7, 54, 641, 943, 990
Bst6I CTCTTC 1 cut(s) 2295
BstAFI CTTAAG 3 cut(s) 1850, 2027, 2465
BstDEI CTNAG 3 cut(s) 252, 585, 1521
BstHHI GCGC 2 cut(s) 291, 1227
BstKTI GATC 5 cut(s) 773, 863, 1709, 1880, 2057
BstMAI GTCTC 8 cut(s) 60, 204, 221, 278, 996, 1140, 1157, 2407
BstMBI GATC 5 cut(s) 770, 860, 1706, 1877, 2054
BstMWI GCNNNNNNNGC 4 cut(s) 493, 1429, 2381, 2467
BstNI CCWGG 4 cut(s) 47, 452, 983, 1388
BstSCI CCNGG 5 cut(s) 45, 450, 981, 1386, 2334
BstSFI CTRYAG 6 cut(s) 818, 1322, 1631, 1754, 1980, 2154
BstSLI GKGCMC 1 cut(s) 2093
BstV2I GAAGAC 4 cut(s) 549, 1485, 1833, 1992
Bsu36I CCTNAGG 1 cut(s) 252
BsuRI GGCC 1 cut(s) 1004
BtsIMutI CAGTG 4 cut(s) 448, 836, 1384, 1772
CaiI CAGNNNCTG 4 cut(s) 584, 869, 1520, 2063
CfoI GCGC 2 cut(s) 291, 1227
Cfr10I RCCGGY 1 cut(s) 17
Csp6I GTAC 9 cut(s) 97, 232, 589, 612, 923, 1033, 1168, 1525, 1548
CviQI GTAC 9 cut(s) 97, 232, 589, 612, 923, 1033, 1168, 1525, 1548
DdeI CTNAG 3 cut(s) 252, 585, 1521
DpnI GATC 5 cut(s) 772, 862, 1708, 1879, 2056
DpnII GATC 5 cut(s) 770, 860, 1706, 1877, 2054
EaeI YGGCCR 1 cut(s) 1002
Eam1104I CTCTTC 1 cut(s) 2295
EarI CTCTTC 1 cut(s) 2295
Eco130I CCWWGG 1 cut(s) 1188
Eco31I GGTCTC 4 cut(s) 60, 204, 996, 1140
Eco57I CTGAAG 8 cut(s) 399, 450, 702, 1335, 1335, 1386, 1959, 2747
Eco81I CCTNAGG 1 cut(s) 252
Eco88I CYCGRG 2 cut(s) 620, 1556
EcoRII CCWGG 4 cut(s) 45, 450, 981, 1386
EcoT14I CCWWGG 1 cut(s) 1188
ErhI CCWWGG 1 cut(s) 1188
Esp3I CGTCTC 4 cut(s) 221, 278, 1157, 2407
FalI AAGNNNNNCTT 9 cut(s) 83, 115, 777, 809, 1019, 1051, 1713, 1745, 2720
FauNDI CATATG 3 cut(s) 513, 999, 1449
FspBI CTAG 4 cut(s) 500, 1436, 2321, 2400
GlaI GCGC 2 cut(s) 290, 1226
GsaI CCCAGC 2 cut(s) 354, 1290
GsuI CTGGAG 4 cut(s) 209, 245, 1145, 1181
HaeIII GGCC 1 cut(s) 1004
HapII CCGG 3 cut(s) 18, 1298, 2335
HhaI GCGC 2 cut(s) 291, 1227
Hin6I GCGC 2 cut(s) 289, 1225
HinP1I GCGC 2 cut(s) 289, 1225
HincII GTYRAC 2 cut(s) 263, 1199
HindII GTYRAC 2 cut(s) 263, 1199
HindIII AAGCTT 5 cut(s) 215, 338, 1151, 1274, 2459
HpaII CCGG 3 cut(s) 18, 1298, 2335
Hpy166II GTNNAC 7 cut(s) 263, 436, 1199, 1372, 1914, 2091, 2265
Hpy188I TCNGA 9 cut(s) 753, 1689, 1895, 2246, 2497, 2533, 2569, 2605, 2677
Hpy188III TCNNGA 9 cut(s) 30, 188, 224, 620, 966, 1124, 1160, 1556, 2204
Hpy8I GTNNAC 7 cut(s) 263, 436, 1199, 1372, 1914, 2091, 2265
Hpy99I CGWCG 4 cut(s) 28, 31, 964, 967
HpyCH4III ACNGT 5 cut(s) 7, 54, 641, 943, 990
HpyCH4IV ACGT 4 cut(s) 230, 1166, 2075, 2249
HpyF10VI GCNNNNNNNGC 4 cut(s) 493, 1429, 2381, 2467
HpyF3I CTNAG 3 cut(s) 252, 585, 1521
HpySE526I ACGT 4 cut(s) 230, 1166, 2075, 2249
HspAI GCGC 2 cut(s) 289, 1225
Kzo9I GATC 5 cut(s) 770, 860, 1706, 1877, 2054
LmnI GCTCC 2 cut(s) 282, 1218
MaeI CTAG 4 cut(s) 500, 1436, 2321, 2400
MaeII ACGT 4 cut(s) 230, 1166, 2075, 2249
MalI GATC 5 cut(s) 772, 862, 1708, 1879, 2056
MboI GATC 5 cut(s) 770, 860, 1706, 1877, 2054
MfeI CAATTG 3 cut(s) 277, 1213, 2687
MhlI GDGCHC 3 cut(s) 751, 1687, 2093
MlyI GAGTC 2 cut(s) 1919, 2270
MmeI TCCRAC 3 cut(s) 2466, 2502, 2538
MroXI GAANNNNTTC 4 cut(s) 915, 1803, 1962, 2136
MslI CAYNNNNRTG 8 cut(s) 441, 801, 1377, 1572, 1737, 1869, 2046, 2220
MspA1I CMGCKG 4 cut(s) 581, 1327, 1517, 1979
MspCI CTTAAG 3 cut(s) 1850, 2027, 2465
MspI CCGG 3 cut(s) 18, 1298, 2335
MspR9I CCNGG 5 cut(s) 47, 452, 983, 1388, 2336
MunI CAATTG 3 cut(s) 277, 1213, 2687
MvaI CCWGG 4 cut(s) 47, 452, 983, 1388
MwoI GCNNNNNNNGC 4 cut(s) 493, 1429, 2381, 2467
NciI CCSGG 1 cut(s) 2336
NdeI CATATG 3 cut(s) 513, 999, 1449
NdeII GATC 5 cut(s) 770, 860, 1706, 1877, 2054
NlaIV GGNNCC 1 cut(s) 1998
NmuCI GTSAC 2 cut(s) 730, 1666
OliI CACNNNNGTG 2 cut(s) 441, 1377
PasI CCCWGGG 2 cut(s) 451, 1387
PdmI GAANNNNTTC 4 cut(s) 915, 1803, 1962, 2136
PflMI CCANNNNNTGG 1 cut(s) 2006
PfoI TCCNGGA 2 cut(s) 45, 981
PleI GAGTC 2 cut(s) 1918, 2269
PpsI GAGTC 2 cut(s) 1918, 2269
Psp6I CCWGG 4 cut(s) 45, 450, 981, 1386
PspFI CCCAGC 2 cut(s) 350, 1286
PspGI CCWGG 4 cut(s) 45, 450, 981, 1386
PspN4I GGNNCC 1 cut(s) 1998
PstI CTGCAG 3 cut(s) 822, 1326, 1635
PstNI CAGNNNCTG 4 cut(s) 584, 869, 1520, 2063
PvuII CAGCTG 3 cut(s) 581, 1517, 1979
RsaI GTAC 9 cut(s) 98, 233, 590, 613, 924, 1034, 1169, 1526, 1549
RsaNI GTAC 9 cut(s) 97, 232, 589, 612, 923, 1033, 1168, 1525, 1548
RseI CAYNNNNRTG 8 cut(s) 441, 801, 1377, 1572, 1737, 1869, 2046, 2220
Sau3AI GATC 5 cut(s) 770, 860, 1706, 1877, 2054
SchI GAGTC 2 cut(s) 1919, 2270
ScrFI CCNGG 5 cut(s) 47, 452, 983, 1388, 2336
SduI GDGCHC 3 cut(s) 751, 1687, 2093
SfcI CTRYAG 6 cut(s) 818, 1322, 1631, 1754, 1980, 2154
SmiMI CAYNNNNRTG 8 cut(s) 441, 801, 1377, 1572, 1737, 1869, 2046, 2220
SmlI CTYRAG 8 cut(s) 321, 1257, 1850, 1991, 2027, 2165, 2329, 2465
SmoI CTYRAG 8 cut(s) 321, 1257, 1850, 1991, 2027, 2165, 2329, 2465
SpeI ACTAGT 1 cut(s) 2399
SsiI CCGC 6 cut(s) 388, 391, 554, 1327, 1490, 2360
SspMI CTAG 4 cut(s) 500, 1436, 2321, 2400
StyD4I CCNGG 5 cut(s) 45, 450, 981, 1386, 2334
StyI CCWWGG 1 cut(s) 1188
TaaI ACNGT 5 cut(s) 7, 54, 641, 943, 990
TaiI ACGT 4 cut(s) 233, 1169, 2078, 2252
TaqI TCGA 2 cut(s) 773, 1709
TatI WGTACW 1 cut(s) 922
TauI GCSGC 3 cut(s) 391, 394, 1330
TscAI CASTG 4 cut(s) 448, 843, 1384, 1779
TseFI GTSAC 2 cut(s) 730, 1666
Tsp45I GTSAC 2 cut(s) 730, 1666
TspGWI ACGGA 5 cut(s) 260, 326, 437, 1262, 2431
TspRI CASTG 4 cut(s) 448, 843, 1384, 1779
Van91I CCANNNNNTGG 1 cut(s) 2006
Vha464I CTTAAG 3 cut(s) 1850, 2027, 2465
VneI GTGCAC 1 cut(s) 2089
XapI RAATTY 2 cut(s) 701, 1637
XcmI CCANNNNNNNNNTGG 3 cut(s) 458, 1394, 2482
XmnI GAANNNNTTC 4 cut(s) 915, 1803, 1962, 2136
XspI CTAG 4 cut(s) 500, 1436, 2321, 2400
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.