Rmu_sc0034991.1_g000001

RNA binding

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0034991.1
OG0016319
Physical Location & Seq
Forward (+)
1 .. 1094
1094 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0034991.1_g000001.1.cds

Sequence Viewer

Length: 439 bp
agttcacaccagtgaatcccaggggttgtatggtgttattacatttgcaaaggagcatgaaagggatctagcatcaattcatatggccagtcaatgttttaggaggacagaagatggcaaaccgcatcatttcttctataaagatacagctgctgagtgccagagggctgcctacccaagtacccatccagaggatgcacatccaaatggttcaaaaatttacattcaaaacttggaaatggatgtcactaaagggttcttgctacggaaattttctccctatggtgaggtttctaaaatcaccataaggggatgtgctctgattcagtttgttgatagatcgagtgctgataaagcattgcttcacatgaatgatgacctcattctgcagaatagcttacttccactgaccatgagaaaatgtgagtttctatcatag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
RRM_1

Protein Analysis

145

Amino Acids

16.47

Weight (kDa)

6.76

Isoelectric Point (pI)

32.67

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 123
AclWI GGATC 1 cut(s) 73
AcoI YGGCCR 1 cut(s) 85
AcsI RAATTY 2 cut(s) 217, 270
AfaI GTAC 1 cut(s) 182
AfiI CCNNNNNNNGG 1 cut(s) 191
AgsI TTSAA 2 cut(s) 214, 228
AjnI CCWGG 1 cut(s) 19
AleI CACNNNNGTG 1 cut(s) 10
AluBI AGCT 2 cut(s) 150, 397
AluI AGCT 2 cut(s) 150, 397
Alw21I GWGCWC 1 cut(s) 320
AlwI GGATC 1 cut(s) 73
AlwNI CAGNNNCTG 1 cut(s) 153
AoxI GGCC 1 cut(s) 85
ApeKI GCWGC 2 cut(s) 150, 168
ApoI RAATTY 2 cut(s) 217, 270
AsuHPI GGTGA 2 cut(s) 293, 297
BaeI ACNNNNGTAYC 2 cut(s) 164, 197
BalI TGGCCA 1 cut(s) 87
Bbv12I GWGCWC 1 cut(s) 320
BbvI GCAGC 2 cut(s) 137, 155
BccI CCATC 2 cut(s) 108, 193
BciT130I CCWGG 1 cut(s) 21
BfaI CTAG 1 cut(s) 69
BfmI CTRYAG 1 cut(s) 387
BisI GCNGC 2 cut(s) 151, 169
BlsI GCNGC 2 cut(s) 152, 170
Bme1390I CCNGG 1 cut(s) 21
BmrFI CCNGG 1 cut(s) 21
BmsI GCATC 3 cut(s) 81, 134, 185
BsaBI GATNNNNATC 1 cut(s) 199
BsaJI CCNNGG 2 cut(s) 19, 20
Bsc4I CCNNNNNNNGG 1 cut(s) 191
Bse1I ACTGG 2 cut(s) 10, 88
Bse3DI GCAATG 1 cut(s) 357
Bse8I GATNNNNATC 1 cut(s) 199
BseBI CCWGG 1 cut(s) 21
BseDI CCNNGG 2 cut(s) 19, 20
BseGI GGATG 5 cut(s) 185, 200, 200, 248, 318
BseJI GATNNNNATC 1 cut(s) 199
BseLI CCNNNNNNNGG 1 cut(s) 191
BseMI GCAATG 1 cut(s) 357
BseMII CTCAG 1 cut(s) 145
BseNI ACTGG 2 cut(s) 10, 88
BseXI GCAGC 2 cut(s) 137, 155
BshFI GGCC 1 cut(s) 87
BsiHKAI GWGCWC 1 cut(s) 320
BslI CCNNNNNNNGG 1 cut(s) 191
BsnI GGCC 1 cut(s) 87
Bsp1286I GDGCHC 1 cut(s) 320
Bsp143I GATC 2 cut(s) 65, 339
BspACI CCGC 1 cut(s) 123
BspANI GGCC 1 cut(s) 87
BspCNI CTCAG 1 cut(s) 146
BspMAI CTGCAG 1 cut(s) 391
BspPI GGATC 1 cut(s) 73
BsrDI GCAATG 1 cut(s) 357
BsrI ACTGG 2 cut(s) 10, 88
BssECI CCNNGG 2 cut(s) 19, 20
BssMI GATC 2 cut(s) 65, 339
Bst2UI CCWGG 1 cut(s) 21
BstDEI CTNAG 1 cut(s) 154
BstF5I GGATG 5 cut(s) 185, 200, 200, 248, 318
BstKTI GATC 2 cut(s) 68, 342
BstMBI GATC 2 cut(s) 65, 339
BstMWI GCNNNNNNNGC 1 cut(s) 354
BstNI CCWGG 1 cut(s) 21
BstSCI CCNGG 1 cut(s) 19
BstSFI CTRYAG 1 cut(s) 387
BstV1I GCAGC 2 cut(s) 137, 155
BstX2I RGATCY 1 cut(s) 65
BstYI RGATCY 1 cut(s) 65
BsuRI GGCC 1 cut(s) 87
BtsCI GGATG 5 cut(s) 185, 200, 200, 248, 318
BtsIMutI CAGTG 2 cut(s) 17, 405
CaiI CAGNNNCTG 1 cut(s) 153
Csp6I GTAC 1 cut(s) 181
CviAII CATG 3 cut(s) 57, 368, 413
CviJI RGCY 4 cut(s) 87, 150, 168, 397
CviKI_1 RGCY 4 cut(s) 87, 150, 168, 397
CviQI GTAC 1 cut(s) 181
DdeI CTNAG 1 cut(s) 154
DpnI GATC 2 cut(s) 67, 341
DpnII GATC 2 cut(s) 65, 339
EaeI YGGCCR 1 cut(s) 85
EcoRII CCWGG 1 cut(s) 19
FaeI CATG 3 cut(s) 60, 371, 416
FalI AAGNNNNNCTT 2 cut(s) 346, 378
FatI CATG 3 cut(s) 56, 367, 412
FauNDI CATATG 1 cut(s) 82
Fnu4HI GCNGC 2 cut(s) 151, 169
FokI GGATG 5 cut(s) 172, 187, 207, 255, 325
Fsp4HI GCNGC 2 cut(s) 151, 169
FspBI CTAG 1 cut(s) 69
GluI GCNGC 2 cut(s) 151, 169
HaeIII GGCC 1 cut(s) 87
Hin1II CATG 3 cut(s) 60, 371, 416
HinfI GANTC 2 cut(s) 15, 323
HphI GGTGA 2 cut(s) 293, 297
Hpy166II GTNNAC 1 cut(s) 5
Hpy188I TCNGA 1 cut(s) 322
Hpy188III TCNNGA 1 cut(s) 189
Hpy8I GTNNAC 1 cut(s) 5
HpyCH4V TGCA 3 cut(s) 48, 198, 389
HpyF10VI GCNNNNNNNGC 1 cut(s) 354
HpyF3I CTNAG 1 cut(s) 154
Hsp92II CATG 3 cut(s) 60, 371, 416
Kzo9I GATC 2 cut(s) 65, 339
LmnI GCTCC 1 cut(s) 53
LpnPI CCDG 6 cut(s) 6, 23, 33, 101, 174, 202
Lsp1109I GCAGC 2 cut(s) 137, 155
LweI GCATC 3 cut(s) 81, 134, 185
MaeI CTAG 1 cut(s) 69
MaeIII GTNAC 1 cut(s) 245
MalI GATC 2 cut(s) 67, 341
MboI GATC 2 cut(s) 65, 339
MboII GAAGA 2 cut(s) 123, 125
MflI RGATCY 1 cut(s) 65
MhlI GDGCHC 1 cut(s) 320
MlsI TGGCCA 1 cut(s) 87
MluCI AATT 3 cut(s) 76, 217, 270
MluNI TGGCCA 1 cut(s) 87
MnlI CCTC 5 cut(s) 97, 157, 185, 281, 390
Mox20I TGGCCA 1 cut(s) 87
MscI TGGCCA 1 cut(s) 87
MslI CAYNNNNRTG 3 cut(s) 10, 205, 370
Msp20I TGGCCA 1 cut(s) 87
MspA1I CMGCKG 1 cut(s) 150
MspR9I CCNGG 1 cut(s) 21
MvaI CCWGG 1 cut(s) 21
MwoI GCNNNNNNNGC 1 cut(s) 354
NdeI CATATG 1 cut(s) 82
NdeII GATC 2 cut(s) 65, 339
NlaIII CATG 3 cut(s) 60, 371, 416
NmuCI GTSAC 1 cut(s) 245
OliI CACNNNNGTG 1 cut(s) 10
PasI CCCWGGG 1 cut(s) 20
PfeI GAWTC 2 cut(s) 15, 323
PkrI GCNGC 2 cut(s) 152, 170
Psp6I CCWGG 1 cut(s) 19
PspGI CCWGG 1 cut(s) 19
PstI CTGCAG 1 cut(s) 391
PstNI CAGNNNCTG 1 cut(s) 153
PsuI RGATCY 1 cut(s) 65
PvuII CAGCTG 1 cut(s) 150
RsaI GTAC 1 cut(s) 182
RsaNI GTAC 1 cut(s) 181
RseI CAYNNNNRTG 3 cut(s) 10, 205, 370
SatI GCNGC 2 cut(s) 151, 169
Sau3AI GATC 2 cut(s) 65, 339
ScrFI CCNGG 1 cut(s) 21
SduI GDGCHC 1 cut(s) 320
SetI ASST 4 cut(s) 152, 292, 382, 399
SfaNI GCATC 3 cut(s) 81, 134, 185
SfcI CTRYAG 1 cut(s) 387
SmiMI CAYNNNNRTG 3 cut(s) 10, 205, 370
Sse9I AATT 3 cut(s) 76, 217, 270
SsiI CCGC 1 cut(s) 123
SspMI CTAG 1 cut(s) 69
StyD4I CCNGG 1 cut(s) 19
TaqI TCGA 1 cut(s) 342
TasI AATT 3 cut(s) 76, 217, 270
TfiI GAWTC 2 cut(s) 15, 323
TscAI CASTG 2 cut(s) 17, 412
TseFI GTSAC 1 cut(s) 245
TseI GCWGC 2 cut(s) 150, 168
Tsp45I GTSAC 1 cut(s) 245
TspDTI ATGAA 3 cut(s) 69, 73, 384
TspGWI ACGGA 1 cut(s) 281
TspRI CASTG 2 cut(s) 17, 412
XapI RAATTY 2 cut(s) 217, 270
XcmI CCANNNNNNNNNTGG 1 cut(s) 27
XspI CTAG 1 cut(s) 69
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.