Rmu_co8507573.1_g000001

RNA binding

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_co8507573.1
OG0016319
Physical Location & Seq
Reverse (-)
2 .. 3260
3259 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_co8507573.1_g000001.1.cds

Sequence Viewer

Length: 822 bp
atgacgctgttcgacactttttcttatttgactactgcctacccaagtacccatccagacgatacacatccaaatggttcaacagatgttaccgaaggtttcttgctacggaaattttccccctatggtgaggtttctaaagtcaccataaggggatgtgctctgattcagtttgttgatagatcgagtgccgataaagcattgcttcacatgaatgatgacttcattctgcagaatagcttacttacactgaccatgagaaaatcaaatgatgaatctgatccagtagcttcatctgttgaagacttcaaggaactaacagagcttaaggaattaacccatgaagatcaaagatcagtatttgggttcaaagtgtgtgaagtcgattcgtcctcgttggaaatggcagaccgccgttccctgtctctccacatcgctgatttgcaggcctggatggacaagccctacttgcgggacgagtgcttcccagagtttccgggagaggttatgagtgctagcatttttgttgagaaaagtggttatcgctatggttttctggagtttaggtctcctgaggtagcagagcttgtacgcaagacgtacaatggcaagacgatgcccaaggcgtgtcaatatttccgtctcaataggaacaggtccaagagaccaccgggaactatggctgcacctgaagaagggaattacaagcttgtagttgatgggaatttgccgaaggatgttactgctgaagaactgcagcagcactttagaacctattacccttcagttaaggatgctgaagttcacaccagtgaatcccag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
RRM_1

Protein Analysis

274

Amino Acids

31.22

Weight (kDa)

5.18

Isoelectric Point (pI)

46.68

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 2 cut(s) 412, 472
AclWI GGATC 1 cut(s) 275
AcsI RAATTY 2 cut(s) 113, 724
AcuI CTGAAG 4 cut(s) 711, 768, 768, 819
AfaI GTAC 3 cut(s) 49, 591, 602
AfiI CCNNNNNNNGG 2 cut(s) 471, 695
AflII CTTAAG 1 cut(s) 326
AgsI TTSAA 4 cut(s) 81, 302, 310, 370
AjnI CCWGG 1 cut(s) 449
AleI CACNNNNGTG 1 cut(s) 810
AluBI AGCT 5 cut(s) 240, 290, 325, 586, 709
AluI AGCT 5 cut(s) 240, 290, 325, 586, 709
Alw21I GWGCWC 1 cut(s) 163
Alw26I GTCTC 4 cut(s) 429, 573, 647, 658
AlwI GGATC 1 cut(s) 275
AoxI GGCC 1 cut(s) 447
ApeKI GCWGC 3 cut(s) 683, 757, 760
ApoI RAATTY 2 cut(s) 113, 724
AspS9I GGNCC 1 cut(s) 657
AsuC2I CCSGG 2 cut(s) 498, 672
AsuHPI GGTGA 2 cut(s) 136, 140
AsuNHI GCTAGC 1 cut(s) 515
AvaII GGWCC 1 cut(s) 657
AxyI CCTNAGG 1 cut(s) 573
BaeI ACNNNNGTAYC 2 cut(s) 31, 64
BbsI GAAGAC 1 cut(s) 309
Bbv12I GWGCWC 1 cut(s) 163
BbvI GCAGC 3 cut(s) 670, 769, 772
BccI CCATC 3 cut(s) 60, 448, 713
BceAI ACGGC 1 cut(s) 399
BciT130I CCWGG 1 cut(s) 451
BcnI CCSGG 2 cut(s) 498, 672
BcoDI GTCTC 4 cut(s) 429, 573, 647, 658
BfaI CTAG 1 cut(s) 516
BfmI CTRYAG 2 cut(s) 230, 755
BfrI CTTAAG 1 cut(s) 326
BisI GCNGC 3 cut(s) 684, 758, 761
BlsI GCNGC 3 cut(s) 685, 759, 762
Bme1390I CCNGG 3 cut(s) 451, 498, 672
Bme18I GGWCC 1 cut(s) 657
BmgT120I GGNCC 1 cut(s) 657
BmrFI CCNGG 3 cut(s) 451, 498, 672
BmsI GCATC 2 cut(s) 606, 784
BmtI GCTAGC 1 cut(s) 519
BpiI GAAGAC 1 cut(s) 309
BpmI CTGGAG 1 cut(s) 578
BpuMI CCSGG 2 cut(s) 498, 672
BsaBI GATNNNNATC 1 cut(s) 66
BsaI GGTCTC 2 cut(s) 573, 658
BsaJI CCNNGG 1 cut(s) 621
BsaXI ACNNNNNCTCC 2 cut(s) 551, 581
Bsc4I CCNNNNNNNGG 2 cut(s) 471, 695
Bse1I ACTGG 2 cut(s) 284, 810
Bse21I CCTNAGG 1 cut(s) 573
Bse3DI GCAATG 1 cut(s) 200
Bse8I GATNNNNATC 1 cut(s) 66
BseBI CCWGG 1 cut(s) 451
BseDI CCNNGG 1 cut(s) 621
BseGI GGATG 6 cut(s) 52, 67, 161, 459, 742, 799
BseJI GATNNNNATC 1 cut(s) 66
BseLI CCNNNNNNNGG 2 cut(s) 471, 695
BseMI GCAATG 1 cut(s) 200
BseMII CTCAG 1 cut(s) 564
BseNI ACTGG 2 cut(s) 284, 810
BseXI GCAGC 3 cut(s) 670, 769, 772
BsgI GTGCAG 1 cut(s) 669
BshFI GGCC 1 cut(s) 449
BsiHKAI GWGCWC 1 cut(s) 163
BsiSI CCGG 2 cut(s) 497, 671
BslFI GGGAC 1 cut(s) 488
BslI CCNNNNNNNGG 2 cut(s) 471, 695
BsmAI GTCTC 4 cut(s) 429, 573, 647, 658
BsmBI CGTCTC 1 cut(s) 647
BsmFI GGGAC 1 cut(s) 488
BsnI GGCC 1 cut(s) 449
Bso31I GGTCTC 2 cut(s) 573, 658
Bsp1286I GDGCHC 1 cut(s) 163
Bsp143I GATC 4 cut(s) 182, 280, 346, 353
BspACI CCGC 2 cut(s) 412, 472
BspANI GGCC 1 cut(s) 449
BspCNI CTCAG 1 cut(s) 565
BspMAI CTGCAG 2 cut(s) 234, 759
BspOI GCTAGC 1 cut(s) 519
BspPI GGATC 1 cut(s) 275
BspTI CTTAAG 1 cut(s) 326
BspTNI GGTCTC 2 cut(s) 573, 658
BsrDI GCAATG 1 cut(s) 200
BsrI ACTGG 2 cut(s) 284, 810
BssECI CCNNGG 1 cut(s) 621
BssMI GATC 4 cut(s) 182, 280, 346, 353
BssT1I CCWWGG 1 cut(s) 621
Bst2UI CCWGG 1 cut(s) 451
BstAFI CTTAAG 1 cut(s) 326
BstC8I GCNNGC 2 cut(s) 447, 517
BstDEI CTNAG 1 cut(s) 573
BstENI CCTNNNNNAGG 1 cut(s) 693
BstF5I GGATG 6 cut(s) 52, 67, 161, 459, 742, 799
BstKTI GATC 4 cut(s) 185, 283, 349, 356
BstMAI GTCTC 4 cut(s) 429, 573, 647, 658
BstMBI GATC 4 cut(s) 182, 280, 346, 353
BstMWI GCNNNNNNNGC 2 cut(s) 197, 469
BstNI CCWGG 1 cut(s) 451
BstSCI CCNGG 3 cut(s) 449, 496, 670
BstSFI CTRYAG 2 cut(s) 230, 755
BstV1I GCAGC 3 cut(s) 670, 769, 772
BstV2I GAAGAC 1 cut(s) 309
Bsu36I CCTNAGG 1 cut(s) 573
BsuRI GGCC 1 cut(s) 449
BtgZI GCGATG 1 cut(s) 418
BtsCI GGATG 6 cut(s) 52, 67, 161, 459, 742, 799
BtsIMutI CAGTG 2 cut(s) 248, 817
Cac8I GCNNGC 2 cut(s) 447, 517
Cfr13I GGNCC 1 cut(s) 657
CseI GACGC 1 cut(s) 13
Csp6I GTAC 3 cut(s) 48, 590, 601
CviAII CATG 3 cut(s) 211, 256, 341
CviJI RGCY 8 cut(s) 240, 290, 325, 449, 463, 586, 683, 709
CviKI_1 RGCY 8 cut(s) 240, 290, 325, 449, 463, 586, 683, 709
CviQI GTAC 3 cut(s) 48, 590, 601
DdeI CTNAG 1 cut(s) 573
DpnI GATC 4 cut(s) 184, 282, 348, 355
DpnII GATC 4 cut(s) 182, 280, 346, 353
Eco130I CCWWGG 1 cut(s) 621
Eco147I AGGCCT 1 cut(s) 449
Eco31I GGTCTC 2 cut(s) 573, 658
Eco47I GGWCC 1 cut(s) 657
Eco57I CTGAAG 4 cut(s) 711, 768, 768, 819
Eco81I CCTNAGG 1 cut(s) 573
EcoNI CCTNNNNNAGG 1 cut(s) 693
EcoRII CCWGG 1 cut(s) 449
EcoT14I CCWWGG 1 cut(s) 621
ErhI CCWWGG 1 cut(s) 621
Esp3I CGTCTC 1 cut(s) 647
FaeI CATG 3 cut(s) 214, 259, 344
FaiI YATR 8 cut(s) 126, 149, 212, 257, 342, 509, 549, 680
FalI AAGNNNNNCTT 4 cut(s) 189, 221, 452, 484
FaqI GGGAC 1 cut(s) 488
FatI CATG 3 cut(s) 210, 255, 340
FauI CCCGC 1 cut(s) 465
Fnu4HI GCNGC 3 cut(s) 684, 758, 761
FokI GGATG 6 cut(s) 39, 54, 168, 466, 749, 806
Fsp4HI GCNGC 3 cut(s) 684, 758, 761
FspBI CTAG 1 cut(s) 516
GluI GCNGC 3 cut(s) 684, 758, 761
GsuI CTGGAG 1 cut(s) 578
HaeIII GGCC 1 cut(s) 449
HapII CCGG 2 cut(s) 497, 671
HgaI GACGC 1 cut(s) 13
Hin1II CATG 3 cut(s) 214, 259, 344
HindIII AAGCTT 1 cut(s) 707
HinfI GANTC 4 cut(s) 166, 275, 386, 815
HpaII CCGG 2 cut(s) 497, 671
HphI GGTGA 2 cut(s) 136, 140
Hpy166II GTNNAC 1 cut(s) 805
Hpy188I TCNGA 2 cut(s) 165, 280
Hpy188III TCNNGA 3 cut(s) 56, 557, 572
Hpy8I GTNNAC 1 cut(s) 805
HpyAV CCTTC 4 cut(s) 89, 689, 727, 792
HpyCH4IV ACGT 1 cut(s) 599
HpyCH4V TGCA 4 cut(s) 232, 445, 686, 757
HpyF10VI GCNNNNNNNGC 2 cut(s) 197, 469
HpyF3I CTNAG 1 cut(s) 573
HpySE526I ACGT 1 cut(s) 599
Hsp92II CATG 3 cut(s) 214, 259, 344
Kzo9I GATC 4 cut(s) 182, 280, 346, 353
Lsp1109I GCAGC 3 cut(s) 670, 769, 772
LweI GCATC 2 cut(s) 606, 784
MaeI CTAG 1 cut(s) 516
MaeII ACGT 1 cut(s) 599
MaeIII GTNAC 3 cut(s) 88, 142, 739
MalI GATC 4 cut(s) 184, 282, 348, 355
MboI GATC 4 cut(s) 182, 280, 346, 353
MboII GAAGA 4 cut(s) 314, 356, 704, 761
MhlI GDGCHC 1 cut(s) 163
MluCI AATT 4 cut(s) 113, 332, 700, 724
MmeI TCCRAC 1 cut(s) 378
MnlI CCTC 4 cut(s) 124, 403, 496, 568
MseI TTAA 3 cut(s) 327, 335, 789
MslI CAYNNNNRTG 3 cut(s) 72, 213, 810
MspCI CTTAAG 1 cut(s) 326
MspI CCGG 2 cut(s) 497, 671
MspR9I CCNGG 3 cut(s) 451, 498, 672
MvaI CCWGG 1 cut(s) 451
MwoI GCNNNNNNNGC 2 cut(s) 197, 469
NciI CCSGG 2 cut(s) 498, 672
NdeII GATC 4 cut(s) 182, 280, 346, 353
NheI GCTAGC 1 cut(s) 515
NlaIII CATG 3 cut(s) 214, 259, 344
NmuCI GTSAC 1 cut(s) 142
OliI CACNNNNGTG 1 cut(s) 810
PceI AGGCCT 1 cut(s) 449
PfeI GAWTC 4 cut(s) 166, 275, 386, 815
PfoI TCCNGGA 1 cut(s) 496
PkrI GCNGC 3 cut(s) 685, 759, 762
Psp6I CCWGG 1 cut(s) 449
PspGI CCWGG 1 cut(s) 449
PspPI GGNCC 1 cut(s) 657
PstI CTGCAG 2 cut(s) 234, 759
RsaI GTAC 3 cut(s) 49, 591, 602
RsaNI GTAC 3 cut(s) 48, 590, 601
RseI CAYNNNNRTG 3 cut(s) 72, 213, 810
SaqAI TTAA 3 cut(s) 327, 335, 789
SatI GCNGC 3 cut(s) 684, 758, 761
Sau3AI GATC 4 cut(s) 182, 280, 346, 353
Sau96I GGNCC 1 cut(s) 657
ScrFI CCNGG 3 cut(s) 451, 498, 672
SduI GDGCHC 1 cut(s) 163
SfaNI GCATC 2 cut(s) 606, 784
SfcI CTRYAG 2 cut(s) 230, 755
SinI GGWCC 1 cut(s) 657
SmiMI CAYNNNNRTG 3 cut(s) 72, 213, 810
SmlI CTYRAG 1 cut(s) 326
SmoI CTYRAG 1 cut(s) 326
Sse9I AATT 4 cut(s) 113, 332, 700, 724
SseBI AGGCCT 1 cut(s) 449
SsiI CCGC 2 cut(s) 412, 472
SspI AATATT 1 cut(s) 635
SspMI CTAG 1 cut(s) 516
StuI AGGCCT 1 cut(s) 449
StyD4I CCNGG 3 cut(s) 449, 496, 670
StyI CCWWGG 1 cut(s) 621
TaiI ACGT 1 cut(s) 602
TaqI TCGA 3 cut(s) 12, 185, 384
TasI AATT 4 cut(s) 113, 332, 700, 724
TfiI GAWTC 4 cut(s) 166, 275, 386, 815
Tru1I TTAA 3 cut(s) 327, 335, 789
Tru9I TTAA 3 cut(s) 327, 335, 789
TscAI CASTG 2 cut(s) 255, 817
TseFI GTSAC 1 cut(s) 142
TseI GCWGC 3 cut(s) 683, 757, 760
Tsp45I GTSAC 1 cut(s) 142
TspDTI ATGAA 5 cut(s) 214, 227, 282, 288, 357
TspGWI ACGGA 2 cut(s) 124, 629
TspRI CASTG 2 cut(s) 255, 817
Vha464I CTTAAG 1 cut(s) 326
VpaK11BI GGWCC 1 cut(s) 657
XagI CCTNNNNNAGG 1 cut(s) 693
XapI RAATTY 2 cut(s) 113, 724
XspI CTAG 1 cut(s) 516
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.