FvH4_4g33690

Belongs to the class-I aminoacyl-tRNA synthetase family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb4
OG0018032
Physical Location & Seq
Reverse (-)
31826347 .. 31830314
3968 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_4g33690.t1

Sequence Viewer

Length: 1884 bp
ATGGCAGCCAAAGGTGAGACGAGCTCATCCAAAGTGCGCAATAGAGAGTTTCTCTTGGAGATTGAGGCAAAAGTTCGAAAATGGTGGGAAGACGAGAAAGTTTTCAGTGCTGAATGTGAAAAGCCTGGTCACAAGTTCTTTGGAAAACTCCCTTTTGATAGTTTTATGGAAAATCCGTTCAGTCTGTCAAAGCTGGAATGGCTGCCAGATATTCCTATTGATGTCATCAGATTTGCTTTGGTATATGTTTGTGATGGTGCTGTTGATGAGGCAAAAATCAACTTTCTACATAGCAATGCAGCTTCTGTATACAATGCTGCAAACACTGCCATCCTAAAATTCAATGAAGAGATGTCATGGCATGAAGAATTCTTGGCTGCAGATTTTGAATCTTTGAGATGTGGTCCCCCTTCTACTTTCGCAGACAGGGTGTTTGCCAATGAGATAAACATTGCTTTGAACAGGACCAAAGAGCAATACGAAGCTGGCCAGTTTCGAGGAGCCCTGGATTCCATTTTTGAGCTTCAAGATGCCAGAGATTGGTACAAGATTTCATGTGGTGGTACAAACGCAATGAACCGTGACTTGGTGTGGCGTTTTATGGATGTGCAGACATGTCTTATAACTCCAATCTGTCCACACTATAGGGAGTATGTCTGGAGGGATCTTCTGAACAAGATGGACTTTGTGGTGAATGCAGACTGGCCTGTCGCTGATGCTCCAGATGAGTCAATCCTTCAGAGTGGCGATAAGTATTTGAAAGACTTAATTGATTCAATGAAGAGACACGTTGAAAGTGAGAGAAATAAGAAGGGTACTGCTCTAGCTACCACTAGTTTGACAGACGAAAGCCAAAAATTAGAAGCTCTTATATATGTTAATGAGGCAGGTGATACACTTACTTTCTCTACCGAGGCATTGCATACAGATTTTAAACAACACGGAAATGAGTTCAATCAGAATGCGAAAGTAAAGTTCGGGGATCAATTCTTAGATTTGAAGCTGCCTTTTAGAGAGAAAGTGCTTCTACAGAATTTGAACTTTATTAAGAGGGAAATTGGTCTTGACAAGGTGCAAGTTTTATCAGCTACCAACCCTGGTGATCTTGCTAAAGCTGGTTCTCCTATTAAATTGTCAGATGCTGAATCTTCCTCACCTGGAAAGCCAGCTATTCTCTCCTTGACATGTCCAAAAAGAGATTTTAGATCATTTGGTACTTCAAAGACTACACCGTTAATGGCCGATTTATCCTCATCTGGCTCTGCACCAAAGCACACCAACCCTTTAACCATGCTCAGTTTGTGGCCAAAATTTAAGCTACCCCAAATATTCTCACAAAGGGAAGAAAATTACCCCGAAGAACTCTCACAAAGGGAAAAATACTATCCTGAAAAATGTCACAATAATCCTGCTTCCTTGTATCGCCCTCCCTCTAAGCTACTCTTCCAGGGTTCCTTTGACAAGGCCTTAGATACTGCTTGTAACCAAGACAAATGGCTCCTGGTGAACATGCAATGTTTGGATAATTTCAGCTCGCATATGCTTAATCACCACGTCTGGTCTGAAAAAGCTGTCTGTGAGACCATTAGTACCAATCTTATCTTTTGGCACGAGTATTTTGATACACCTGAAGGTGATATGGTTTCCAGAAAGTACATCTTGGACTCAAGAACCATAGTGCTGCTGATTGACCCCATGACTAGTGAAGCAATGTGTTCATGGAAAGGAATGGTTAATCCGAATGATTTTATGGAGGATCTAGTACCATACTTGCTGACTAGCCCCAAGAATAACTGTGTACCTCAAGAAGAGAAGGAACTACTGCGGCACACATCGAAGTTGGAGACAAGTAGTGGAAGTACTTCCAAAGCCAAACAAGACTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000323 GO:0001101 GO:0003674 GO:0003824 GO:0004812 GO:0004819 GO:0004823 GO:0004832 GO:0005096 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005737 GO:0005764 GO:0005773 GO:0005783 GO:0005829 GO:0005911 GO:0006082 GO:0006139 GO:0006399 GO:0006412 GO:0006418 GO:0006425 GO:0006429 GO:0006438 GO:0006518 GO:0006520 GO:0006605 GO:0006622 GO:0006623 GO:0006725 GO:0006807 GO:0006810 GO:0006886 GO:0006950 GO:0007034 GO:0007041 GO:0007154 GO:0008047 GO:0008104 GO:0008150 GO:0008152 GO:0008361 GO:0009058 GO:0009059 GO:0009267 GO:0009506 GO:0009507 GO:0009536 GO:0009605 GO:0009719 GO:0009892 GO:0009894 GO:0009895 GO:0009966 GO:0009967 GO:0009987 GO:0009991 GO:0010033 GO:0010243 GO:0010467 GO:0010506 GO:0010507 GO:0010646 GO:0010647 GO:0012505 GO:0015031 GO:0015833 GO:0016043 GO:0016070 GO:0016604 GO:0016874 GO:0016875 GO:0017101 GO:0019222 GO:0019538 GO:0019752 GO:0023051 GO:0023056 GO:0030054 GO:0030234 GO:0030695 GO:0031323 GO:0031324 GO:0031329 GO:0031330 GO:0031667 GO:0031668 GO:0031669 GO:0031974 GO:0031981 GO:0032006 GO:0032008 GO:0032535 GO:0032991 GO:0033036 GO:0033365 GO:0033554 GO:0034198 GO:0034613 GO:0034641 GO:0034645 GO:0034660 GO:0042221 GO:0042594 GO:0042886 GO:0043038 GO:0043039 GO:0043043 GO:0043085 GO:0043087 GO:0043170 GO:0043200 GO:0043201 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043436 GO:0043547 GO:0043603 GO:0043604 GO:0044093 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044281 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044446 GO:0044451 GO:0044464 GO:0045184 GO:0046483 GO:0046907 GO:0048518 GO:0048519 GO:0048522 GO:0048523 GO:0048583 GO:0048584 GO:0050789 GO:0050790 GO:0050794 GO:0050896 GO:0051179 GO:0051234 GO:0051336 GO:0051345 GO:0051641 GO:0051649 GO:0051716 GO:0055044 GO:0060589 GO:0061462 GO:0065007 GO:0065008 GO:0065009 GO:0070013 GO:0070727 GO:0070887 GO:0071229 GO:0071230 GO:0071233 GO:0071310 GO:0071417 GO:0071495 GO:0071496 GO:0071702 GO:0071704 GO:0071705 GO:0071840 GO:0072594 GO:0072665 GO:0072666 GO:0090066 GO:0090304 GO:0098772 GO:0140098 GO:0140101 GO:1901360 GO:1901564 GO:1901566 GO:1901576 GO:1901698 GO:1901699 GO:1901700 GO:1901701 GO:1902531 GO:1902533 GO:1903432 GO:1904263 GO:1990253 GO:1990928
KEGG Pathways
Metabolic & Signaling
ko00970 map00970
Pfam Domains
Protein Families
Anticodon_1 tRNA-synt_1

Protein Analysis

628

Amino Acids

71.43

Weight (kDa)

5.44

Isoelectric Point (pI)

39.98

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Anticodon_1 PF08264 142 - 273 1.7e-11 Anticodon-binding domain of tRNA ligase
Thioredoxin_7 PF13899 485 - 547 3.4e-06 Thioredoxin-like
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0018032)

Species Orthologous Gene IDs
fragaria_vesca FvH4_4g33690 FvH4_4g33700
rosa_chinensis RchiOBHm_Chr4g0443171
rosa_laevigata RLG00000005950
rosa_multiflora Rmu_sc0007968.1_g000006
rosa_roxburghii Rroxscaffold_5G00383770
rosa_rugosa Rorug04G0344700
rosa_samantha Rh4BG410800 Rh4CG426300 Rh4DG405900
rosa_wichuraiana Rw4G034420

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 623
AarI CACCTGC 1 cut(s) 878
AasI GACNNNNNNGTC 1 cut(s) 707
Acc16I TGCGCA 1 cut(s) 38
Acc36I ACCTGC 1 cut(s) 878
AccB7I CCANNNNNTGG 1 cut(s) 540
AccI GTMKAC 1 cut(s) 309
AciI CCGC 1 cut(s) 1825
AclWI GGATC 3 cut(s) 672, 990, 1764
AcoI YGGCCR 3 cut(s) 487, 1239, 1304
AcsI RAATTY 4 cut(s) 338, 368, 1033, 1310
AcuI CTGAAG 2 cut(s) 722, 1650
AfaI GTAC 9 cut(s) 545, 565, 817, 1216, 1591, 1655, 1764, 1800, 1861
AfiI CCNNNNNNNGG 2 cut(s) 540, 586
AflIII ACRYGT 3 cut(s) 614, 787, 1184
AhlI ACTAGT 2 cut(s) 833, 1700
AjiI CACGTC 1 cut(s) 1555
AjnI CCWGG 6 cut(s) 124, 504, 1096, 1156, 1446, 1500
AjuI GAANNNNNNNTTGG 2 cut(s) 569, 601
AloI GAACNNNNNNTCC 2 cut(s) 161, 193
Alw21I GWGCWC 1 cut(s) 26
Alw26I GTCTC 4 cut(s) 11, 778, 1574, 1838
AlwI GGATC 3 cut(s) 672, 990, 1764
AlwNI CAGNNNCTG 2 cut(s) 305, 1142
AoxI GGCC 5 cut(s) 487, 704, 1239, 1304, 1464
ApeKI GCWGC 7 cut(s) 5, 202, 299, 317, 377, 1003, 1681
ApoI RAATTY 4 cut(s) 338, 368, 1033, 1310
ArsI GACNNNNNNTTYG 2 cut(s) 416, 448
Asp700I GAANNNNTTC 2 cut(s) 101, 1861
AspLEI GCGC 1 cut(s) 39
AspS9I GGNCC 2 cut(s) 404, 465
AsuHPI GGTGA 8 cut(s) 26, 703, 902, 1112, 1146, 1516, 1541, 1646
AsuII TTCGAA 1 cut(s) 76
AvaII GGWCC 2 cut(s) 404, 465
BalI TGGCCA 2 cut(s) 489, 1306
BanII GRGCYC 2 cut(s) 26, 505
BauI CACGAG 1 cut(s) 1610
BbsI GAAGAC 1 cut(s) 96
Bbv12I GWGCWC 1 cut(s) 26
BbvI GCAGC 7 cut(s) 17, 189, 304, 311, 364, 990, 1668
BccI CCATC 3 cut(s) 248, 338, 673
BciT130I CCWGG 6 cut(s) 126, 506, 1098, 1158, 1448, 1502
BcoDI GTCTC 4 cut(s) 11, 778, 1574, 1838
BcuI ACTAGT 2 cut(s) 833, 1700
BfaI CTAG 6 cut(s) 824, 834, 1701, 1760, 1779, 1882
BfmI CTRYAG 3 cut(s) 378, 643, 1028
BfuAI ACCTGC 1 cut(s) 878
BisI GCNGC 8 cut(s) 6, 203, 300, 318, 378, 1004, 1682, 1826
BlsI GCNGC 8 cut(s) 7, 204, 301, 319, 379, 1005, 1683, 1827
BmcAI AGTACT 1 cut(s) 1861
Bme1390I CCNGG 6 cut(s) 126, 506, 1098, 1158, 1448, 1502
Bme18I GGWCC 2 cut(s) 404, 465
BmgBI CACGTC 1 cut(s) 1555
BmgT120I GGNCC 2 cut(s) 404, 465
BmiI GGNNCC 4 cut(s) 406, 502, 1453, 1499
BmrFI CCNGG 6 cut(s) 126, 506, 1098, 1158, 1448, 1502
BmsI GCATC 3 cut(s) 520, 706, 1129
BpiI GAAGAC 1 cut(s) 96
BplI GAGNNNNNCTC 4 cut(s) 8, 40, 36, 68
BpmI CTGGAG 2 cut(s) 679, 705
Bpu14I TTCGAA 1 cut(s) 76
BpuEI CTTGAG 2 cut(s) 1651, 1788
BsaI GGTCTC 1 cut(s) 1574
BsaJI CCNNGG 4 cut(s) 504, 912, 1096, 1447
Bsc4I CCNNNNNNNGG 2 cut(s) 540, 586
Bse1I ACTGG 2 cut(s) 490, 707
Bse3DI GCAATG 6 cut(s) 301, 450, 579, 917, 1520, 1716
BseBI CCWGG 6 cut(s) 126, 506, 1098, 1158, 1448, 1502
BseDI CCNNGG 4 cut(s) 504, 912, 1096, 1447
BseGI GGATG 3 cut(s) 26, 330, 610
BseLI CCNNNNNNNGG 2 cut(s) 540, 586
BseMI GCAATG 6 cut(s) 301, 450, 579, 917, 1520, 1716
BseMII CTCAG 1 cut(s) 1309
BseNI ACTGG 2 cut(s) 490, 707
BseRI GAGGAG 1 cut(s) 513
BseXI GCAGC 7 cut(s) 17, 189, 304, 311, 364, 990, 1668
BsgI GTGCAG 2 cut(s) 629, 1248
BshFI GGCC 5 cut(s) 489, 706, 1241, 1306, 1466
BsiHKAI GWGCWC 1 cut(s) 26
BslFI GGGAC 1 cut(s) 390
BslI CCNNNNNNNGG 2 cut(s) 540, 586
BsmAI GTCTC 4 cut(s) 11, 778, 1574, 1838
BsmBI CGTCTC 1 cut(s) 11
BsmFI GGGAC 1 cut(s) 390
BsmI GAATGC 2 cut(s) 700, 967
BsnI GGCC 5 cut(s) 489, 706, 1241, 1306, 1466
Bso31I GGTCTC 1 cut(s) 1574
Bsp119I TTCGAA 1 cut(s) 76
Bsp1286I GDGCHC 2 cut(s) 26, 505
Bsp143I GATC 5 cut(s) 664, 982, 1102, 1205, 1756
BspACI CCGC 1 cut(s) 1825
BspANI GGCC 5 cut(s) 489, 706, 1241, 1306, 1466
BspCNI CTCAG 1 cut(s) 1308
BspLI GGNNCC 4 cut(s) 406, 502, 1453, 1499
BspMAI CTGCAG 1 cut(s) 382
BspMI ACCTGC 1 cut(s) 878
BspPI GGATC 3 cut(s) 672, 990, 1764
BspT104I TTCGAA 1 cut(s) 76
BspTNI GGTCTC 1 cut(s) 1574
BsrDI GCAATG 6 cut(s) 301, 450, 579, 917, 1520, 1716
BsrI ACTGG 2 cut(s) 490, 707
BssECI CCNNGG 4 cut(s) 504, 912, 1096, 1447
BssMI GATC 5 cut(s) 664, 982, 1102, 1205, 1756
BssNAI GTATAC 1 cut(s) 310
BssSI CACGAG 1 cut(s) 1610
Bst1107I GTATAC 1 cut(s) 310
Bst2BI CACGAG 1 cut(s) 1610
Bst2UI CCWGG 6 cut(s) 126, 506, 1098, 1158, 1448, 1502
Bst4CI ACNGT 3 cut(s) 581, 1233, 1796
Bst6I CTCTTC 4 cut(s) 342, 776, 1448, 1803
BstAPI GCANNNNNTGC 1 cut(s) 326
BstBI TTCGAA 1 cut(s) 76
BstC8I GCNNGC 3 cut(s) 487, 1167, 1535
BstDEI CTNAG 4 cut(s) 991, 1295, 1434, 1468
BstF5I GGATG 3 cut(s) 26, 330, 610
BstHHI GCGC 1 cut(s) 39
BstKTI GATC 5 cut(s) 667, 985, 1105, 1208, 1759
BstMAI GTCTC 4 cut(s) 11, 778, 1574, 1838
BstMBI GATC 5 cut(s) 664, 982, 1102, 1205, 1756
BstMWI GCNNNNNNNGC 2 cut(s) 199, 326
BstNI CCWGG 6 cut(s) 126, 506, 1098, 1158, 1448, 1502
BstNSI RCATGY 3 cut(s) 618, 1188, 1513
BstSCI CCNGG 6 cut(s) 124, 504, 1096, 1156, 1446, 1500
BstSFI CTRYAG 3 cut(s) 378, 643, 1028
BstV1I GCAGC 7 cut(s) 17, 189, 304, 311, 364, 990, 1668
BstV2I GAAGAC 1 cut(s) 96
BstX2I RGATCY 2 cut(s) 664, 1756
BstYI RGATCY 2 cut(s) 664, 1756
BstZ17I GTATAC 1 cut(s) 310
BsuRI GGCC 5 cut(s) 489, 706, 1241, 1306, 1466
BtrI CACGTC 1 cut(s) 1555
BtsCI GGATG 3 cut(s) 26, 330, 610
BtsI GCAGTG 1 cut(s) 324
BtsIMutI CAGTG 2 cut(s) 112, 324
BveI ACCTGC 1 cut(s) 878
Cac8I GCNNGC 3 cut(s) 487, 1167, 1535
CaiI CAGNNNCTG 2 cut(s) 305, 1142
CfoI GCGC 1 cut(s) 39
Cfr13I GGNCC 2 cut(s) 404, 465
Csp6I GTAC 9 cut(s) 544, 564, 816, 1215, 1590, 1654, 1763, 1799, 1860
CviAII CATG 9 cut(s) 357, 362, 555, 615, 1185, 1291, 1510, 1696, 1719
CviQI GTAC 9 cut(s) 544, 564, 816, 1215, 1590, 1654, 1763, 1799, 1860
DdeI CTNAG 4 cut(s) 991, 1295, 1434, 1468
DpnI GATC 5 cut(s) 666, 984, 1104, 1207, 1758
DpnII GATC 5 cut(s) 664, 982, 1102, 1205, 1756
DraI TTTAAA 1 cut(s) 934
DrdI GACNNNNNNGTC 1 cut(s) 707
DseDI GACNNNNNNGTC 1 cut(s) 707
EaeI YGGCCR 3 cut(s) 487, 1239, 1304
Eam1104I CTCTTC 4 cut(s) 342, 776, 1448, 1803
EarI CTCTTC 4 cut(s) 342, 776, 1448, 1803
Ecl136II GAGCTC 1 cut(s) 24
Eco147I AGGCCT 1 cut(s) 1466
Eco24I GRGCYC 2 cut(s) 26, 505
Eco31I GGTCTC 1 cut(s) 1574
Eco47I GGWCC 2 cut(s) 404, 465
Eco53kI GAGCTC 1 cut(s) 24
Eco57I CTGAAG 2 cut(s) 722, 1650
EcoICRI GAGCTC 1 cut(s) 24
EcoRI GAATTC 1 cut(s) 368
EcoRII CCWGG 6 cut(s) 124, 504, 1096, 1156, 1446, 1500
EcoT38I GRGCYC 2 cut(s) 26, 505
Esp3I CGTCTC 1 cut(s) 11
FaeI CATG 9 cut(s) 360, 365, 558, 618, 1188, 1294, 1513, 1699, 1722
FalI AAGNNNNNCTT 6 cut(s) 668, 700, 1427, 1459, 1643, 1675
FaqI GGGAC 1 cut(s) 390
FatI CATG 9 cut(s) 356, 361, 554, 614, 1184, 1290, 1509, 1695, 1718
FauNDI CATATG 1 cut(s) 1539
FblI GTMKAC 1 cut(s) 309
Fnu4HI GCNGC 8 cut(s) 6, 203, 300, 318, 378, 1004, 1682, 1826
FokI GGATG 3 cut(s) 13, 317, 617
FriOI GRGCYC 2 cut(s) 26, 505
Fsp4HI GCNGC 8 cut(s) 6, 203, 300, 318, 378, 1004, 1682, 1826
FspBI CTAG 6 cut(s) 824, 834, 1701, 1760, 1779, 1882
FspI TGCGCA 1 cut(s) 38
GlaI GCGC 1 cut(s) 38
GluI GCNGC 8 cut(s) 6, 203, 300, 318, 378, 1004, 1682, 1826
GsuI CTGGAG 2 cut(s) 679, 705
HaeIII GGCC 5 cut(s) 489, 706, 1241, 1306, 1466
HhaI GCGC 1 cut(s) 39
Hin1II CATG 9 cut(s) 360, 365, 558, 618, 1188, 1294, 1513, 1699, 1722
Hin6I GCGC 1 cut(s) 37
HinP1I GCGC 1 cut(s) 37
HinfI GANTC 6 cut(s) 389, 509, 728, 773, 1145, 1664
HphI GGTGA 8 cut(s) 26, 703, 902, 1112, 1146, 1516, 1541, 1646
Hpy166II GTNNAC 4 cut(s) 310, 638, 1507, 1799
Hpy188I TCNGA 7 cut(s) 230, 672, 741, 960, 1138, 1564, 1740
Hpy188III TCNNGA 8 cut(s) 527, 658, 722, 1064, 1388, 1647, 1668, 1805
Hpy8I GTNNAC 4 cut(s) 310, 638, 1507, 1799
HpyAV CCTTC 5 cut(s) 420, 746, 805, 1625, 1807
HpyCH4III ACNGT 3 cut(s) 581, 1233, 1796
HpyCH4IV ACGT 2 cut(s) 789, 1554
HpyCH4V TGCA 9 cut(s) 299, 320, 380, 610, 698, 922, 1075, 1265, 1513
HpyF10VI GCNNNNNNNGC 2 cut(s) 199, 326
HpyF3I CTNAG 4 cut(s) 991, 1295, 1434, 1468
HpySE526I ACGT 2 cut(s) 789, 1554
Hsp92II CATG 9 cut(s) 360, 365, 558, 618, 1188, 1294, 1513, 1699, 1722
HspAI GCGC 1 cut(s) 37
Kzo9I GATC 5 cut(s) 664, 982, 1102, 1205, 1756
LmnI GCTCC 3 cut(s) 500, 724, 1503
Lsp1109I GCAGC 7 cut(s) 17, 189, 304, 311, 364, 990, 1668
LweI GCATC 3 cut(s) 520, 706, 1129
MaeI CTAG 6 cut(s) 824, 834, 1701, 1760, 1779, 1882
MaeII ACGT 2 cut(s) 789, 1554
MaeIII GTNAC 4 cut(s) 128, 581, 1397, 1481
MalI GATC 5 cut(s) 666, 984, 1104, 1207, 1758
MboI GATC 5 cut(s) 664, 982, 1102, 1205, 1756
MflI RGATCY 2 cut(s) 664, 1756
MhlI GDGCHC 2 cut(s) 26, 505
MlsI TGGCCA 2 cut(s) 489, 1306
MluNI TGGCCA 2 cut(s) 489, 1306
MlyI GAGTC 2 cut(s) 737, 1658
MmeI TCCRAC 1 cut(s) 1821
Mox20I TGGCCA 2 cut(s) 489, 1306
MroXI GAANNNNTTC 2 cut(s) 101, 1861
MscI TGGCCA 2 cut(s) 489, 1306
MslI CAYNNNNRTG 2 cut(s) 294, 945
Msp20I TGGCCA 2 cut(s) 489, 1306
MspR9I CCNGG 6 cut(s) 126, 506, 1098, 1158, 1448, 1502
Mva1269I GAATGC 2 cut(s) 700, 967
MvaI CCWGG 6 cut(s) 126, 506, 1098, 1158, 1448, 1502
MwoI GCNNNNNNNGC 2 cut(s) 199, 326
NdeI CATATG 1 cut(s) 1539
NdeII GATC 5 cut(s) 664, 982, 1102, 1205, 1756
NlaIII CATG 9 cut(s) 360, 365, 558, 618, 1188, 1294, 1513, 1699, 1722
NlaIV GGNNCC 4 cut(s) 406, 502, 1453, 1499
NmuCI GTSAC 3 cut(s) 128, 581, 1397
NsbI TGCGCA 1 cut(s) 38
NspI RCATGY 3 cut(s) 618, 1188, 1513
NspV TTCGAA 1 cut(s) 76
PaqCI CACCTGC 1 cut(s) 878
PceI AGGCCT 1 cut(s) 1466
PciI ACATGT 2 cut(s) 614, 1184
PctI GAATGC 2 cut(s) 700, 967
PdmI GAANNNNTTC 2 cut(s) 101, 1861
PfeI GAWTC 4 cut(s) 389, 509, 773, 1145
PflMI CCANNNNNTGG 1 cut(s) 540
PkrI GCNGC 8 cut(s) 7, 204, 301, 319, 379, 1005, 1683, 1827
PleI GAGTC 2 cut(s) 736, 1658
PpsI GAGTC 2 cut(s) 736, 1658
PscI ACATGT 2 cut(s) 614, 1184
PsiI TTATAA 1 cut(s) 623
Psp124BI GAGCTC 1 cut(s) 26
Psp6I CCWGG 6 cut(s) 124, 504, 1096, 1156, 1446, 1500
PspGI CCWGG 6 cut(s) 124, 504, 1096, 1156, 1446, 1500
PspN4I GGNNCC 4 cut(s) 406, 502, 1453, 1499
PspPI GGNCC 2 cut(s) 404, 465
PstI CTGCAG 1 cut(s) 382
PstNI CAGNNNCTG 2 cut(s) 305, 1142
PsuI RGATCY 2 cut(s) 664, 1756
RsaI GTAC 9 cut(s) 545, 565, 817, 1216, 1591, 1655, 1764, 1800, 1861
RsaNI GTAC 9 cut(s) 544, 564, 816, 1215, 1590, 1654, 1763, 1799, 1860
RseI CAYNNNNRTG 2 cut(s) 294, 945
SacI GAGCTC 1 cut(s) 26
SatI GCNGC 8 cut(s) 6, 203, 300, 318, 378, 1004, 1682, 1826
Sau3AI GATC 5 cut(s) 664, 982, 1102, 1205, 1756
Sau96I GGNCC 2 cut(s) 404, 465
ScaI AGTACT 1 cut(s) 1861
SchI GAGTC 2 cut(s) 737, 1658
ScrFI CCNGG 6 cut(s) 126, 506, 1098, 1158, 1448, 1502
SduI GDGCHC 2 cut(s) 26, 505
SfaNI GCATC 3 cut(s) 520, 706, 1129
SfcI CTRYAG 3 cut(s) 378, 643, 1028
SfuI TTCGAA 1 cut(s) 76
SinI GGWCC 2 cut(s) 404, 465
SmiMI CAYNNNNRTG 2 cut(s) 294, 945
SmlI CTYRAG 2 cut(s) 1666, 1803
SmoI CTYRAG 2 cut(s) 1666, 1803
SpeI ACTAGT 2 cut(s) 833, 1700
SseBI AGGCCT 1 cut(s) 1466
SsiI CCGC 1 cut(s) 1825
SspI AATATT 1 cut(s) 1329
SspMI CTAG 6 cut(s) 824, 834, 1701, 1760, 1779, 1882
SstI GAGCTC 1 cut(s) 26
StuI AGGCCT 1 cut(s) 1466
StyD4I CCNGG 6 cut(s) 124, 504, 1096, 1156, 1446, 1500
TaaI ACNGT 3 cut(s) 581, 1233, 1796
TaiI ACGT 2 cut(s) 792, 1557
TaqI TCGA 3 cut(s) 76, 496, 1835
TatI WGTACW 2 cut(s) 1653, 1859
TauI GCSGC 1 cut(s) 1828
TfiI GAWTC 4 cut(s) 389, 509, 773, 1145
TscAI CASTG 2 cut(s) 112, 331
TseFI GTSAC 3 cut(s) 128, 581, 1397
TseI GCWGC 7 cut(s) 5, 202, 299, 317, 377, 1003, 1681
Tsp45I GTSAC 3 cut(s) 128, 581, 1397
TspDTI ATGAA 6 cut(s) 360, 378, 543, 590, 794, 1707
TspGWI ACGGA 2 cut(s) 165, 957
TspRI CASTG 2 cut(s) 112, 331
Van91I CCANNNNNTGG 1 cut(s) 540
VpaK11BI GGWCC 2 cut(s) 404, 465
XapI RAATTY 4 cut(s) 338, 368, 1033, 1310
XceI RCATGY 3 cut(s) 618, 1188, 1513
XmiI GTMKAC 1 cut(s) 309
XmnI GAANNNNTTC 2 cut(s) 101, 1861
XspI CTAG 6 cut(s) 824, 834, 1701, 1760, 1779, 1882
ZrmI AGTACT 1 cut(s) 1861
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.