Rroxscaffold_5G00383770

Belongs to the class-I aminoacyl-tRNA synthetase family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000005
OG0018032
Physical Location & Seq
Reverse (-)
63348159 .. 63351463
3305 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_5G00383770.1

Sequence Viewer

Length: 1095 bp
ATGGAAATCAATCACTGTTTCTTGTCGTTTGTAGTTTCTGAAACATTAGTGCAACTTTCAGGCCTACAGAAAACCAAGATTGCAGATCTAATGGCAGCTGAAGGTGAGACGAGCTCATCCACACTGCGCAATAGAGAGTTTCTCCTGGAAATTGAGGCTAAAGTTCGAGAATGGTGGGAAAACAAGAAAGTTTTCAGTGCTGAATGTGAAAAGCCTGGGGACAAATTCTTTGGAAAATTCCCCTTTGATAGCTTTATGGGAAATCCATTCTCACTCTCCAAGCTAGACCAGTCTGCATATCTACCAGCTTTTCCTGTTGATGTCATGCGATTTGCTTTGGCGTATGTTTGTGATGGTACTGTTGATGAGGCGAAAATCAACTTTCTACATAGCATTGCAGATTCTGTATTTGATACTGCAACTACGGCCATCCTAAAATTCACTGAAGAGATATCATGGCATGAAGAATTTTTGGCTGCAGATTTTGATTCTTGTTTGAGATGTGGTCCCCCTTCTACTTTCGCAGACAAGGTGTTTGCCAATGAGATAAACATTGCTTTGAACAGGACCAAGCAGCAATACGAGGCTGACCAGTTTCGAGAAGCCCTGGATTCTATTTTTGAGCTTCAAGATGCCAGAAATTGGTACAAGAGTTCATGTGGTGGCACAAATGCAATGAACCGTGACTTAGTGTGGCGTTTTATGGATGTGCAGACATGTCTTATAACTCCAATCTGTCCACACTATGCGGAATATGTCTGGAGGGATCTTTTGTACAAGATAGACTTTGTGGTGAATGCAGACTGGCCTGTGGCTGATGCTTCAGATGATTCAACCCTCCAGAGTGCCAATAAGTATTTGAAAGACTTAATTGATTCAATGAAGAAGCAGACTGAAATTGAGAGAAATAAGAAGGGTACTGCTCCAGCTACATCTAGCTTGACAGAAGAAAGCCAAAACTTAGAAGCTCTTATATACGTTAATGAGGCATGTGATACTCTTACTTTTGCTACAAAGGGATTGCATACAGATTATGGACAAAACGAAGATGAGCTGAAGCAGAATGAGGGGTTAAATTTGGGGCTCAAGCCTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000323 GO:0001101 GO:0003674 GO:0003824 GO:0004812 GO:0004819 GO:0004823 GO:0004832 GO:0005096 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005737 GO:0005764 GO:0005773 GO:0005783 GO:0005829 GO:0005911 GO:0006082 GO:0006139 GO:0006399 GO:0006412 GO:0006418 GO:0006425 GO:0006429 GO:0006438 GO:0006518 GO:0006520 GO:0006605 GO:0006622 GO:0006623 GO:0006725 GO:0006807 GO:0006810 GO:0006886 GO:0006950 GO:0007034 GO:0007041 GO:0007154 GO:0008047 GO:0008104 GO:0008150 GO:0008152 GO:0008361 GO:0009058 GO:0009059 GO:0009267 GO:0009506 GO:0009507 GO:0009536 GO:0009605 GO:0009719 GO:0009892 GO:0009894 GO:0009895 GO:0009966 GO:0009967 GO:0009987 GO:0009991 GO:0010033 GO:0010243 GO:0010467 GO:0010506 GO:0010507 GO:0010646 GO:0010647 GO:0012505 GO:0015031 GO:0015833 GO:0016043 GO:0016070 GO:0016604 GO:0016874 GO:0016875 GO:0017101 GO:0019222 GO:0019538 GO:0019752 GO:0023051 GO:0023056 GO:0030054 GO:0030234 GO:0030695 GO:0031323 GO:0031324 GO:0031329 GO:0031330 GO:0031667 GO:0031668 GO:0031669 GO:0031974 GO:0031981 GO:0032006 GO:0032008 GO:0032535 GO:0032991 GO:0033036 GO:0033365 GO:0033554 GO:0034198 GO:0034613 GO:0034641 GO:0034645 GO:0034660 GO:0042221 GO:0042594 GO:0042886 GO:0043038 GO:0043039 GO:0043043 GO:0043085 GO:0043087 GO:0043170 GO:0043200 GO:0043201 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043436 GO:0043547 GO:0043603 GO:0043604 GO:0044093 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044281 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044446 GO:0044451 GO:0044464 GO:0045184 GO:0046483 GO:0046907 GO:0048518 GO:0048519 GO:0048522 GO:0048523 GO:0048583 GO:0048584 GO:0050789 GO:0050790 GO:0050794 GO:0050896 GO:0051179 GO:0051234 GO:0051336 GO:0051345 GO:0051641 GO:0051649 GO:0051716 GO:0055044 GO:0060589 GO:0061462 GO:0065007 GO:0065008 GO:0065009 GO:0070013 GO:0070727 GO:0070887 GO:0071229 GO:0071230 GO:0071233 GO:0071310 GO:0071417 GO:0071495 GO:0071496 GO:0071702 GO:0071704 GO:0071705 GO:0071840 GO:0072594 GO:0072665 GO:0072666 GO:0090066 GO:0090304 GO:0098772 GO:0140098 GO:0140101 GO:1901360 GO:1901564 GO:1901566 GO:1901576 GO:1901698 GO:1901699 GO:1901700 GO:1901701 GO:1902531 GO:1902533 GO:1903432 GO:1904263 GO:1990253 GO:1990928
KEGG Pathways
Metabolic & Signaling
ko00970 map00970
Pfam Domains
Protein Families
Anticodon_1 tRNA-synt_1

Protein Analysis

364

Amino Acids

41.28

Weight (kDa)

4.65

Isoelectric Point (pI)

46.81

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Anticodon_1 PF08264 176 - 305 1.6e-14 Anticodon-binding domain of tRNA ligase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0018032)

Species Orthologous Gene IDs
fragaria_vesca FvH4_4g33690 FvH4_4g33700
rosa_chinensis RchiOBHm_Chr4g0443171
rosa_laevigata RLG00000005950
rosa_multiflora Rmu_sc0007968.1_g000006
rosa_roxburghii Rroxscaffold_5G00383770
rosa_rugosa Rorug04G0344700
rosa_samantha Rh4BG410800 Rh4CG426300 Rh4DG405900
rosa_wichuraiana Rw4G034420

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 725
Acc16I TGCGCA 1 cut(s) 128
AccB7I CCANNNNNTGG 1 cut(s) 642
AciI CCGC 1 cut(s) 749
AclWI GGATC 1 cut(s) 774
AcoI YGGCCR 1 cut(s) 426
AcsI RAATTY 5 cut(s) 224, 236, 437, 467, 1075
AcuI CTGAAG 4 cut(s) 120, 465, 807, 1076
AfaI GTAC 4 cut(s) 358, 647, 776, 919
AfiI CCNNNNNNNGG 1 cut(s) 642
AflIII ACRYGT 1 cut(s) 716
AgsI TTSAA 5 cut(s) 562, 629, 834, 862, 879
AjnI CCWGG 3 cut(s) 144, 214, 606
Alw21I GWGCWC 1 cut(s) 116
Alw26I GTCTC 1 cut(s) 101
AlwI GGATC 1 cut(s) 774
AlwNI CAGNNNCTG 1 cut(s) 404
AoxI GGCC 3 cut(s) 61, 426, 806
ApeKI GCWGC 3 cut(s) 95, 476, 574
ApoI RAATTY 5 cut(s) 224, 236, 437, 467, 1075
ArsI GACNNNNNNTTYG 4 cut(s) 212, 244, 518, 550
Asp700I GAANNNNTTC 1 cut(s) 191
AspLEI GCGC 1 cut(s) 129
AspS9I GGNCC 2 cut(s) 506, 567
AsuHPI GGTGA 2 cut(s) 116, 805
AvaII GGWCC 2 cut(s) 506, 567
BaeI ACNNNNGTAYC 2 cut(s) 637, 670
BanII GRGCYC 2 cut(s) 116, 1086
Bbv12I GWGCWC 1 cut(s) 116
BbvI GCAGC 3 cut(s) 107, 463, 586
BccI CCATC 2 cut(s) 347, 437
BceAI ACGGC 1 cut(s) 441
BciT130I CCWGG 3 cut(s) 146, 216, 608
BcoDI GTCTC 1 cut(s) 101
BfaI CTAG 2 cut(s) 284, 936
BfmI CTRYAG 2 cut(s) 65, 477
BglII AGATCT 1 cut(s) 85
BisI GCNGC 3 cut(s) 96, 477, 575
BlsI GCNGC 3 cut(s) 97, 478, 576
Bme1390I CCNGG 3 cut(s) 146, 216, 608
Bme18I GGWCC 2 cut(s) 506, 567
BmgT120I GGNCC 2 cut(s) 506, 567
BmiI GGNNCC 1 cut(s) 508
BmrFI CCNGG 3 cut(s) 146, 216, 608
BmsI GCATC 2 cut(s) 622, 808
BplI GAGNNNNNCTC 4 cut(s) 98, 130, 126, 158
BpmI CTGGAG 3 cut(s) 781, 824, 909
BpuEI CTTGAG 1 cut(s) 1070
BsaJI CCNNGG 2 cut(s) 215, 606
Bsc4I CCNNNNNNNGG 1 cut(s) 642
Bse1I ACTGG 3 cut(s) 289, 592, 809
Bse3DI GCAATG 3 cut(s) 393, 552, 681
BseBI CCWGG 3 cut(s) 146, 216, 608
BseDI CCNNGG 2 cut(s) 215, 606
BseGI GGATG 3 cut(s) 116, 429, 712
BseLI CCNNNNNNNGG 1 cut(s) 642
BseMI GCAATG 3 cut(s) 393, 552, 681
BseNI ACTGG 3 cut(s) 289, 592, 809
BseXI GCAGC 3 cut(s) 107, 463, 586
BsgI GTGCAG 1 cut(s) 731
BshFI GGCC 3 cut(s) 63, 428, 808
BsiHKAI GWGCWC 1 cut(s) 116
BslFI GGGAC 2 cut(s) 233, 492
BslI CCNNNNNNNGG 1 cut(s) 642
BsmAI GTCTC 1 cut(s) 101
BsmBI CGTCTC 1 cut(s) 101
BsmFI GGGAC 2 cut(s) 233, 492
BsmI GAATGC 1 cut(s) 802
BsnI GGCC 3 cut(s) 63, 428, 808
Bsp1286I GDGCHC 2 cut(s) 116, 1086
Bsp1407I TGTACA 1 cut(s) 774
Bsp143I GATC 2 cut(s) 85, 766
BspACI CCGC 1 cut(s) 749
BspANI GGCC 3 cut(s) 63, 428, 808
BspLI GGNNCC 1 cut(s) 508
BspMAI CTGCAG 1 cut(s) 481
BspPI GGATC 1 cut(s) 774
BsrDI GCAATG 3 cut(s) 393, 552, 681
BsrGI TGTACA 1 cut(s) 774
BsrI ACTGG 3 cut(s) 289, 592, 809
BssECI CCNNGG 2 cut(s) 215, 606
BssMI GATC 2 cut(s) 85, 766
Bst2UI CCWGG 3 cut(s) 146, 216, 608
Bst4CI ACNGT 3 cut(s) 17, 361, 683
Bst6I CTCTTC 1 cut(s) 441
BstAUI TGTACA 1 cut(s) 774
BstDEI CTNAG 3 cut(s) 688, 961, 1092
BstF5I GGATG 3 cut(s) 116, 429, 712
BstHHI GCGC 1 cut(s) 129
BstKTI GATC 2 cut(s) 88, 769
BstMAI GTCTC 1 cut(s) 101
BstMBI GATC 2 cut(s) 85, 766
BstMWI GCNNNNNNNGC 1 cut(s) 425
BstNI CCWGG 3 cut(s) 146, 216, 608
BstNSI RCATGY 2 cut(s) 720, 993
BstSCI CCNGG 3 cut(s) 144, 214, 606
BstSFI CTRYAG 2 cut(s) 65, 477
BstV1I GCAGC 3 cut(s) 107, 463, 586
BstX2I RGATCY 2 cut(s) 85, 766
BstYI RGATCY 2 cut(s) 85, 766
BsuRI GGCC 3 cut(s) 63, 428, 808
BtsCI GGATG 3 cut(s) 116, 429, 712
BtsI GCAGTG 1 cut(s) 122
BtsIMutI CAGTG 4 cut(s) 13, 122, 202, 441
CaiI CAGNNNCTG 1 cut(s) 404
CfoI GCGC 1 cut(s) 129
Cfr13I GGNCC 2 cut(s) 506, 567
Csp6I GTAC 4 cut(s) 357, 646, 775, 918
CviAII CATG 6 cut(s) 325, 456, 461, 657, 717, 990
CviQI GTAC 4 cut(s) 357, 646, 775, 918
DdeI CTNAG 3 cut(s) 688, 961, 1092
DpnI GATC 2 cut(s) 87, 768
DpnII GATC 2 cut(s) 85, 766
EaeI YGGCCR 1 cut(s) 426
Eam1104I CTCTTC 1 cut(s) 441
EarI CTCTTC 1 cut(s) 441
Ecl136II GAGCTC 1 cut(s) 114
Eco147I AGGCCT 1 cut(s) 63
Eco24I GRGCYC 2 cut(s) 116, 1086
Eco32I GATATC 1 cut(s) 453
Eco47I GGWCC 2 cut(s) 506, 567
Eco53kI GAGCTC 1 cut(s) 114
Eco57I CTGAAG 4 cut(s) 120, 465, 807, 1076
EcoICRI GAGCTC 1 cut(s) 114
EcoRII CCWGG 3 cut(s) 144, 214, 606
EcoRV GATATC 1 cut(s) 453
EcoT38I GRGCYC 2 cut(s) 116, 1086
Esp3I CGTCTC 1 cut(s) 101
FaeI CATG 6 cut(s) 328, 459, 464, 660, 720, 993
FalI AAGNNNNNCTT 2 cut(s) 770, 802
FaqI GGGAC 2 cut(s) 233, 492
FatI CATG 6 cut(s) 324, 455, 460, 656, 716, 989
Fnu4HI GCNGC 3 cut(s) 96, 477, 575
FokI GGATG 3 cut(s) 103, 416, 719
FriOI GRGCYC 2 cut(s) 116, 1086
Fsp4HI GCNGC 3 cut(s) 96, 477, 575
FspBI CTAG 2 cut(s) 284, 936
FspI TGCGCA 1 cut(s) 128
GlaI GCGC 1 cut(s) 128
GluI GCNGC 3 cut(s) 96, 477, 575
GsuI CTGGAG 3 cut(s) 781, 824, 909
HaeIII GGCC 3 cut(s) 63, 428, 808
HhaI GCGC 1 cut(s) 129
Hin1II CATG 6 cut(s) 328, 459, 464, 660, 720, 993
Hin6I GCGC 1 cut(s) 127
HinP1I GCGC 1 cut(s) 127
HinfI GANTC 5 cut(s) 401, 488, 611, 830, 875
HphI GGTGA 2 cut(s) 116, 805
Hpy166II GTNNAC 1 cut(s) 740
Hpy188I TCNGA 2 cut(s) 40, 826
Hpy188III TCNNGA 5 cut(s) 167, 599, 629, 760, 841
Hpy8I GTNNAC 1 cut(s) 740
HpyAV CCTTC 3 cut(s) 95, 522, 907
HpyCH4III ACNGT 3 cut(s) 17, 361, 683
HpyCH4IV ACGT 1 cut(s) 978
HpyF10VI GCNNNNNNNGC 1 cut(s) 425
HpyF3I CTNAG 3 cut(s) 688, 961, 1092
HpySE526I ACGT 1 cut(s) 978
Hsp92II CATG 6 cut(s) 328, 459, 464, 660, 720, 993
HspAI GCGC 1 cut(s) 127
Kzo9I GATC 2 cut(s) 85, 766
LmnI GCTCC 1 cut(s) 928
Lsp1109I GCAGC 3 cut(s) 107, 463, 586
LweI GCATC 2 cut(s) 622, 808
MaeI CTAG 2 cut(s) 284, 936
MaeII ACGT 1 cut(s) 978
MaeIII GTNAC 1 cut(s) 683
MalI GATC 2 cut(s) 87, 768
MboI GATC 2 cut(s) 85, 766
MboII GAAGA 5 cut(s) 458, 476, 895, 959, 1058
MflI RGATCY 2 cut(s) 85, 766
MhlI GDGCHC 2 cut(s) 116, 1086
MluCI AATT 9 cut(s) 150, 224, 236, 437, 467, 640, 870, 897, 1075
MnlI CCTC 7 cut(s) 148, 361, 577, 756, 848, 979, 1060
MroXI GAANNNNTTC 1 cut(s) 191
MseI TTAA 3 cut(s) 869, 981, 1073
MspA1I CMGCKG 1 cut(s) 98
MspR9I CCNGG 3 cut(s) 146, 216, 608
Mva1269I GAATGC 1 cut(s) 802
MvaI CCWGG 3 cut(s) 146, 216, 608
MwoI GCNNNNNNNGC 1 cut(s) 425
NdeII GATC 2 cut(s) 85, 766
NlaIII CATG 6 cut(s) 328, 459, 464, 660, 720, 993
NlaIV GGNNCC 1 cut(s) 508
NmuCI GTSAC 1 cut(s) 683
NsbI TGCGCA 1 cut(s) 128
NspI RCATGY 2 cut(s) 720, 993
PceI AGGCCT 1 cut(s) 63
PciI ACATGT 1 cut(s) 716
PctI GAATGC 1 cut(s) 802
PdmI GAANNNNTTC 1 cut(s) 191
PfeI GAWTC 5 cut(s) 401, 488, 611, 830, 875
PflMI CCANNNNNTGG 1 cut(s) 642
PfoI TCCNGGA 1 cut(s) 144
PkrI GCNGC 3 cut(s) 97, 478, 576
PscI ACATGT 1 cut(s) 716
PsiI TTATAA 1 cut(s) 725
Psp124BI GAGCTC 1 cut(s) 116
Psp6I CCWGG 3 cut(s) 144, 214, 606
PspGI CCWGG 3 cut(s) 144, 214, 606
PspN4I GGNNCC 1 cut(s) 508
PspPI GGNCC 2 cut(s) 506, 567
PstI CTGCAG 1 cut(s) 481
PstNI CAGNNNCTG 1 cut(s) 404
PsuI RGATCY 2 cut(s) 85, 766
PvuII CAGCTG 1 cut(s) 98
RsaI GTAC 4 cut(s) 358, 647, 776, 919
RsaNI GTAC 4 cut(s) 357, 646, 775, 918
SacI GAGCTC 1 cut(s) 116
SaqAI TTAA 3 cut(s) 869, 981, 1073
SatI GCNGC 3 cut(s) 96, 477, 575
Sau3AI GATC 2 cut(s) 85, 766
Sau96I GGNCC 2 cut(s) 506, 567
ScrFI CCNGG 3 cut(s) 146, 216, 608
SduI GDGCHC 2 cut(s) 116, 1086
SfaNI GCATC 2 cut(s) 622, 808
SfcI CTRYAG 2 cut(s) 65, 477
SinI GGWCC 2 cut(s) 506, 567
SmlI CTYRAG 1 cut(s) 1085
SmoI CTYRAG 1 cut(s) 1085
Sse9I AATT 9 cut(s) 150, 224, 236, 437, 467, 640, 870, 897, 1075
SseBI AGGCCT 1 cut(s) 63
SsiI CCGC 1 cut(s) 749
SspMI CTAG 2 cut(s) 284, 936
SstI GAGCTC 1 cut(s) 116
StuI AGGCCT 1 cut(s) 63
StyD4I CCNGG 3 cut(s) 144, 214, 606
TaaI ACNGT 3 cut(s) 17, 361, 683
TaiI ACGT 1 cut(s) 981
TaqI TCGA 2 cut(s) 166, 598
TasI AATT 9 cut(s) 150, 224, 236, 437, 467, 640, 870, 897, 1075
TatI WGTACW 1 cut(s) 774
TfiI GAWTC 5 cut(s) 401, 488, 611, 830, 875
Tru1I TTAA 3 cut(s) 869, 981, 1073
Tru9I TTAA 3 cut(s) 869, 981, 1073
TscAI CASTG 4 cut(s) 20, 129, 202, 448
TseFI GTSAC 1 cut(s) 683
TseI GCWGC 3 cut(s) 95, 476, 574
Tsp45I GTSAC 1 cut(s) 683
TspDTI ATGAA 4 cut(s) 477, 645, 692, 896
TspRI CASTG 4 cut(s) 20, 129, 202, 448
Van91I CCANNNNNTGG 1 cut(s) 642
VpaK11BI GGWCC 2 cut(s) 506, 567
XapI RAATTY 5 cut(s) 224, 236, 437, 467, 1075
XceI RCATGY 2 cut(s) 720, 993
XmnI GAANNNNTTC 1 cut(s) 191
XspI CTAG 2 cut(s) 284, 936
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.