FvH4_4g35400

CLAVATA3 ESR (CLE)-related protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb4
OG0012006
Physical Location & Seq
Reverse (-)
32727183 .. 32728226
1044 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_4g35400.t1

Sequence Viewer

Length: 342 bp
ATGGGTAGTGATAATTGTGTTTCTTCTTGCTTTGTTAAGGTTCTGTTGGGAACGTTTGCGGTGGTGGGCTTTATCTTGGTTTTGTTGGTTGCCACGGTAGACTTGACTACTGCTACTGATCAAGTGCAAGGAGGACGCATAGGGTCGTCAAAAACTACACCTACGACCTCATCAGCAACATCAGATCAGTTTGCAGGAACTAGTACGAAGCATGCAGATCAGAAACTTGTTCATCCGGAGCTGGATCTCAACTATATGAGCAAAAGAAGAGTTCCTAATGGACCAGATCCTATTCACAACAGGAGAACTGGCAACTCGGGGCGACCGCCTGGCCAATCTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

114

Amino Acids

11.92

Weight (kDa)

9.18

Isoelectric Point (pI)

44.22

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0012006)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G69970 AT1G69970
fragaria_vesca FvH4_4g35400
malus_domestica MD13G1083500.v1.1 MD16G1082900.v1.1
prunus_persica Prupe.1G263100_v2.0.a1
pyrus_communis pycom13g07220 pycom16g07180
rosa_chinensis RchiOBHm_Chr4g0445011
rosa_laevigata RLG00000005777
rosa_multiflora Rmu_sc0003784.1_g000023
rosa_roxburghii Rroxscaffold_5G00385540
rosa_rugosa Rorug04G0357600 Rorug04G0357600
rosa_samantha Rh4AG419200 Rh4BG430900 Rh4CG445200 Rh4DG426800
rosa_wichuraiana Rw4G035890

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 99
AccIII TCCGGA 1 cut(s) 235
AciI CCGC 2 cut(s) 59, 326
AclI AACGTT 1 cut(s) 53
AclWI GGATC 2 cut(s) 252, 281
AcoI YGGCCR 1 cut(s) 331
AfaI GTAC 1 cut(s) 205
AhlI ACTAGT 1 cut(s) 200
AjnI CCWGG 1 cut(s) 328
AluBI AGCT 1 cut(s) 241
AluI AGCT 1 cut(s) 241
AlwI GGATC 2 cut(s) 252, 281
Ama87I CYCGRG 1 cut(s) 316
Aor13HI TCCGGA 1 cut(s) 235
AoxI GGCC 1 cut(s) 331
AspS9I GGNCC 1 cut(s) 281
AvaI CYCGRG 1 cut(s) 316
AvaII GGWCC 1 cut(s) 281
BalI TGGCCA 1 cut(s) 333
BciT130I CCWGG 1 cut(s) 330
BclI TGATCA 1 cut(s) 118
BcuI ACTAGT 1 cut(s) 200
BfaI CTAG 1 cut(s) 201
Bme1390I CCNGG 1 cut(s) 330
Bme18I GGWCC 1 cut(s) 281
BmeT110I CYCGRG 1 cut(s) 316
BmgT120I GGNCC 1 cut(s) 281
BmrFI CCNGG 1 cut(s) 330
BsaJI CCNNGG 1 cut(s) 93
BsaWI WCCGGW 1 cut(s) 235
Bse1I ACTGG 1 cut(s) 313
BseAI TCCGGA 1 cut(s) 235
BseBI CCWGG 1 cut(s) 330
BseDI CCNNGG 1 cut(s) 93
BseGI GGATG 1 cut(s) 232
BseNI ACTGG 1 cut(s) 313
Bsh1285I CGRYCG 1 cut(s) 326
BshFI GGCC 1 cut(s) 333
BsiEI CGRYCG 1 cut(s) 326
BsiHKCI CYCGRG 1 cut(s) 316
BsiSI CCGG 1 cut(s) 236
BsnI GGCC 1 cut(s) 333
BsoBI CYCGRG 1 cut(s) 316
Bsp13I TCCGGA 1 cut(s) 235
Bsp143I GATC 5 cut(s) 118, 184, 217, 244, 286
BspACI CCGC 2 cut(s) 59, 326
BspANI GGCC 1 cut(s) 333
BspEI TCCGGA 1 cut(s) 235
BspPI GGATC 2 cut(s) 252, 281
BsrI ACTGG 1 cut(s) 313
BssECI CCNNGG 1 cut(s) 93
BssMI GATC 5 cut(s) 118, 184, 217, 244, 286
Bst2UI CCWGG 1 cut(s) 330
Bst4CI ACNGT 1 cut(s) 97
Bst6I CTCTTC 1 cut(s) 262
BstC8I GCNNGC 1 cut(s) 213
BstDEI CTNAG 1 cut(s) 339
BstDSI CCRYGG 1 cut(s) 93
BstF5I GGATG 1 cut(s) 232
BstKTI GATC 5 cut(s) 121, 187, 220, 247, 289
BstMBI GATC 5 cut(s) 118, 184, 217, 244, 286
BstMCI CGRYCG 1 cut(s) 326
BstNI CCWGG 1 cut(s) 330
BstNSI RCATGY 1 cut(s) 215
BstSCI CCNGG 1 cut(s) 328
BstX2I RGATCY 2 cut(s) 244, 286
BstYI RGATCY 2 cut(s) 244, 286
BsuRI GGCC 1 cut(s) 333
BtgI CCRYGG 1 cut(s) 93
BtsCI GGATG 1 cut(s) 232
Cac8I GCNNGC 1 cut(s) 213
Cfr13I GGNCC 1 cut(s) 281
CseI GACGC 1 cut(s) 144
Csp6I GTAC 1 cut(s) 204
CviAII CATG 1 cut(s) 212
CviJI RGCY 3 cut(s) 69, 241, 333
CviKI_1 RGCY 3 cut(s) 69, 241, 333
CviQI GTAC 1 cut(s) 204
DdeI CTNAG 1 cut(s) 339
DpnI GATC 5 cut(s) 120, 186, 219, 246, 288
DpnII GATC 5 cut(s) 118, 184, 217, 244, 286
EaeI YGGCCR 1 cut(s) 331
Eam1104I CTCTTC 1 cut(s) 262
EarI CTCTTC 1 cut(s) 262
Eco47I GGWCC 1 cut(s) 281
Eco88I CYCGRG 1 cut(s) 316
EcoRII CCWGG 1 cut(s) 328
FaeI CATG 1 cut(s) 215
FaiI YATR 4 cut(s) 140, 213, 255, 257
FatI CATG 1 cut(s) 211
FbaI TGATCA 1 cut(s) 118
FblI GTMKAC 1 cut(s) 99
FokI GGATG 1 cut(s) 219
FspBI CTAG 1 cut(s) 201
HaeIII GGCC 1 cut(s) 333
HapII CCGG 1 cut(s) 236
HgaI GACGC 1 cut(s) 144
Hin1II CATG 1 cut(s) 215
HpaII CCGG 1 cut(s) 236
Hpy166II GTNNAC 1 cut(s) 100
Hpy188I TCNGA 2 cut(s) 184, 222
Hpy188III TCNNGA 1 cut(s) 236
Hpy8I GTNNAC 1 cut(s) 100
HpyCH4III ACNGT 1 cut(s) 97
HpyCH4IV ACGT 1 cut(s) 53
HpyCH4V TGCA 3 cut(s) 127, 194, 215
HpyF3I CTNAG 1 cut(s) 339
HpySE526I ACGT 1 cut(s) 53
Hsp92II CATG 1 cut(s) 215
Kpn2I TCCGGA 1 cut(s) 235
Ksp22I TGATCA 1 cut(s) 118
Kzo9I GATC 5 cut(s) 118, 184, 217, 244, 286
LmnI GCTCC 1 cut(s) 238
LpnPI CCDG 7 cut(s) 180, 227, 249, 286, 294, 297, 315
MaeI CTAG 1 cut(s) 201
MaeII ACGT 1 cut(s) 53
MalI GATC 5 cut(s) 120, 186, 219, 246, 288
MboI GATC 5 cut(s) 118, 184, 217, 244, 286
MboII GAAGA 2 cut(s) 15, 279
MflI RGATCY 2 cut(s) 244, 286
MlsI TGGCCA 1 cut(s) 333
MluCI AATT 1 cut(s) 13
MluNI TGGCCA 1 cut(s) 333
MnlI CCTC 2 cut(s) 125, 178
Mox20I TGGCCA 1 cut(s) 333
MroI TCCGGA 1 cut(s) 235
MscI TGGCCA 1 cut(s) 333
MseI TTAA 1 cut(s) 36
Msp20I TGGCCA 1 cut(s) 333
MspI CCGG 1 cut(s) 236
MspR9I CCNGG 1 cut(s) 330
MvaI CCWGG 1 cut(s) 330
NdeII GATC 5 cut(s) 118, 184, 217, 244, 286
NlaIII CATG 1 cut(s) 215
NspI RCATGY 1 cut(s) 215
PaeI GCATGC 1 cut(s) 215
Psp1406I AACGTT 1 cut(s) 53
Psp6I CCWGG 1 cut(s) 328
PspGI CCWGG 1 cut(s) 328
PspPI GGNCC 1 cut(s) 281
PsuI RGATCY 2 cut(s) 244, 286
RsaI GTAC 1 cut(s) 205
RsaNI GTAC 1 cut(s) 204
SaqAI TTAA 1 cut(s) 36
Sau3AI GATC 5 cut(s) 118, 184, 217, 244, 286
Sau96I GGNCC 1 cut(s) 281
ScrFI CCNGG 1 cut(s) 330
SetI ASST 5 cut(s) 42, 56, 163, 170, 243
SinI GGWCC 1 cut(s) 281
SpeI ACTAGT 1 cut(s) 200
SphI GCATGC 1 cut(s) 215
Sse9I AATT 1 cut(s) 13
SsiI CCGC 2 cut(s) 59, 326
SspMI CTAG 1 cut(s) 201
StyD4I CCNGG 1 cut(s) 328
TaaI ACNGT 1 cut(s) 97
TaiI ACGT 1 cut(s) 56
TasI AATT 1 cut(s) 13
Tru1I TTAA 1 cut(s) 36
Tru9I TTAA 1 cut(s) 36
TspDTI ATGAA 1 cut(s) 221
VpaK11BI GGWCC 1 cut(s) 281
XceI RCATGY 1 cut(s) 215
XmiI GTMKAC 1 cut(s) 99
XspI CTAG 1 cut(s) 201
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.