MD13G1083500.v1.1

CLAVATA3 ESR (CLE)-related protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr13
OG0012006
Physical Location & Seq
Forward (+)
5856725 .. 5858923
2199 bp
Loading structure...
UTR
Exon/CDS
Intron
MD13G1083500.v1.1.491

Sequence Viewer

Length: 270 bp
ATGGGCAGTGGTGGTGTTTCTTGTTTTTTAGAGTGTTTCTTGCGAACGCTTGCGGTGGTAGGGTTTATCTGTCTTTTGCTGGTCGGAACCCTAGAGACTCAAGGAGGTACGAGTACAGCAGCCTCAAAGCATACCGATGCGGTTGGAAGAGGGAAGCTTGTTCATCCAGATTTGAATTTTAACTATATGAGCAAAAGAAGAGTTCCCAACGGACCAGATCCAATTCACAACAGAGCTGGGAACTCGGGACGGCCCCCGGGTCAAGCTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

90

Amino Acids

9.32

Weight (kDa)

9.41

Isoelectric Point (pI)

40.43

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0012006)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G69970 AT1G69970
fragaria_vesca FvH4_4g35400
malus_domestica MD13G1083500.v1.1 MD16G1082900.v1.1
prunus_persica Prupe.1G263100_v2.0.a1
pyrus_communis pycom13g07220 pycom16g07180
rosa_chinensis RchiOBHm_Chr4g0445011
rosa_laevigata RLG00000005777
rosa_multiflora Rmu_sc0003784.1_g000023
rosa_roxburghii Rroxscaffold_5G00385540
rosa_rugosa Rorug04G0357600 Rorug04G0357600
rosa_samantha Rh4AG419200 Rh4BG430900 Rh4CG445200 Rh4DG426800
rosa_wichuraiana Rw4G035890

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 2 cut(s) 53, 140
AclWI GGATC 1 cut(s) 212
AcsI RAATTY 1 cut(s) 175
AfaI GTAC 2 cut(s) 109, 115
AgsI TTSAA 1 cut(s) 175
AluBI AGCT 3 cut(s) 157, 236, 266
AluI AGCT 3 cut(s) 157, 236, 266
Alw26I GTCTC 1 cut(s) 89
AlwI GGATC 1 cut(s) 212
Ama87I CYCGRG 2 cut(s) 244, 256
AoxI GGCC 1 cut(s) 251
ApeKI GCWGC 1 cut(s) 119
ApoI RAATTY 1 cut(s) 175
AspS9I GGNCC 2 cut(s) 212, 252
AsuC2I CCSGG 2 cut(s) 257, 258
AvaI CYCGRG 2 cut(s) 244, 256
AvaII GGWCC 1 cut(s) 212
BbvI GCAGC 1 cut(s) 131
BceAI ACGGC 1 cut(s) 266
BcnI CCSGG 2 cut(s) 257, 258
BcoDI GTCTC 1 cut(s) 89
BfaI CTAG 1 cut(s) 92
BisI GCNGC 1 cut(s) 120
BlsI GCNGC 1 cut(s) 121
Bme1390I CCNGG 2 cut(s) 257, 258
Bme18I GGWCC 1 cut(s) 212
BmeT110I CYCGRG 2 cut(s) 244, 256
BmgT120I GGNCC 2 cut(s) 212, 252
BmiI GGNNCC 2 cut(s) 88, 254
BmrFI CCNGG 2 cut(s) 257, 258
BmsI GCATC 1 cut(s) 127
BpuEI CTTGAG 1 cut(s) 84
BpuMI CCSGG 2 cut(s) 257, 258
BsaJI CCNNGG 2 cut(s) 255, 256
BseDI CCNNGG 2 cut(s) 255, 256
BseGI GGATG 1 cut(s) 163
BseXI GCAGC 1 cut(s) 131
BseYI CCCAGC 1 cut(s) 236
BshFI GGCC 1 cut(s) 253
BsiHKCI CYCGRG 2 cut(s) 244, 256
BsiSI CCGG 1 cut(s) 257
BslFI GGGAC 1 cut(s) 261
BsmAI GTCTC 1 cut(s) 89
BsmFI GGGAC 1 cut(s) 261
BsnI GGCC 1 cut(s) 253
BsoBI CYCGRG 2 cut(s) 244, 256
Bsp143I GATC 1 cut(s) 217
BspACI CCGC 2 cut(s) 53, 140
BspANI GGCC 1 cut(s) 253
BspLI GGNNCC 2 cut(s) 88, 254
BspPI GGATC 1 cut(s) 212
BssECI CCNNGG 2 cut(s) 255, 256
BssMI GATC 1 cut(s) 217
Bst6I CTCTTC 2 cut(s) 142, 193
BstC8I GCNNGC 1 cut(s) 51
BstDEI CTNAG 1 cut(s) 267
BstF5I GGATG 1 cut(s) 163
BstKTI GATC 1 cut(s) 220
BstMAI GTCTC 1 cut(s) 89
BstMBI GATC 1 cut(s) 217
BstSCI CCNGG 2 cut(s) 255, 256
BstV1I GCAGC 1 cut(s) 131
BstX2I RGATCY 1 cut(s) 217
BstYI RGATCY 1 cut(s) 217
BsuRI GGCC 1 cut(s) 253
BtsCI GGATG 1 cut(s) 163
BtsI GCAGTG 1 cut(s) 13
BtsIMutI CAGTG 1 cut(s) 13
Cac8I GCNNGC 1 cut(s) 51
Cfr13I GGNCC 2 cut(s) 212, 252
Cfr9I CCCGGG 1 cut(s) 256
Csp6I GTAC 2 cut(s) 108, 114
CviJI RGCY 5 cut(s) 122, 157, 236, 253, 266
CviKI_1 RGCY 5 cut(s) 122, 157, 236, 253, 266
CviQI GTAC 2 cut(s) 108, 114
DdeI CTNAG 1 cut(s) 267
DpnI GATC 1 cut(s) 219
DpnII GATC 1 cut(s) 217
Eam1104I CTCTTC 2 cut(s) 142, 193
EarI CTCTTC 2 cut(s) 142, 193
Eco47I GGWCC 1 cut(s) 212
Eco88I CYCGRG 2 cut(s) 244, 256
FaiI YATR 3 cut(s) 132, 186, 188
FaqI GGGAC 1 cut(s) 261
Fnu4HI GCNGC 1 cut(s) 120
FokI GGATG 1 cut(s) 150
Fsp4HI GCNGC 1 cut(s) 120
FspBI CTAG 1 cut(s) 92
GluI GCNGC 1 cut(s) 120
GsaI CCCAGC 1 cut(s) 240
HaeIII GGCC 1 cut(s) 253
HapII CCGG 1 cut(s) 257
HindIII AAGCTT 2 cut(s) 155, 264
HinfI GANTC 1 cut(s) 97
HpaII CCGG 1 cut(s) 257
Hpy188I TCNGA 1 cut(s) 86
Hpy188III TCNNGA 2 cut(s) 167, 246
HpyF3I CTNAG 1 cut(s) 267
Kzo9I GATC 1 cut(s) 217
LpnPI CCDG 4 cut(s) 65, 180, 222, 228
Lsp1109I GCAGC 1 cut(s) 131
LweI GCATC 1 cut(s) 127
MaeI CTAG 1 cut(s) 92
MalI GATC 1 cut(s) 219
MboI GATC 1 cut(s) 217
MboII GAAGA 2 cut(s) 159, 210
MflI RGATCY 1 cut(s) 217
MluCI AATT 2 cut(s) 175, 222
MlyI GAGTC 1 cut(s) 91
MmeI TCCRAC 2 cut(s) 64, 124
MnlI CCTC 3 cut(s) 98, 133, 143
MseI TTAA 1 cut(s) 180
MslI CAYNNNNRTG 1 cut(s) 135
MspI CCGG 1 cut(s) 257
MspR9I CCNGG 2 cut(s) 257, 258
NciI CCSGG 2 cut(s) 257, 258
NdeII GATC 1 cut(s) 217
NlaIV GGNNCC 2 cut(s) 88, 254
PkrI GCNGC 1 cut(s) 121
PleI GAGTC 1 cut(s) 91
PpsI GAGTC 1 cut(s) 91
PspFI CCCAGC 1 cut(s) 236
PspN4I GGNNCC 2 cut(s) 88, 254
PspPI GGNCC 2 cut(s) 212, 252
PsuI RGATCY 1 cut(s) 217
RsaI GTAC 2 cut(s) 109, 115
RsaNI GTAC 2 cut(s) 108, 114
RseI CAYNNNNRTG 1 cut(s) 135
SaqAI TTAA 1 cut(s) 180
SatI GCNGC 1 cut(s) 120
Sau3AI GATC 1 cut(s) 217
Sau96I GGNCC 2 cut(s) 212, 252
SchI GAGTC 1 cut(s) 91
ScrFI CCNGG 2 cut(s) 257, 258
SetI ASST 4 cut(s) 109, 159, 238, 268
SfaNI GCATC 1 cut(s) 127
SinI GGWCC 1 cut(s) 212
SmaI CCCGGG 1 cut(s) 258
SmiMI CAYNNNNRTG 1 cut(s) 135
SmlI CTYRAG 1 cut(s) 99
SmoI CTYRAG 1 cut(s) 99
Sse9I AATT 2 cut(s) 175, 222
SsiI CCGC 2 cut(s) 53, 140
SspMI CTAG 1 cut(s) 92
StyD4I CCNGG 2 cut(s) 255, 256
TasI AATT 2 cut(s) 175, 222
TatI WGTACW 1 cut(s) 113
Tru1I TTAA 1 cut(s) 180
Tru9I TTAA 1 cut(s) 180
TscAI CASTG 1 cut(s) 13
TseI GCWGC 1 cut(s) 119
TspDTI ATGAA 1 cut(s) 152
TspGWI ACGGA 1 cut(s) 225
TspMI CCCGGG 1 cut(s) 256
TspRI CASTG 1 cut(s) 13
VpaK11BI GGWCC 1 cut(s) 212
XapI RAATTY 1 cut(s) 175
XmaI CCCGGG 1 cut(s) 256
XspI CTAG 1 cut(s) 92
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.