Prupe.1G263100_v2.0.a1

CLAVATA3 ESR (CLE)-related protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp01
OG0012006
Physical Location & Seq
Reverse (-)
27150158 .. 27152338
2181 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.1G263100.1

Sequence Viewer

Length: 312 bp
ATGGCTAGTAGTGGTGGTGTTTCTTGCTTTTTAAAGCTATTCTTTGGAACGCTTGCAGTGATGGGGTTTATTTGTGTTTTGTTAGTTGGTACCCTAGAAACTCAAGGAGGGCTGACTAAAACAGCAACCTCAACGGCGGCAGCGCCAGAGTCATTTTCAGAAAAGCCTGCGGATGTGGTAGGAAGAGAGAACAAGCTTGTTCATCCAGAGTTGGATCTCAACTATATGAGTAAAAGAAGAGTTCCCAATGGACCAGATCCTATTCACAACAGGAGAGCCGGGAGCTCGGGACGGCCCCCTGGTCAAGCTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

104

Amino Acids

10.82

Weight (kDa)

9.18

Isoelectric Point (pI)

54.22

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0012006)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G69970 AT1G69970
fragaria_vesca FvH4_4g35400
malus_domestica MD13G1083500.v1.1 MD16G1082900.v1.1
prunus_persica Prupe.1G263100_v2.0.a1
pyrus_communis pycom13g07220 pycom16g07180
rosa_chinensis RchiOBHm_Chr4g0445011
rosa_laevigata RLG00000005777
rosa_multiflora Rmu_sc0003784.1_g000023
rosa_roxburghii Rroxscaffold_5G00385540
rosa_rugosa Rorug04G0357600 Rorug04G0357600
rosa_samantha Rh4AG419200 Rh4BG430900 Rh4CG445200 Rh4DG426800
rosa_wichuraiana Rw4G035890

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 89
AccB1I GGYRCC 1 cut(s) 89
AciI CCGC 2 cut(s) 137, 170
AclWI GGATC 2 cut(s) 222, 251
AfaI GTAC 1 cut(s) 91
AjnI CCWGG 1 cut(s) 298
AluBI AGCT 4 cut(s) 37, 196, 285, 308
AluI AGCT 4 cut(s) 37, 196, 285, 308
Alw21I GWGCWC 1 cut(s) 287
AlwI GGATC 2 cut(s) 222, 251
Ama87I CYCGRG 1 cut(s) 286
AoxI GGCC 1 cut(s) 293
ApeKI GCWGC 1 cut(s) 140
Asp718I GGTACC 1 cut(s) 89
AspLEI GCGC 1 cut(s) 145
AspS9I GGNCC 2 cut(s) 251, 294
AsuC2I CCSGG 1 cut(s) 280
AvaI CYCGRG 1 cut(s) 286
AvaII GGWCC 1 cut(s) 251
BanI GGYRCC 1 cut(s) 89
BanII GRGCYC 1 cut(s) 287
Bbv12I GWGCWC 1 cut(s) 287
BbvI GCAGC 1 cut(s) 152
BccI CCATC 1 cut(s) 55
BceAI ACGGC 2 cut(s) 150, 308
BciT130I CCWGG 1 cut(s) 300
BcnI CCSGG 1 cut(s) 280
BfaI CTAG 2 cut(s) 6, 95
BfoI RGCGCY 1 cut(s) 146
BisI GCNGC 2 cut(s) 138, 141
BlsI GCNGC 2 cut(s) 139, 142
Bme1390I CCNGG 2 cut(s) 280, 300
Bme18I GGWCC 1 cut(s) 251
BmeT110I CYCGRG 1 cut(s) 286
BmgT120I GGNCC 2 cut(s) 251, 294
BmiI GGNNCC 2 cut(s) 91, 296
BmrFI CCNGG 2 cut(s) 280, 300
BpuEI CTTGAG 1 cut(s) 87
BpuMI CCSGG 1 cut(s) 280
BsaJI CCNNGG 1 cut(s) 298
BseBI CCWGG 1 cut(s) 300
BseDI CCNNGG 1 cut(s) 298
BseGI GGATG 2 cut(s) 178, 202
BseXI GCAGC 1 cut(s) 152
BshFI GGCC 1 cut(s) 295
BshNI GGYRCC 1 cut(s) 89
BsiHKAI GWGCWC 1 cut(s) 287
BsiHKCI CYCGRG 1 cut(s) 286
BsiSI CCGG 1 cut(s) 279
BslFI GGGAC 1 cut(s) 303
BsmFI GGGAC 1 cut(s) 303
BsnI GGCC 1 cut(s) 295
BsoBI CYCGRG 1 cut(s) 286
Bsp1286I GDGCHC 1 cut(s) 287
Bsp143I GATC 2 cut(s) 214, 256
BspACI CCGC 2 cut(s) 137, 170
BspANI GGCC 1 cut(s) 295
BspLI GGNNCC 2 cut(s) 91, 296
BspPI GGATC 2 cut(s) 222, 251
BspT107I GGYRCC 1 cut(s) 89
BssECI CCNNGG 1 cut(s) 298
BssMI GATC 2 cut(s) 214, 256
Bst2UI CCWGG 1 cut(s) 300
Bst6I CTCTTC 2 cut(s) 178, 232
BstC8I GCNNGC 2 cut(s) 54, 168
BstDEI CTNAG 1 cut(s) 309
BstF5I GGATG 2 cut(s) 178, 202
BstH2I RGCGCY 1 cut(s) 146
BstHHI GCGC 1 cut(s) 145
BstKTI GATC 2 cut(s) 217, 259
BstMBI GATC 2 cut(s) 214, 256
BstNI CCWGG 1 cut(s) 300
BstSCI CCNGG 2 cut(s) 278, 298
BstV1I GCAGC 1 cut(s) 152
BstX2I RGATCY 2 cut(s) 214, 256
BstYI RGATCY 2 cut(s) 214, 256
BsuRI GGCC 1 cut(s) 295
BtsCI GGATG 2 cut(s) 178, 202
BtsI GCAGTG 1 cut(s) 63
BtsIMutI CAGTG 1 cut(s) 63
Cac8I GCNNGC 2 cut(s) 54, 168
CfoI GCGC 1 cut(s) 145
Cfr13I GGNCC 2 cut(s) 251, 294
Csp6I GTAC 1 cut(s) 90
CviJI RGCY 9 cut(s) 5, 37, 112, 166, 196, 278, 285, 295, 308
CviKI_1 RGCY 9 cut(s) 5, 37, 112, 166, 196, 278, 285, 295, 308
CviQI GTAC 1 cut(s) 90
DdeI CTNAG 1 cut(s) 309
DpnI GATC 2 cut(s) 216, 258
DpnII GATC 2 cut(s) 214, 256
DraI TTTAAA 1 cut(s) 33
Eam1104I CTCTTC 2 cut(s) 178, 232
EarI CTCTTC 2 cut(s) 178, 232
Ecl136II GAGCTC 1 cut(s) 285
Eco24I GRGCYC 1 cut(s) 287
Eco47I GGWCC 1 cut(s) 251
Eco53kI GAGCTC 1 cut(s) 285
Eco88I CYCGRG 1 cut(s) 286
EcoICRI GAGCTC 1 cut(s) 285
EcoRII CCWGG 1 cut(s) 298
EcoT38I GRGCYC 1 cut(s) 287
FaiI YATR 2 cut(s) 225, 227
FalI AAGNNNNNCTT 2 cut(s) 26, 58
FaqI GGGAC 1 cut(s) 303
Fnu4HI GCNGC 2 cut(s) 138, 141
FokI GGATG 2 cut(s) 185, 189
FriOI GRGCYC 1 cut(s) 287
Fsp4HI GCNGC 2 cut(s) 138, 141
FspBI CTAG 2 cut(s) 6, 95
GlaI GCGC 1 cut(s) 144
GluI GCNGC 2 cut(s) 138, 141
HaeII RGCGCY 1 cut(s) 146
HaeIII GGCC 1 cut(s) 295
HapII CCGG 1 cut(s) 279
HhaI GCGC 1 cut(s) 145
Hin6I GCGC 1 cut(s) 143
HinP1I GCGC 1 cut(s) 143
HindIII AAGCTT 2 cut(s) 194, 306
HinfI GANTC 1 cut(s) 149
HpaII CCGG 1 cut(s) 279
Hpy188I TCNGA 1 cut(s) 160
Hpy188III TCNNGA 2 cut(s) 206, 288
HpyCH4V TGCA 1 cut(s) 56
HpyF3I CTNAG 1 cut(s) 309
HspAI GCGC 1 cut(s) 143
KpnI GGTACC 1 cut(s) 93
Kzo9I GATC 2 cut(s) 214, 256
LmnI GCTCC 1 cut(s) 282
LpnPI CCDG 7 cut(s) 159, 180, 219, 256, 267, 285, 292
Lsp1109I GCAGC 1 cut(s) 152
MaeI CTAG 2 cut(s) 6, 95
MalI GATC 2 cut(s) 216, 258
MboI GATC 2 cut(s) 214, 256
MboII GAAGA 2 cut(s) 195, 249
MflI RGATCY 2 cut(s) 214, 256
MhlI GDGCHC 1 cut(s) 287
MlyI GAGTC 1 cut(s) 158
MmeI TCCRAC 1 cut(s) 192
MnlI CCTC 2 cut(s) 101, 139
MseI TTAA 1 cut(s) 32
MspI CCGG 1 cut(s) 279
MspR9I CCNGG 2 cut(s) 280, 300
MvaI CCWGG 1 cut(s) 300
NciI CCSGG 1 cut(s) 280
NdeII GATC 2 cut(s) 214, 256
NlaIV GGNNCC 2 cut(s) 91, 296
PkrI GCNGC 2 cut(s) 139, 142
PleI GAGTC 1 cut(s) 157
PpsI GAGTC 1 cut(s) 157
Psp124BI GAGCTC 1 cut(s) 287
Psp6I CCWGG 1 cut(s) 298
PspGI CCWGG 1 cut(s) 298
PspN4I GGNNCC 2 cut(s) 91, 296
PspPI GGNCC 2 cut(s) 251, 294
PsuI RGATCY 2 cut(s) 214, 256
RsaI GTAC 1 cut(s) 91
RsaNI GTAC 1 cut(s) 90
SacI GAGCTC 1 cut(s) 287
SaqAI TTAA 1 cut(s) 32
SatI GCNGC 2 cut(s) 138, 141
Sau3AI GATC 2 cut(s) 214, 256
Sau96I GGNCC 2 cut(s) 251, 294
SchI GAGTC 1 cut(s) 158
ScrFI CCNGG 2 cut(s) 280, 300
SduI GDGCHC 1 cut(s) 287
SetI ASST 5 cut(s) 39, 131, 198, 287, 310
SinI GGWCC 1 cut(s) 251
SmlI CTYRAG 1 cut(s) 102
SmoI CTYRAG 1 cut(s) 102
SsiI CCGC 2 cut(s) 137, 170
SspMI CTAG 2 cut(s) 6, 95
SstI GAGCTC 1 cut(s) 287
StyD4I CCNGG 2 cut(s) 278, 298
TauI GCSGC 1 cut(s) 140
Tru1I TTAA 1 cut(s) 32
Tru9I TTAA 1 cut(s) 32
TscAI CASTG 1 cut(s) 63
TseI GCWGC 1 cut(s) 140
TspDTI ATGAA 1 cut(s) 191
TspRI CASTG 1 cut(s) 63
VpaK11BI GGWCC 1 cut(s) 251
XspI CTAG 2 cut(s) 6, 95
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.