Rh4DG426800

CLAVATA3 ESR (CLE)-related protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr4D
OG0012006
Physical Location & Seq
Reverse (-)
63257617 .. 63260347
2731 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh4DG426800.1

Sequence Viewer

Length: 348 bp
ATGGGTAGCGGTGGTAGTGATGATCATGTTTCTTCTAGCTTTGTTAAGGTACTGTTGGGGACGGTTGCAGTGGTGGGCTTTATCTTGGTTTTGTTGGTTGCCACGCTAGACTTGACTACGACTGATCAAGGTCAAGGAGGAGGCATAGCGTCGACAAAAACTGCAGCTACGACCTCATCAGCAACATCAGATCAGTTTGCAGGAAATAGTATGAAGCATGCAGATCAGGAACTCGTTCATCCGGAGCTGGATCTCAACTATATGAGCAAAAGAAGAGTTCCTAATGGGCCAGATCCTATTCACAACAGGAGAACTGGCAACTCCGGGCGACCCCCAGGCCAAGCTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

115

Amino Acids

11.89

Weight (kDa)

6.38

Isoelectric Point (pI)

42.59

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0012006)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G69970 AT1G69970
fragaria_vesca FvH4_4g35400
malus_domestica MD13G1083500.v1.1 MD16G1082900.v1.1
prunus_persica Prupe.1G263100_v2.0.a1
pyrus_communis pycom13g07220 pycom16g07180
rosa_chinensis RchiOBHm_Chr4g0445011
rosa_laevigata RLG00000005777
rosa_multiflora Rmu_sc0003784.1_g000023
rosa_roxburghii Rroxscaffold_5G00385540
rosa_rugosa Rorug04G0357600 Rorug04G0357600
rosa_samantha Rh4AG419200 Rh4BG430900 Rh4CG445200 Rh4DG426800
rosa_wichuraiana Rw4G035890

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 152
AccIII TCCGGA 1 cut(s) 241
AciI CCGC 1 cut(s) 9
AclWI GGATC 2 cut(s) 258, 287
AfaI GTAC 1 cut(s) 51
AjnI CCWGG 1 cut(s) 334
AluBI AGCT 4 cut(s) 39, 167, 247, 344
AluI AGCT 4 cut(s) 39, 167, 247, 344
AlwI GGATC 2 cut(s) 258, 287
Aor13HI TCCGGA 1 cut(s) 241
AoxI GGCC 2 cut(s) 287, 337
ApeKI GCWGC 1 cut(s) 164
Asp700I GAANNNNTTC 1 cut(s) 234
AspS9I GGNCC 1 cut(s) 287
AsuC2I CCSGG 1 cut(s) 325
BbvI GCAGC 1 cut(s) 176
BciT130I CCWGG 1 cut(s) 336
BclI TGATCA 2 cut(s) 22, 124
BcnI CCSGG 1 cut(s) 325
BfaI CTAG 2 cut(s) 36, 107
BfmI CTRYAG 1 cut(s) 162
BisI GCNGC 1 cut(s) 165
BlsI GCNGC 1 cut(s) 166
Bme1390I CCNGG 2 cut(s) 325, 336
BmgT120I GGNCC 1 cut(s) 287
BmrFI CCNGG 2 cut(s) 325, 336
BpuMI CCSGG 1 cut(s) 325
BsaJI CCNNGG 1 cut(s) 334
BsaWI WCCGGW 1 cut(s) 241
Bse1I ACTGG 1 cut(s) 319
BseAI TCCGGA 1 cut(s) 241
BseBI CCWGG 1 cut(s) 336
BseDI CCNNGG 1 cut(s) 334
BseGI GGATG 1 cut(s) 238
BseNI ACTGG 1 cut(s) 319
BseRI GAGGAG 1 cut(s) 153
BseXI GCAGC 1 cut(s) 176
BshFI GGCC 2 cut(s) 289, 339
BsiSI CCGG 2 cut(s) 242, 324
BslFI GGGAC 1 cut(s) 73
BsmFI GGGAC 1 cut(s) 73
BsnI GGCC 2 cut(s) 289, 339
Bsp13I TCCGGA 1 cut(s) 241
Bsp143I GATC 6 cut(s) 22, 124, 190, 223, 250, 292
BspACI CCGC 1 cut(s) 9
BspANI GGCC 2 cut(s) 289, 339
BspEI TCCGGA 1 cut(s) 241
BspMAI CTGCAG 1 cut(s) 166
BspPI GGATC 2 cut(s) 258, 287
BsrI ACTGG 1 cut(s) 319
BssECI CCNNGG 1 cut(s) 334
BssMI GATC 6 cut(s) 22, 124, 190, 223, 250, 292
Bst2UI CCWGG 1 cut(s) 336
Bst4CI ACNGT 2 cut(s) 54, 64
Bst6I CTCTTC 1 cut(s) 268
BstC8I GCNNGC 1 cut(s) 219
BstDEI CTNAG 1 cut(s) 345
BstF5I GGATG 1 cut(s) 238
BstKTI GATC 6 cut(s) 25, 127, 193, 226, 253, 295
BstMBI GATC 6 cut(s) 22, 124, 190, 223, 250, 292
BstNI CCWGG 1 cut(s) 336
BstNSI RCATGY 1 cut(s) 221
BstSCI CCNGG 2 cut(s) 323, 334
BstSFI CTRYAG 1 cut(s) 162
BstV1I GCAGC 1 cut(s) 176
BstX2I RGATCY 2 cut(s) 250, 292
BstYI RGATCY 2 cut(s) 250, 292
BsuRI GGCC 2 cut(s) 289, 339
BtsCI GGATG 1 cut(s) 238
BtsI GCAGTG 1 cut(s) 75
BtsIMutI CAGTG 1 cut(s) 75
Cac8I GCNNGC 1 cut(s) 219
Cfr13I GGNCC 1 cut(s) 287
CseI GACGC 1 cut(s) 138
Csp6I GTAC 1 cut(s) 50
CviAII CATG 2 cut(s) 26, 218
CviJI RGCY 7 cut(s) 39, 78, 167, 247, 289, 339, 344
CviKI_1 RGCY 7 cut(s) 39, 78, 167, 247, 289, 339, 344
CviQI GTAC 1 cut(s) 50
DdeI CTNAG 1 cut(s) 345
DpnI GATC 6 cut(s) 24, 126, 192, 225, 252, 294
DpnII GATC 6 cut(s) 22, 124, 190, 223, 250, 292
Eam1104I CTCTTC 1 cut(s) 268
EarI CTCTTC 1 cut(s) 268
EcoRII CCWGG 1 cut(s) 334
FaeI CATG 2 cut(s) 29, 221
FaiI YATR 6 cut(s) 27, 146, 212, 219, 261, 263
FaqI GGGAC 1 cut(s) 73
FatI CATG 2 cut(s) 25, 217
FbaI TGATCA 2 cut(s) 22, 124
FblI GTMKAC 1 cut(s) 152
Fnu4HI GCNGC 1 cut(s) 165
FokI GGATG 1 cut(s) 225
Fsp4HI GCNGC 1 cut(s) 165
FspBI CTAG 2 cut(s) 36, 107
GluI GCNGC 1 cut(s) 165
HaeIII GGCC 2 cut(s) 289, 339
HapII CCGG 2 cut(s) 242, 324
HgaI GACGC 1 cut(s) 138
Hin1II CATG 2 cut(s) 29, 221
HincII GTYRAC 1 cut(s) 153
HindII GTYRAC 1 cut(s) 153
HindIII AAGCTT 1 cut(s) 342
HpaII CCGG 2 cut(s) 242, 324
Hpy166II GTNNAC 1 cut(s) 153
Hpy188I TCNGA 1 cut(s) 190
Hpy188III TCNNGA 2 cut(s) 227, 242
Hpy8I GTNNAC 1 cut(s) 153
Hpy99I CGWCG 1 cut(s) 154
HpyCH4III ACNGT 2 cut(s) 54, 64
HpyCH4V TGCA 4 cut(s) 68, 164, 200, 221
HpyF3I CTNAG 1 cut(s) 345
Hsp92II CATG 2 cut(s) 29, 221
Kpn2I TCCGGA 1 cut(s) 241
Ksp22I TGATCA 2 cut(s) 22, 124
Kzo9I GATC 6 cut(s) 22, 124, 190, 223, 250, 292
LmnI GCTCC 1 cut(s) 244
LpnPI CCDG 9 cut(s) 186, 212, 233, 255, 292, 300, 303, 321, 337
Lsp1109I GCAGC 1 cut(s) 176
MaeI CTAG 2 cut(s) 36, 107
MalI GATC 6 cut(s) 24, 126, 192, 225, 252, 294
MboI GATC 6 cut(s) 22, 124, 190, 223, 250, 292
MboII GAAGA 2 cut(s) 24, 285
MflI RGATCY 2 cut(s) 250, 292
MnlI CCTC 3 cut(s) 131, 134, 184
MroI TCCGGA 1 cut(s) 241
MroXI GAANNNNTTC 1 cut(s) 234
MseI TTAA 1 cut(s) 45
MspI CCGG 2 cut(s) 242, 324
MspR9I CCNGG 2 cut(s) 325, 336
MvaI CCWGG 1 cut(s) 336
NciI CCSGG 1 cut(s) 325
NdeII GATC 6 cut(s) 22, 124, 190, 223, 250, 292
NlaIII CATG 2 cut(s) 29, 221
NspI RCATGY 1 cut(s) 221
PaeI GCATGC 1 cut(s) 221
PdmI GAANNNNTTC 1 cut(s) 234
PkrI GCNGC 1 cut(s) 166
Psp6I CCWGG 1 cut(s) 334
PspGI CCWGG 1 cut(s) 334
PspPI GGNCC 1 cut(s) 287
PstI CTGCAG 1 cut(s) 166
PsuI RGATCY 2 cut(s) 250, 292
RsaI GTAC 1 cut(s) 51
RsaNI GTAC 1 cut(s) 50
SalI GTCGAC 1 cut(s) 151
SaqAI TTAA 1 cut(s) 45
SatI GCNGC 1 cut(s) 165
Sau3AI GATC 6 cut(s) 22, 124, 190, 223, 250, 292
Sau96I GGNCC 1 cut(s) 287
ScrFI CCNGG 2 cut(s) 325, 336
SetI ASST 7 cut(s) 41, 51, 133, 169, 176, 249, 346
SfcI CTRYAG 1 cut(s) 162
SphI GCATGC 1 cut(s) 221
SsiI CCGC 1 cut(s) 9
SspMI CTAG 2 cut(s) 36, 107
StyD4I CCNGG 2 cut(s) 323, 334
TaaI ACNGT 2 cut(s) 54, 64
TaqI TCGA 1 cut(s) 152
Tru1I TTAA 1 cut(s) 45
Tru9I TTAA 1 cut(s) 45
TscAI CASTG 1 cut(s) 75
TseI GCWGC 1 cut(s) 164
TspDTI ATGAA 2 cut(s) 227, 227
TspRI CASTG 1 cut(s) 75
XceI RCATGY 1 cut(s) 221
XmiI GTMKAC 1 cut(s) 152
XmnI GAANNNNTTC 1 cut(s) 234
XspI CTAG 2 cut(s) 36, 107
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.