Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000005

Orthogroup ID

OG0012006

Physical Location & Seq

Genomic Coordinates Reverse (-)

64590160 .. 64591872

Gene Structure 1713 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_5G00385540.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 411 bp

ATGGGTAGTGGTGGTAGTGATGATCATGTTTCTCCTAGCTTTGTTAAGGTACTGTTGGGGACGGTTGCAGTGGTGGGCTTTATCTTGGTTTTGTTGGTTGCTACGCTAGACTTGACTGCTACTGATCAAGGTCAAGGCGGAGGCATAGGGTCGACAAAAACTGCAGCTACGACCTCATCAGCAACATCAGATCAGTTTGCAGGAAATAGTATGAAGCATGCAGATCAGGAACTTGTTCATCCGGAGCTGGATCTCAACTATATGAGCAAAAGAAGAGTTCCTAATGGGCCAGATCCTATTCACAACAGGAGAGCTGAGAATAAGAATCGAGCTGCAATTGAAGAGAACTGGCAACTCCGGGCGACCCCCAGGCCAAGCTTAGCCACTGAAGCAGTAATCTACAAAGTTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

136

Amino Acids

14.45

Weight (kDa)

6.4

Isoelectric Point (pI)

48.88

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0012006)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G69970 AT1G69970
fragaria_vesca	FvH4_4g35400
malus_domestica	MD13G1083500.v1.1 MD16G1082900.v1.1
prunus_persica	Prupe.1G263100_v2.0.a1
pyrus_communis	pycom13g07220 pycom16g07180
rosa_chinensis	RchiOBHm_Chr4g0445011
rosa_laevigata	RLG00000005777
rosa_multiflora	Rmu_sc0003784.1_g000023
rosa_roxburghii	Rroxscaffold_5G00385540
rosa_rugosa	Rorug04G0357600 Rorug04G0357600
rosa_samantha	Rh4AG419200 Rh4BG430900 Rh4CG445200 Rh4DG426800
rosa_wichuraiana	Rw4G035890

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	152
AccIII	TCCGGA	1 cut(s)	241
AciI	CCGC	1 cut(s)	138
AclWI	GGATC	2 cut(s)	258, 287
AcuI	CTGAAG	1 cut(s)	408
AfaI	GTAC	1 cut(s)	51
AgsI	TTSAA	1 cut(s)	341
AjnI	CCWGG	1 cut(s)	368
AluBI	AGCT	6 cut(s)	39, 167, 247, 314, 332, 378
AluI	AGCT	6 cut(s)	39, 167, 247, 314, 332, 378
AlwI	GGATC	2 cut(s)	258, 287
Aor13HI	TCCGGA	1 cut(s)	241
AoxI	GGCC	2 cut(s)	287, 371
ApeKI	GCWGC	2 cut(s)	164, 332
Asp700I	GAANNNNTTC	1 cut(s)	234
AspS9I	GGNCC	1 cut(s)	287
AsuC2I	CCSGG	1 cut(s)	359
BbvI	GCAGC	2 cut(s)	176, 319
BciT130I	CCWGG	1 cut(s)	370
BclI	TGATCA	2 cut(s)	22, 124
BcnI	CCSGG	1 cut(s)	359
BfaI	CTAG	2 cut(s)	36, 107
BfmI	CTRYAG	1 cut(s)	162
BisI	GCNGC	2 cut(s)	165, 333
BlpI	GCTNAGC	1 cut(s)	379
BlsI	GCNGC	2 cut(s)	166, 334
Bme1390I	CCNGG	2 cut(s)	359, 370
BmgT120I	GGNCC	1 cut(s)	287
BmrFI	CCNGG	2 cut(s)	359, 370
Bpu1102I	GCTNAGC	1 cut(s)	379
BpuMI	CCSGG	1 cut(s)	359
BsaJI	CCNNGG	1 cut(s)	368
BsaWI	WCCGGW	1 cut(s)	241
Bse1I	ACTGG	1 cut(s)	353
BseAI	TCCGGA	1 cut(s)	241
BseBI	CCWGG	1 cut(s)	370
BseDI	CCNNGG	1 cut(s)	368
BseGI	GGATG	1 cut(s)	238
BseMII	CTCAG	1 cut(s)	306
BseNI	ACTGG	1 cut(s)	353
BseXI	GCAGC	2 cut(s)	176, 319
BshFI	GGCC	2 cut(s)	289, 373
BsiSI	CCGG	2 cut(s)	242, 358
BslFI	GGGAC	1 cut(s)	73
BsmFI	GGGAC	1 cut(s)	73
BsnI	GGCC	2 cut(s)	289, 373
Bsp13I	TCCGGA	1 cut(s)	241
Bsp143I	GATC	6 cut(s)	22, 124, 190, 223, 250, 292
Bsp1720I	GCTNAGC	1 cut(s)	379
BspACI	CCGC	1 cut(s)	138
BspANI	GGCC	2 cut(s)	289, 373
BspCNI	CTCAG	1 cut(s)	307
BspEI	TCCGGA	1 cut(s)	241
BspMAI	CTGCAG	1 cut(s)	166
BspPI	GGATC	2 cut(s)	258, 287
BsrI	ACTGG	1 cut(s)	353
BssECI	CCNNGG	1 cut(s)	368
BssMI	GATC	6 cut(s)	22, 124, 190, 223, 250, 292
Bst2UI	CCWGG	1 cut(s)	370
Bst4CI	ACNGT	2 cut(s)	54, 64
Bst6I	CTCTTC	2 cut(s)	268, 336
BstC8I	GCNNGC	1 cut(s)	219
BstDEI	CTNAG	2 cut(s)	315, 379
BstF5I	GGATG	1 cut(s)	238
BstKTI	GATC	6 cut(s)	25, 127, 193, 226, 253, 295
BstMBI	GATC	6 cut(s)	22, 124, 190, 223, 250, 292
BstMWI	GCNNNNNNNGC	1 cut(s)	389
BstNI	CCWGG	1 cut(s)	370
BstNSI	RCATGY	1 cut(s)	221
BstSCI	CCNGG	2 cut(s)	357, 368
BstSFI	CTRYAG	1 cut(s)	162
BstV1I	GCAGC	2 cut(s)	176, 319
BstX2I	RGATCY	2 cut(s)	250, 292
BstYI	RGATCY	2 cut(s)	250, 292
BsuRI	GGCC	2 cut(s)	289, 373
BtsCI	GGATG	1 cut(s)	238
BtsI	GCAGTG	1 cut(s)	75
BtsIMutI	CAGTG	2 cut(s)	75, 384
Cac8I	GCNNGC	1 cut(s)	219
Cfr13I	GGNCC	1 cut(s)	287
Csp6I	GTAC	1 cut(s)	50
CviAII	CATG	2 cut(s)	26, 218
CviQI	GTAC	1 cut(s)	50
DdeI	CTNAG	2 cut(s)	315, 379
DpnI	GATC	6 cut(s)	24, 126, 192, 225, 252, 294
DpnII	GATC	6 cut(s)	22, 124, 190, 223, 250, 292
Eam1104I	CTCTTC	2 cut(s)	268, 336
EarI	CTCTTC	2 cut(s)	268, 336
EciI	GGCGGA	1 cut(s)	153
Eco57I	CTGAAG	1 cut(s)	408
EcoRII	CCWGG	1 cut(s)	368
FaeI	CATG	2 cut(s)	29, 221
FaiI	YATR	6 cut(s)	27, 146, 212, 219, 261, 263
FaqI	GGGAC	1 cut(s)	73
FatI	CATG	2 cut(s)	25, 217
FbaI	TGATCA	2 cut(s)	22, 124
FblI	GTMKAC	1 cut(s)	152
Fnu4HI	GCNGC	2 cut(s)	165, 333
FokI	GGATG	1 cut(s)	225
Fsp4HI	GCNGC	2 cut(s)	165, 333
FspBI	CTAG	2 cut(s)	36, 107
GluI	GCNGC	2 cut(s)	165, 333
HaeIII	GGCC	2 cut(s)	289, 373
HapII	CCGG	2 cut(s)	242, 358
Hin1II	CATG	2 cut(s)	29, 221
HincII	GTYRAC	1 cut(s)	153
HindII	GTYRAC	1 cut(s)	153
HindIII	AAGCTT	1 cut(s)	376
HinfI	GANTC	1 cut(s)	325
HpaII	CCGG	2 cut(s)	242, 358
Hpy166II	GTNNAC	1 cut(s)	153
Hpy188I	TCNGA	1 cut(s)	190
Hpy188III	TCNNGA	2 cut(s)	227, 242
Hpy8I	GTNNAC	1 cut(s)	153
HpyCH4III	ACNGT	2 cut(s)	54, 64
HpyCH4V	TGCA	5 cut(s)	68, 164, 200, 221, 335
HpyF10VI	GCNNNNNNNGC	1 cut(s)	389
HpyF3I	CTNAG	2 cut(s)	315, 379
Hsp92II	CATG	2 cut(s)	29, 221
Kpn2I	TCCGGA	1 cut(s)	241
Ksp22I	TGATCA	2 cut(s)	22, 124
Kzo9I	GATC	6 cut(s)	22, 124, 190, 223, 250, 292
LmnI	GCTCC	1 cut(s)	244
Lsp1109I	GCAGC	2 cut(s)	176, 319
MaeI	CTAG	2 cut(s)	36, 107
MalI	GATC	6 cut(s)	24, 126, 192, 225, 252, 294
MboI	GATC	6 cut(s)	22, 124, 190, 223, 250, 292
MboII	GAAGA	2 cut(s)	285, 353
MfeI	CAATTG	1 cut(s)	336
MflI	RGATCY	2 cut(s)	250, 292
MluCI	AATT	1 cut(s)	336
MnlI	CCTC	2 cut(s)	134, 184
MroI	TCCGGA	1 cut(s)	241
MroXI	GAANNNNTTC	1 cut(s)	234
MseI	TTAA	1 cut(s)	45
MspI	CCGG	2 cut(s)	242, 358
MspR9I	CCNGG	2 cut(s)	359, 370
MunI	CAATTG	1 cut(s)	336
MvaI	CCWGG	1 cut(s)	370
MwoI	GCNNNNNNNGC	1 cut(s)	389
NciI	CCSGG	1 cut(s)	359
NdeII	GATC	6 cut(s)	22, 124, 190, 223, 250, 292
NlaIII	CATG	2 cut(s)	29, 221
NspI	RCATGY	1 cut(s)	221
PaeI	GCATGC	1 cut(s)	221
PdmI	GAANNNNTTC	1 cut(s)	234
PfeI	GAWTC	1 cut(s)	325
PkrI	GCNGC	2 cut(s)	166, 334
Psp6I	CCWGG	1 cut(s)	368
PspGI	CCWGG	1 cut(s)	368
PspPI	GGNCC	1 cut(s)	287
PstI	CTGCAG	1 cut(s)	166
PsuI	RGATCY	2 cut(s)	250, 292
RsaI	GTAC	1 cut(s)	51
RsaNI	GTAC	1 cut(s)	50
SalI	GTCGAC	1 cut(s)	151
SaqAI	TTAA	1 cut(s)	45
SatI	GCNGC	2 cut(s)	165, 333
Sau3AI	GATC	6 cut(s)	22, 124, 190, 223, 250, 292
Sau96I	GGNCC	1 cut(s)	287
ScrFI	CCNGG	2 cut(s)	359, 370
SetI	ASST	9 cut(s)	41, 51, 133, 169, 176, 249, 316, 334, 380
SfcI	CTRYAG	1 cut(s)	162
SphI	GCATGC	1 cut(s)	221
Sse9I	AATT	1 cut(s)	336
SsiI	CCGC	1 cut(s)	138
SspMI	CTAG	2 cut(s)	36, 107
StyD4I	CCNGG	2 cut(s)	357, 368
TaaI	ACNGT	2 cut(s)	54, 64
TaqI	TCGA	2 cut(s)	152, 328
TasI	AATT	1 cut(s)	336
TfiI	GAWTC	1 cut(s)	325
Tru1I	TTAA	1 cut(s)	45
Tru9I	TTAA	1 cut(s)	45
TscAI	CASTG	2 cut(s)	75, 391
TseI	GCWGC	2 cut(s)	164, 332
TspDTI	ATGAA	2 cut(s)	227, 227
TspRI	CASTG	2 cut(s)	75, 391
XceI	RCATGY	1 cut(s)	221
XmiI	GTMKAC	1 cut(s)	152
XmnI	GAANNNNTTC	1 cut(s)	234
XspI	CTAG	2 cut(s)	36, 107

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.