MD16G1082900.v1.1

CLAVATA3 ESR (CLE)-related protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr16
OG0012006
Physical Location & Seq
Forward (+)
5804146 .. 5806158
2013 bp
Loading structure...
UTR
Exon/CDS
Intron
MD16G1082900.v1.1.491

Sequence Viewer

Length: 270 bp
ATGGGTGGTGGTGTTTCTTGCCTTAAGTTGTTCTTGCAAACGCTTACGGTAGTAGGGTTTATCTGTTTCTTGTTGGTCGGAACACTAGAGACTCAAGGGGGTACAAGTATAGCAGCCTCAAAGCATGCTGATGCGGTTGGAAGAGAGAAGCTTGTTCATCCAGACTTGAATCTCAACTATATGGTGAGCAAAAGAAGAGTTCCCAAAGGACCAGATCCTATTCACAACAGGAGAGCCGGGAGCTCAGGACGGCCCCCCGGTCAAGCTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

90

Amino Acids

9.4

Weight (kDa)

10.03

Isoelectric Point (pI)

45.31

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0012006)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G69970 AT1G69970
fragaria_vesca FvH4_4g35400
malus_domestica MD13G1083500.v1.1 MD16G1082900.v1.1
prunus_persica Prupe.1G263100_v2.0.a1
pyrus_communis pycom13g07220 pycom16g07180
rosa_chinensis RchiOBHm_Chr4g0445011
rosa_laevigata RLG00000005777
rosa_multiflora Rmu_sc0003784.1_g000023
rosa_roxburghii Rroxscaffold_5G00385540
rosa_rugosa Rorug04G0357600 Rorug04G0357600
rosa_samantha Rh4AG419200 Rh4BG430900 Rh4CG445200 Rh4DG426800
rosa_wichuraiana Rw4G035890

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 134
AclWI GGATC 1 cut(s) 209
AfaI GTAC 1 cut(s) 103
AflII CTTAAG 1 cut(s) 23
AgsI TTSAA 1 cut(s) 169
AluBI AGCT 3 cut(s) 151, 243, 266
AluI AGCT 3 cut(s) 151, 243, 266
Alw21I GWGCWC 1 cut(s) 245
Alw26I GTCTC 1 cut(s) 83
AlwI GGATC 1 cut(s) 209
AoxI GGCC 1 cut(s) 251
ApeKI GCWGC 1 cut(s) 113
AspS9I GGNCC 2 cut(s) 209, 252
AsuC2I CCSGG 2 cut(s) 238, 258
AsuHPI GGTGA 1 cut(s) 196
AvaII GGWCC 1 cut(s) 209
BanII GRGCYC 1 cut(s) 245
Bbv12I GWGCWC 1 cut(s) 245
BbvI GCAGC 1 cut(s) 125
BceAI ACGGC 1 cut(s) 266
BcnI CCSGG 2 cut(s) 238, 258
BcoDI GTCTC 1 cut(s) 83
BfaI CTAG 1 cut(s) 86
BfrI CTTAAG 1 cut(s) 23
BisI GCNGC 1 cut(s) 114
BlsI GCNGC 1 cut(s) 115
Bme1390I CCNGG 2 cut(s) 238, 258
Bme18I GGWCC 1 cut(s) 209
BmgT120I GGNCC 2 cut(s) 209, 252
BmiI GGNNCC 1 cut(s) 254
BmrFI CCNGG 2 cut(s) 238, 258
BmsI GCATC 1 cut(s) 121
Bpu10I CCTNAGC 1 cut(s) 244
BpuEI CTTGAG 1 cut(s) 78
BpuMI CCSGG 2 cut(s) 238, 258
BsaJI CCNNGG 1 cut(s) 256
BseDI CCNNGG 1 cut(s) 256
BseGI GGATG 1 cut(s) 157
BseMII CTCAG 1 cut(s) 258
BseXI GCAGC 1 cut(s) 125
BshFI GGCC 1 cut(s) 253
BsiHKAI GWGCWC 1 cut(s) 245
BsiSI CCGG 2 cut(s) 237, 258
BsmAI GTCTC 1 cut(s) 83
BsnI GGCC 1 cut(s) 253
Bsp1286I GDGCHC 1 cut(s) 245
Bsp143I GATC 1 cut(s) 214
BspACI CCGC 1 cut(s) 134
BspANI GGCC 1 cut(s) 253
BspCNI CTCAG 1 cut(s) 257
BspLI GGNNCC 1 cut(s) 254
BspPI GGATC 1 cut(s) 209
BspTI CTTAAG 1 cut(s) 23
BssECI CCNNGG 1 cut(s) 256
BssMI GATC 1 cut(s) 214
Bst4CI ACNGT 1 cut(s) 49
Bst6I CTCTTC 2 cut(s) 136, 190
BstAFI CTTAAG 1 cut(s) 23
BstC8I GCNNGC 1 cut(s) 126
BstDEI CTNAG 2 cut(s) 244, 267
BstF5I GGATG 1 cut(s) 157
BstKTI GATC 1 cut(s) 217
BstMAI GTCTC 1 cut(s) 83
BstMBI GATC 1 cut(s) 214
BstNSI RCATGY 1 cut(s) 128
BstSCI CCNGG 2 cut(s) 236, 256
BstV1I GCAGC 1 cut(s) 125
BstX2I RGATCY 1 cut(s) 214
BstYI RGATCY 1 cut(s) 214
BsuRI GGCC 1 cut(s) 253
BtsCI GGATG 1 cut(s) 157
Cac8I GCNNGC 1 cut(s) 126
Cfr13I GGNCC 2 cut(s) 209, 252
Csp6I GTAC 1 cut(s) 102
CviAII CATG 1 cut(s) 125
CviJI RGCY 6 cut(s) 116, 151, 236, 243, 253, 266
CviKI_1 RGCY 6 cut(s) 116, 151, 236, 243, 253, 266
CviQI GTAC 1 cut(s) 102
DdeI CTNAG 2 cut(s) 244, 267
DpnI GATC 1 cut(s) 216
DpnII GATC 1 cut(s) 214
Eam1104I CTCTTC 2 cut(s) 136, 190
EarI CTCTTC 2 cut(s) 136, 190
Ecl136II GAGCTC 1 cut(s) 243
Eco24I GRGCYC 1 cut(s) 245
Eco47I GGWCC 1 cut(s) 209
Eco53kI GAGCTC 1 cut(s) 243
EcoICRI GAGCTC 1 cut(s) 243
EcoT38I GRGCYC 1 cut(s) 245
FaeI CATG 1 cut(s) 128
FaiI YATR 4 cut(s) 110, 126, 180, 182
FalI AAGNNNNNCTT 2 cut(s) 17, 49
FatI CATG 1 cut(s) 124
Fnu4HI GCNGC 1 cut(s) 114
FokI GGATG 1 cut(s) 144
FriOI GRGCYC 1 cut(s) 245
Fsp4HI GCNGC 1 cut(s) 114
FspBI CTAG 1 cut(s) 86
GluI GCNGC 1 cut(s) 114
HaeIII GGCC 1 cut(s) 253
HapII CCGG 2 cut(s) 237, 258
Hin1II CATG 1 cut(s) 128
HindIII AAGCTT 2 cut(s) 149, 264
HinfI GANTC 2 cut(s) 91, 169
HpaII CCGG 2 cut(s) 237, 258
HphI GGTGA 1 cut(s) 196
Hpy188I TCNGA 1 cut(s) 80
Hpy188III TCNNGA 2 cut(s) 161, 246
HpyCH4III ACNGT 1 cut(s) 49
HpyCH4V TGCA 1 cut(s) 37
HpyF3I CTNAG 2 cut(s) 244, 267
Hsp92II CATG 1 cut(s) 128
Kzo9I GATC 1 cut(s) 214
LmnI GCTCC 1 cut(s) 240
LpnPI CCDG 5 cut(s) 174, 214, 225, 231, 250
Lsp1109I GCAGC 1 cut(s) 125
LweI GCATC 1 cut(s) 121
MaeI CTAG 1 cut(s) 86
MalI GATC 1 cut(s) 216
MboI GATC 1 cut(s) 214
MboII GAAGA 2 cut(s) 153, 207
MflI RGATCY 1 cut(s) 214
MhlI GDGCHC 1 cut(s) 245
MlyI GAGTC 1 cut(s) 85
MmeI TCCRAC 2 cut(s) 58, 118
MnlI CCTC 1 cut(s) 127
MseI TTAA 1 cut(s) 24
MslI CAYNNNNRTG 1 cut(s) 129
MspCI CTTAAG 1 cut(s) 23
MspI CCGG 2 cut(s) 237, 258
MspR9I CCNGG 2 cut(s) 238, 258
NciI CCSGG 2 cut(s) 238, 258
NdeII GATC 1 cut(s) 214
NlaIII CATG 1 cut(s) 128
NlaIV GGNNCC 1 cut(s) 254
NspI RCATGY 1 cut(s) 128
PaeI GCATGC 1 cut(s) 128
PfeI GAWTC 1 cut(s) 169
PkrI GCNGC 1 cut(s) 115
PleI GAGTC 1 cut(s) 85
PpsI GAGTC 1 cut(s) 85
Psp124BI GAGCTC 1 cut(s) 245
PspN4I GGNNCC 1 cut(s) 254
PspPI GGNCC 2 cut(s) 209, 252
PsuI RGATCY 1 cut(s) 214
RsaI GTAC 1 cut(s) 103
RsaNI GTAC 1 cut(s) 102
RseI CAYNNNNRTG 1 cut(s) 129
SacI GAGCTC 1 cut(s) 245
SaqAI TTAA 1 cut(s) 24
SatI GCNGC 1 cut(s) 114
Sau3AI GATC 1 cut(s) 214
Sau96I GGNCC 2 cut(s) 209, 252
SchI GAGTC 1 cut(s) 85
ScrFI CCNGG 2 cut(s) 238, 258
SduI GDGCHC 1 cut(s) 245
SetI ASST 3 cut(s) 153, 245, 268
SfaNI GCATC 1 cut(s) 121
SinI GGWCC 1 cut(s) 209
SmiMI CAYNNNNRTG 1 cut(s) 129
SmlI CTYRAG 2 cut(s) 23, 93
SmoI CTYRAG 2 cut(s) 23, 93
SphI GCATGC 1 cut(s) 128
SsiI CCGC 1 cut(s) 134
SspMI CTAG 1 cut(s) 86
SstI GAGCTC 1 cut(s) 245
StyD4I CCNGG 2 cut(s) 236, 256
TaaI ACNGT 1 cut(s) 49
TfiI GAWTC 1 cut(s) 169
Tru1I TTAA 1 cut(s) 24
Tru9I TTAA 1 cut(s) 24
TseI GCWGC 1 cut(s) 113
TspDTI ATGAA 1 cut(s) 146
Vha464I CTTAAG 1 cut(s) 23
VpaK11BI GGWCC 1 cut(s) 209
XceI RCATGY 1 cut(s) 128
XspI CTAG 1 cut(s) 86
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.