FvH4_4g36631

Protein of unknown function (DUF632)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb4
OG0018839
Physical Location & Seq
Reverse (-)
33483819 .. 33484244
426 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_4g36631.t1

Sequence Viewer

Length: 426 bp
ATGGTTTCCGATGCCAATCACCGCAATGCTGCTAAGAAACTTAAAGCACAACTTGAAGAATGGCTTGCGTGCTTCACTAATTATGTTTCTTCGCACAAGGCTTACATTAAGGCTCTTCATGTTTGTGCAAGGCGTCCACTCCTGGCGTTTTGTGAAGAAAACAACAACAACGCCCTATCACTGCTGGAACTGGAAAAGTGGTCAAGTTGTTTGGATAAGCTGTCTGCTGATGTGACTGTGACTAAAGCCATCGGTGACTTGGCCACAAAAGTTGGAGAACTATTGGAGTTACAAAATAAGGAATATAAACACAAGAGGCAGGTTGAACTCCAAGGGGAGCATTATAAAACTGAGAAGTCCAGTAAGACCAAGGACAAGTCTTATAAGTTGATGCAAAGGATAAAAGAAAGAGGAAGTGGAATATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF630 DUF632

Protein Analysis

142

Amino Acids

16.1

Weight (kDa)

9.23

Isoelectric Point (pI)

36.61

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF632 PF04782 5 - 92 1.5e-10 Protein of unknown function (DUF632)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0018839)

Species Orthologous Gene IDs
fragaria_vesca FvH4_4g36400 FvH4_4g36610 FvH4_4g36631
prunus_persica Prupe.5G138800_v2.0.a1
rosa_laevigata RLG00000005688
rosa_roxburghii Rroxscaffold_5G00386540
rosa_samantha Rh4AG429900 Rh4BG439300 Rh4CG456600

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 2 cut(s) 345, 384
Acc36I ACCTGC 1 cut(s) 310
AciI CCGC 1 cut(s) 22
AcoI YGGCCR 1 cut(s) 261
AcyI GRCGYC 1 cut(s) 133
AgsI TTSAA 2 cut(s) 56, 326
AjnI CCWGG 1 cut(s) 141
AluBI AGCT 1 cut(s) 220
AluI AGCT 1 cut(s) 220
AoxI GGCC 1 cut(s) 261
ApeKI GCWGC 1 cut(s) 29
AsuHPI GGTGA 2 cut(s) 11, 266
BalI TGGCCA 1 cut(s) 263
BbvI GCAGC 1 cut(s) 16
BccI CCATC 1 cut(s) 257
BciT130I CCWGG 1 cut(s) 143
BfuAI ACCTGC 1 cut(s) 310
BisI GCNGC 1 cut(s) 30
BlsI GCNGC 1 cut(s) 31
Bme1390I CCNGG 1 cut(s) 143
BmrFI CCNGG 1 cut(s) 143
BmsI GCATC 1 cut(s) 381
BsaBI GATNNNNATC 1 cut(s) 15
BsaHI GRCGYC 1 cut(s) 133
BsaJI CCNNGG 2 cut(s) 331, 369
Bse1I ACTGG 2 cut(s) 195, 360
Bse3DI GCAATG 1 cut(s) 31
Bse8I GATNNNNATC 1 cut(s) 15
BseBI CCWGG 1 cut(s) 143
BseDI CCNNGG 2 cut(s) 331, 369
BseJI GATNNNNATC 1 cut(s) 15
BseMI GCAATG 1 cut(s) 31
BseMII CTCAG 1 cut(s) 342
BseNI ACTGG 2 cut(s) 195, 360
BseXI GCAGC 1 cut(s) 16
BshFI GGCC 1 cut(s) 263
BsnI GGCC 1 cut(s) 263
BspACI CCGC 1 cut(s) 22
BspANI GGCC 1 cut(s) 263
BspCNI CTCAG 1 cut(s) 343
BspMI ACCTGC 1 cut(s) 310
BspQI GCTCTTC 1 cut(s) 120
BsrDI GCAATG 1 cut(s) 31
BsrI ACTGG 2 cut(s) 195, 360
BssECI CCNNGG 2 cut(s) 331, 369
BssNI GRCGYC 1 cut(s) 133
BssT1I CCWWGG 2 cut(s) 331, 369
Bst2UI CCWGG 1 cut(s) 143
Bst4CI ACNGT 1 cut(s) 238
Bst6I CTCTTC 1 cut(s) 120
BstACI GRCGYC 1 cut(s) 133
BstC8I GCNNGC 2 cut(s) 66, 70
BstDEI CTNAG 2 cut(s) 33, 351
BstNI CCWGG 1 cut(s) 143
BstSCI CCNGG 1 cut(s) 141
BstV1I GCAGC 1 cut(s) 16
BsuRI GGCC 1 cut(s) 263
BtsI GCAGTG 1 cut(s) 179
BtsIMutI CAGTG 1 cut(s) 179
BveI ACCTGC 1 cut(s) 310
Cac8I GCNNGC 2 cut(s) 66, 70
CseI GACGC 1 cut(s) 122
CspCI CAANNNNNGTGG 2 cut(s) 253, 288
CviAII CATG 1 cut(s) 119
CviJI RGCY 6 cut(s) 64, 101, 113, 220, 248, 263
CviKI_1 RGCY 6 cut(s) 64, 101, 113, 220, 248, 263
DdeI CTNAG 2 cut(s) 33, 351
EaeI YGGCCR 1 cut(s) 261
Eam1104I CTCTTC 1 cut(s) 120
EarI CTCTTC 1 cut(s) 120
Eco130I CCWWGG 2 cut(s) 331, 369
EcoRII CCWGG 1 cut(s) 141
EcoT14I CCWWGG 2 cut(s) 331, 369
ErhI CCWWGG 2 cut(s) 331, 369
FaeI CATG 1 cut(s) 122
FaiI YATR 6 cut(s) 84, 120, 306, 345, 384, 424
FalI AAGNNNNNCTT 4 cut(s) 36, 68, 48, 80
FatI CATG 1 cut(s) 118
Fnu4HI GCNGC 1 cut(s) 30
Fsp4HI GCNGC 1 cut(s) 30
GluI GCNGC 1 cut(s) 30
HaeIII GGCC 1 cut(s) 263
HgaI GACGC 1 cut(s) 122
Hin1I GRCGYC 1 cut(s) 133
Hin1II CATG 1 cut(s) 122
HphI GGTGA 2 cut(s) 11, 266
Hpy166II GTNNAC 1 cut(s) 137
Hpy188I TCNGA 1 cut(s) 10
Hpy8I GTNNAC 1 cut(s) 137
HpyCH4III ACNGT 1 cut(s) 238
HpyCH4V TGCA 2 cut(s) 128, 394
HpyF3I CTNAG 2 cut(s) 33, 351
Hsp92I GRCGYC 1 cut(s) 133
Hsp92II CATG 1 cut(s) 122
LguI GCTCTTC 1 cut(s) 120
LmnI GCTCC 1 cut(s) 337
LpnPI CCDG 6 cut(s) 128, 155, 170, 176, 305, 373
Lsp1109I GCAGC 1 cut(s) 16
LweI GCATC 1 cut(s) 381
MaeIII GTNAC 4 cut(s) 232, 238, 254, 288
MboII GAAGA 4 cut(s) 68, 81, 107, 167
MlsI TGGCCA 1 cut(s) 263
MluCI AATT 1 cut(s) 79
MluNI TGGCCA 1 cut(s) 263
MmeI TCCRAC 1 cut(s) 253
MnlI CCTC 2 cut(s) 309, 404
Mox20I TGGCCA 1 cut(s) 263
MscI TGGCCA 1 cut(s) 263
MseI TTAA 2 cut(s) 42, 108
MslI CAYNNNNRTG 2 cut(s) 24, 123
Msp20I TGGCCA 1 cut(s) 263
MspR9I CCNGG 1 cut(s) 143
MvaI CCWGG 1 cut(s) 143
NlaIII CATG 1 cut(s) 122
NmuCI GTSAC 3 cut(s) 232, 238, 254
PciSI GCTCTTC 1 cut(s) 120
PkrI GCNGC 1 cut(s) 31
PsiI TTATAA 2 cut(s) 345, 384
Psp6I CCWGG 1 cut(s) 141
PspGI CCWGG 1 cut(s) 141
RseI CAYNNNNRTG 2 cut(s) 24, 123
SapI GCTCTTC 1 cut(s) 120
SaqAI TTAA 2 cut(s) 42, 108
SatI GCNGC 1 cut(s) 30
ScrFI CCNGG 1 cut(s) 143
SetI ASST 2 cut(s) 222, 324
SfaNI GCATC 1 cut(s) 381
SmiMI CAYNNNNRTG 2 cut(s) 24, 123
Sse9I AATT 1 cut(s) 79
SsiI CCGC 1 cut(s) 22
StyD4I CCNGG 1 cut(s) 141
StyI CCWWGG 2 cut(s) 331, 369
TaaI ACNGT 1 cut(s) 238
TasI AATT 1 cut(s) 79
Tru1I TTAA 2 cut(s) 42, 108
Tru9I TTAA 2 cut(s) 42, 108
TscAI CASTG 1 cut(s) 186
TseFI GTSAC 3 cut(s) 232, 238, 254
TseI GCWGC 1 cut(s) 29
Tsp45I GTSAC 3 cut(s) 232, 238, 254
TspDTI ATGAA 1 cut(s) 107
TspRI CASTG 1 cut(s) 186
XcmI CCANNNNNNNNNTGG 1 cut(s) 256
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.