Rh4BG439300

Protein of unknown function (DUF632)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr4B
OG0018839
Physical Location & Seq
Forward (+)
58015784 .. 58016188
405 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh4BG439300.1

Sequence Viewer

Length: 405 bp
ATGGATGACTTGGGCACAAAAGTTGGAGAACTGGTGGACTGGTGGAGTTACAAAAGAAGGAACGTACATGAATGCTCGAGCCAGGTTGATCAAGTCAAACGGGAGCATTGGAAAATTGATGTGCAGAAAATTGAGCAGTCCAGTAAGACCAAGGACAAGTCTTATAAGTTGAGGCAAAGGATAAAAGGAGAGGAAGTGGTATATGAAGCTAGCCGGAATGAGACCGAAAAGATTGCAGTGAATCTAGTTCAGACGAGGTTTACTTCAGTTTTTGGATCCTTGGCTGAATTTTCAAGGACTGTCGCTCAAAAGAACGGTGAGATTGCAAGGGAAAACAATGCATCTGCAGAGGTTAGACAGTTAGGATTTATGTATCTGAGTTCTATGGACAAACAAAAAATGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF630 DUF632

Protein Analysis

134

Amino Acids

15.62

Weight (kDa)

9.18

Isoelectric Point (pI)

41.12

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0018839)

Species Orthologous Gene IDs
fragaria_vesca FvH4_4g36400 FvH4_4g36610 FvH4_4g36631
prunus_persica Prupe.5G138800_v2.0.a1
rosa_laevigata RLG00000005688
rosa_roxburghii Rroxscaffold_5G00386540
rosa_samantha Rh4AG429900 Rh4BG439300 Rh4CG456600

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 165
AclWI GGATC 2 cut(s) 270, 283
AcsI RAATTY 1 cut(s) 287
AcuI CTGAAG 1 cut(s) 249
AfaI GTAC 1 cut(s) 66
AgsI TTSAA 1 cut(s) 294
AjnI CCWGG 1 cut(s) 81
AluBI AGCT 1 cut(s) 209
AluI AGCT 1 cut(s) 209
Alw26I GTCTC 1 cut(s) 215
AlwI GGATC 2 cut(s) 270, 283
Ama87I CYCGRG 1 cut(s) 76
ApoI RAATTY 1 cut(s) 287
AsuHPI GGTGA 1 cut(s) 329
AsuNHI GCTAGC 1 cut(s) 209
AvaI CYCGRG 1 cut(s) 76
BaeGI GKGCMC 1 cut(s) 17
BamHI GGATCC 1 cut(s) 275
BcgI CGANNNNNNTGC 2 cut(s) 215, 249
BciT130I CCWGG 1 cut(s) 83
BclI TGATCA 1 cut(s) 88
BcoDI GTCTC 1 cut(s) 215
BfaI CTAG 2 cut(s) 210, 245
BfmI CTRYAG 1 cut(s) 345
Bme1390I CCNGG 1 cut(s) 83
BmeT110I CYCGRG 1 cut(s) 76
BmiI GGNNCC 1 cut(s) 277
BmrFI CCNGG 1 cut(s) 83
BmsI GCATC 1 cut(s) 350
BmtI GCTAGC 1 cut(s) 213
BsaI GGTCTC 1 cut(s) 215
BsaJI CCNNGG 2 cut(s) 150, 279
BsaXI ACNNNNNCTCC 4 cut(s) 18, 48, 180, 210
Bse1I ACTGG 3 cut(s) 36, 44, 141
BseBI CCWGG 1 cut(s) 83
BseDI CCNNGG 2 cut(s) 150, 279
BseGI GGATG 1 cut(s) 10
BseMII CTCAG 1 cut(s) 368
BseNI ACTGG 3 cut(s) 36, 44, 141
BseSI GKGCMC 1 cut(s) 17
BsgI GTGCAG 1 cut(s) 143
BsiHKCI CYCGRG 1 cut(s) 76
BsiSI CCGG 1 cut(s) 214
BsmAI GTCTC 1 cut(s) 215
BsmI GAATGC 1 cut(s) 77
Bso31I GGTCTC 1 cut(s) 215
BsoBI CYCGRG 1 cut(s) 76
Bsp1286I GDGCHC 1 cut(s) 17
Bsp143I GATC 2 cut(s) 88, 275
BspCNI CTCAG 1 cut(s) 369
BspLI GGNNCC 1 cut(s) 277
BspMAI CTGCAG 1 cut(s) 349
BspOI GCTAGC 1 cut(s) 213
BspPI GGATC 2 cut(s) 270, 283
BspTNI GGTCTC 1 cut(s) 215
BsrI ACTGG 3 cut(s) 36, 44, 141
BssECI CCNNGG 2 cut(s) 150, 279
BssMI GATC 2 cut(s) 88, 275
BssT1I CCWWGG 2 cut(s) 150, 279
Bst2UI CCWGG 1 cut(s) 83
Bst4CI ACNGT 3 cut(s) 301, 317, 360
BstC8I GCNNGC 1 cut(s) 211
BstDEI CTNAG 1 cut(s) 377
BstF5I GGATG 1 cut(s) 10
BstKTI GATC 2 cut(s) 91, 278
BstMAI GTCTC 1 cut(s) 215
BstMBI GATC 2 cut(s) 88, 275
BstNI CCWGG 1 cut(s) 83
BstSCI CCNGG 1 cut(s) 81
BstSFI CTRYAG 1 cut(s) 345
BstSLI GKGCMC 1 cut(s) 17
BstX2I RGATCY 1 cut(s) 275
BstYI RGATCY 1 cut(s) 275
BtsCI GGATG 1 cut(s) 10
BtsI GCAGTG 1 cut(s) 243
BtsIMutI CAGTG 1 cut(s) 243
Cac8I GCNNGC 1 cut(s) 211
Csp6I GTAC 1 cut(s) 65
CviAII CATG 1 cut(s) 68
CviJI RGCY 4 cut(s) 81, 209, 213, 284
CviKI_1 RGCY 4 cut(s) 81, 209, 213, 284
CviQI GTAC 1 cut(s) 65
DdeI CTNAG 1 cut(s) 377
DpnI GATC 2 cut(s) 90, 277
DpnII GATC 2 cut(s) 88, 275
Eco130I CCWWGG 2 cut(s) 150, 279
Eco31I GGTCTC 1 cut(s) 215
Eco57I CTGAAG 1 cut(s) 249
Eco88I CYCGRG 1 cut(s) 76
EcoRII CCWGG 1 cut(s) 81
EcoT14I CCWWGG 2 cut(s) 150, 279
EcoT22I ATGCAT 1 cut(s) 343
ErhI CCWWGG 2 cut(s) 150, 279
FaeI CATG 1 cut(s) 71
FaiI YATR 6 cut(s) 69, 165, 202, 204, 371, 386
FatI CATG 1 cut(s) 67
FbaI TGATCA 1 cut(s) 88
FokI GGATG 1 cut(s) 17
FspBI CTAG 2 cut(s) 210, 245
HapII CCGG 1 cut(s) 214
Hin1II CATG 1 cut(s) 71
HinfI GANTC 1 cut(s) 241
HpaII CCGG 1 cut(s) 214
HphI GGTGA 1 cut(s) 329
Hpy166II GTNNAC 2 cut(s) 37, 261
Hpy188I TCNGA 2 cut(s) 252, 378
Hpy8I GTNNAC 2 cut(s) 37, 261
HpyAV CCTTC 1 cut(s) 51
HpyCH4III ACNGT 3 cut(s) 301, 317, 360
HpyCH4IV ACGT 1 cut(s) 63
HpyCH4V TGCA 5 cut(s) 124, 236, 326, 341, 347
HpyF3I CTNAG 1 cut(s) 377
HpySE526I ACGT 1 cut(s) 63
Hsp92II CATG 1 cut(s) 71
Ksp22I TGATCA 1 cut(s) 88
Kzo9I GATC 2 cut(s) 88, 275
LmnI GCTCC 1 cut(s) 103
LpnPI CCDG 6 cut(s) 17, 25, 68, 95, 154, 227
LweI GCATC 1 cut(s) 350
MaeI CTAG 2 cut(s) 210, 245
MaeII ACGT 1 cut(s) 63
MaeIII GTNAC 1 cut(s) 47
MalI GATC 2 cut(s) 90, 277
MboI GATC 2 cut(s) 88, 275
MflI RGATCY 1 cut(s) 275
MhlI GDGCHC 1 cut(s) 17
MluCI AATT 3 cut(s) 114, 129, 287
MmeI TCCRAC 1 cut(s) 4
MnlI CCTC 4 cut(s) 165, 184, 249, 343
Mph1103I ATGCAT 1 cut(s) 343
MspI CCGG 1 cut(s) 214
MspR9I CCNGG 1 cut(s) 83
Mva1269I GAATGC 1 cut(s) 77
MvaI CCWGG 1 cut(s) 83
NdeII GATC 2 cut(s) 88, 275
NheI GCTAGC 1 cut(s) 209
NlaIII CATG 1 cut(s) 71
NlaIV GGNNCC 1 cut(s) 277
NsiI ATGCAT 1 cut(s) 343
PaeR7I CTCGAG 1 cut(s) 76
PctI GAATGC 1 cut(s) 77
PfeI GAWTC 1 cut(s) 241
PsiI TTATAA 1 cut(s) 165
Psp6I CCWGG 1 cut(s) 81
PspGI CCWGG 1 cut(s) 81
PspN4I GGNNCC 1 cut(s) 277
PspXI VCTCGAGB 1 cut(s) 76
PstI CTGCAG 1 cut(s) 349
PsuI RGATCY 1 cut(s) 275
RsaI GTAC 1 cut(s) 66
RsaNI GTAC 1 cut(s) 65
Sau3AI GATC 2 cut(s) 88, 275
ScrFI CCNGG 1 cut(s) 83
SduI GDGCHC 1 cut(s) 17
SetI ASST 5 cut(s) 66, 87, 211, 260, 354
SfaNI GCATC 1 cut(s) 350
SfcI CTRYAG 1 cut(s) 345
Sfr274I CTCGAG 1 cut(s) 76
SlaI CTCGAG 1 cut(s) 76
SmlI CTYRAG 1 cut(s) 76
SmoI CTYRAG 1 cut(s) 76
Sse9I AATT 3 cut(s) 114, 129, 287
SspMI CTAG 2 cut(s) 210, 245
StyD4I CCNGG 1 cut(s) 81
StyI CCWWGG 2 cut(s) 150, 279
TaaI ACNGT 3 cut(s) 301, 317, 360
TaiI ACGT 1 cut(s) 66
TaqI TCGA 1 cut(s) 77
TaqII GACCGA 1 cut(s) 239
TasI AATT 3 cut(s) 114, 129, 287
TfiI GAWTC 1 cut(s) 241
TscAI CASTG 1 cut(s) 243
TspDTI ATGAA 2 cut(s) 84, 219
TspRI CASTG 1 cut(s) 243
XapI RAATTY 1 cut(s) 287
XhoI CTCGAG 1 cut(s) 76
XspI CTAG 2 cut(s) 210, 245
Zsp2I ATGCAT 1 cut(s) 343
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.