RLG00000005688

Protein of unknown function (DUF632)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr2
OG0018839
Physical Location & Seq
Reverse (-)
824817 .. 825280
464 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000005688

Sequence Viewer

Length: 366 bp
ATGACTGTGACTAAAGCCATGGATGACTTGGGCACAAAAGTTGGAGAGCTGGTGGAGTTACAAAAGAAGCTACATGAACGCACGAGCCAGGTTGATCAAGTCAAACGGGAGCATTGGAAAATTGATGTGCAGAAAATTGAGCAGTCCAGTAAGACCAAGGACAAGTCTTATAAGTTGAGGCAAAGGATAAAAGAAGAGGAAGTGGTATATGAAGCTAGCCGGAATGAGACCGAAAAGATTGCAGTGAATCTAGTTCAGACGAGGTTTACTTCAGTTTTTGGATCCTTGGCTGAATTTTCAAGGACTGTCGCTCAAAAGAACGGTGAGATAGCAAGGGAAAACAATGCATCTGCAGAGGAATATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF630 DUF632

Protein Analysis

122

Amino Acids

13.99

Weight (kDa)

7.91

Isoelectric Point (pI)

30.72

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0018839)

Species Orthologous Gene IDs
fragaria_vesca FvH4_4g36400 FvH4_4g36610 FvH4_4g36631
prunus_persica Prupe.5G138800_v2.0.a1
rosa_laevigata RLG00000005688
rosa_roxburghii Rroxscaffold_5G00386540
rosa_samantha Rh4AG429900 Rh4BG439300 Rh4CG456600

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 171
AclWI GGATC 2 cut(s) 276, 289
AcsI RAATTY 1 cut(s) 293
AcuI CTGAAG 1 cut(s) 255
AgsI TTSAA 1 cut(s) 300
AjnI CCWGG 1 cut(s) 87
AluBI AGCT 3 cut(s) 49, 70, 215
AluI AGCT 3 cut(s) 49, 70, 215
Alw26I GTCTC 1 cut(s) 221
AlwI GGATC 2 cut(s) 276, 289
ApoI RAATTY 1 cut(s) 293
AsuHPI GGTGA 1 cut(s) 335
AsuNHI GCTAGC 1 cut(s) 215
BaeGI GKGCMC 1 cut(s) 35
BamHI GGATCC 1 cut(s) 281
BauI CACGAG 1 cut(s) 82
BcgI CGANNNNNNTGC 2 cut(s) 221, 255
BciT130I CCWGG 1 cut(s) 89
BclI TGATCA 1 cut(s) 94
BcoDI GTCTC 1 cut(s) 221
BfaI CTAG 2 cut(s) 216, 251
BfmI CTRYAG 1 cut(s) 351
Bme1390I CCNGG 1 cut(s) 89
BmiI GGNNCC 1 cut(s) 283
BmrFI CCNGG 1 cut(s) 89
BmsI GCATC 1 cut(s) 356
BmtI GCTAGC 1 cut(s) 219
BsaI GGTCTC 1 cut(s) 221
BsaJI CCNNGG 3 cut(s) 18, 156, 285
BsaXI ACNNNNNCTCC 2 cut(s) 36, 66
Bse1I ACTGG 1 cut(s) 147
BseBI CCWGG 1 cut(s) 89
BseDI CCNNGG 3 cut(s) 18, 156, 285
BseGI GGATG 1 cut(s) 28
BseNI ACTGG 1 cut(s) 147
BseSI GKGCMC 1 cut(s) 35
BsgI GTGCAG 1 cut(s) 149
BsiSI CCGG 1 cut(s) 220
BsmAI GTCTC 1 cut(s) 221
Bso31I GGTCTC 1 cut(s) 221
Bsp1286I GDGCHC 1 cut(s) 35
Bsp143I GATC 2 cut(s) 94, 281
Bsp19I CCATGG 1 cut(s) 18
BspLI GGNNCC 1 cut(s) 283
BspMAI CTGCAG 1 cut(s) 355
BspOI GCTAGC 1 cut(s) 219
BspPI GGATC 2 cut(s) 276, 289
BspTNI GGTCTC 1 cut(s) 221
BsrI ACTGG 1 cut(s) 147
BssECI CCNNGG 3 cut(s) 18, 156, 285
BssMI GATC 2 cut(s) 94, 281
BssSI CACGAG 1 cut(s) 82
BssT1I CCWWGG 3 cut(s) 18, 156, 285
Bst2BI CACGAG 1 cut(s) 82
Bst2UI CCWGG 1 cut(s) 89
Bst4CI ACNGT 3 cut(s) 7, 307, 323
Bst6I CTCTTC 1 cut(s) 189
BstC8I GCNNGC 1 cut(s) 217
BstDSI CCRYGG 1 cut(s) 18
BstF5I GGATG 1 cut(s) 28
BstKTI GATC 2 cut(s) 97, 284
BstMAI GTCTC 1 cut(s) 221
BstMBI GATC 2 cut(s) 94, 281
BstNI CCWGG 1 cut(s) 89
BstSCI CCNGG 1 cut(s) 87
BstSFI CTRYAG 1 cut(s) 351
BstSLI GKGCMC 1 cut(s) 35
BstX2I RGATCY 1 cut(s) 281
BstYI RGATCY 1 cut(s) 281
BtgI CCRYGG 1 cut(s) 18
BtsCI GGATG 1 cut(s) 28
BtsI GCAGTG 1 cut(s) 249
BtsIMutI CAGTG 1 cut(s) 249
Cac8I GCNNGC 1 cut(s) 217
CviAII CATG 2 cut(s) 19, 74
CviJI RGCY 7 cut(s) 17, 49, 70, 87, 215, 219, 290
CviKI_1 RGCY 7 cut(s) 17, 49, 70, 87, 215, 219, 290
DpnI GATC 2 cut(s) 96, 283
DpnII GATC 2 cut(s) 94, 281
Eam1104I CTCTTC 1 cut(s) 189
EarI CTCTTC 1 cut(s) 189
Eco130I CCWWGG 3 cut(s) 18, 156, 285
Eco31I GGTCTC 1 cut(s) 221
Eco57I CTGAAG 1 cut(s) 255
EcoRII CCWGG 1 cut(s) 87
EcoT14I CCWWGG 3 cut(s) 18, 156, 285
EcoT22I ATGCAT 1 cut(s) 349
ErhI CCWWGG 3 cut(s) 18, 156, 285
FaeI CATG 2 cut(s) 22, 77
FaiI YATR 5 cut(s) 20, 75, 171, 208, 210
FatI CATG 2 cut(s) 18, 73
FbaI TGATCA 1 cut(s) 94
FokI GGATG 1 cut(s) 35
FspBI CTAG 2 cut(s) 216, 251
HapII CCGG 1 cut(s) 220
Hin1II CATG 2 cut(s) 22, 77
HinfI GANTC 1 cut(s) 247
HpaII CCGG 1 cut(s) 220
HphI GGTGA 1 cut(s) 335
Hpy166II GTNNAC 1 cut(s) 267
Hpy188I TCNGA 1 cut(s) 258
Hpy8I GTNNAC 1 cut(s) 267
HpyCH4III ACNGT 3 cut(s) 7, 307, 323
HpyCH4V TGCA 4 cut(s) 130, 242, 347, 353
Hsp92II CATG 2 cut(s) 22, 77
Ksp22I TGATCA 1 cut(s) 94
Kzo9I GATC 2 cut(s) 94, 281
LmnI GCTCC 1 cut(s) 109
LpnPI CCDG 5 cut(s) 35, 74, 101, 160, 233
LweI GCATC 1 cut(s) 356
MaeI CTAG 2 cut(s) 216, 251
MaeIII GTNAC 2 cut(s) 7, 57
MalI GATC 2 cut(s) 96, 283
MboI GATC 2 cut(s) 94, 281
MboII GAAGA 1 cut(s) 206
MflI RGATCY 1 cut(s) 281
MhlI GDGCHC 1 cut(s) 35
MluCI AATT 3 cut(s) 120, 135, 293
MmeI TCCRAC 1 cut(s) 22
MnlI CCTC 4 cut(s) 171, 190, 255, 349
Mph1103I ATGCAT 1 cut(s) 349
MspI CCGG 1 cut(s) 220
MspR9I CCNGG 1 cut(s) 89
MvaI CCWGG 1 cut(s) 89
NcoI CCATGG 1 cut(s) 18
NdeII GATC 2 cut(s) 94, 281
NheI GCTAGC 1 cut(s) 215
NlaIII CATG 2 cut(s) 22, 77
NlaIV GGNNCC 1 cut(s) 283
NmuCI GTSAC 1 cut(s) 7
NsiI ATGCAT 1 cut(s) 349
PfeI GAWTC 1 cut(s) 247
PsiI TTATAA 1 cut(s) 171
Psp6I CCWGG 1 cut(s) 87
PspGI CCWGG 1 cut(s) 87
PspN4I GGNNCC 1 cut(s) 283
PstI CTGCAG 1 cut(s) 355
PsuI RGATCY 1 cut(s) 281
Sau3AI GATC 2 cut(s) 94, 281
ScrFI CCNGG 1 cut(s) 89
SduI GDGCHC 1 cut(s) 35
SetI ASST 5 cut(s) 51, 72, 93, 217, 266
SfaNI GCATC 1 cut(s) 356
SfcI CTRYAG 1 cut(s) 351
Sse9I AATT 3 cut(s) 120, 135, 293
SspI AATATT 1 cut(s) 362
SspMI CTAG 2 cut(s) 216, 251
StyD4I CCNGG 1 cut(s) 87
StyI CCWWGG 3 cut(s) 18, 156, 285
TaaI ACNGT 3 cut(s) 7, 307, 323
TaqII GACCGA 1 cut(s) 245
TasI AATT 3 cut(s) 120, 135, 293
TfiI GAWTC 1 cut(s) 247
TscAI CASTG 1 cut(s) 249
TseFI GTSAC 1 cut(s) 7
Tsp45I GTSAC 1 cut(s) 7
TspDTI ATGAA 2 cut(s) 90, 225
TspRI CASTG 1 cut(s) 249
XapI RAATTY 1 cut(s) 293
XcmI CCANNNNNNNNNTGG 1 cut(s) 25
XspI CTAG 2 cut(s) 216, 251
Zsp2I ATGCAT 1 cut(s) 349
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.