Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb5

Orthogroup ID

OG0009115

Physical Location & Seq

Genomic Coordinates Forward (+)

571238 .. 575352

Gene Structure 4115 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_5g00970.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1905 bp

ATGTTTACTGGTGCAGCACCATTTGGGATTGTTGGATTGAGCAATCTTTCATATTTCAATGTGTCCCATAATGAGTTTAACGGGGAGATTCCAGAGATTACAGCATGTAGTGAGACAATGCAGTATTTTGATGCTTCATGGAATGAGTTGGAAGGAGAGGTTCCTTTAAGCATTAAAAACTGTAGAAGTCTCAAGGTTTTGGAGTTGGGGTTTAACAGATTGAGTGGGAGCATCCCAGAGGTGCTTGGGGATCTGGATAGGCTTTTGGTGATTCAGTTATGCAATAATTCACTAAGTGGGACGATTCCAAAGACATTGACAAACATTCAGCTGCTTCAGGTCTTGGATTTGCACAATCTCAACCTTGTCGGTGAAATTCCCAATGACATAAGCAACTGCATGTTTCTTCGACAGCTGGATGTCTCTGGTAATGGTTTACGAGGAGAGATACCTCAGAAGCTTTACAACATGACTTACCTTGAAATCCTTGACCTGCATAAAAACCAGCTCAATGGAAGCATCCCACCAGACCTTGGAAACCTGTCCAGATTACAATTTCTGGATCTGTCACAAAATTTGCTTTCTGGGCTGATTCCTTCTTCTCTTGGAAATCTATCAAATTTGACCTATTTTAACCTCTCCTCCAATGACCTGTCAGGCATTATTCCCACAACAGTCCAAGGGTACGGCCGTTATGCTTTCATTAACAACCCTTATCTCTGTGGTTCCCCTCTGGACCAGCCTTGCTCAGCAAATGGTAATGGTACTGGGATTTCTACTTCGAGGAAACCGAAGGCTCTTCGATTGTCTGCCATCATTGCAATTGTTGCTGCTGCCCTGATTCTTGCTGGAGTTTGTCTAGTATTCATAATGAACATCATAGCTCGCAGAAAGAAGGTAGATGATGTGACAATGGTAATTGAGAGCACACCACTTGGTTCAACTGATTCAAATGTGATTATTGGGAAGTTGGTTCTCTTCAGCAAAAGTTTGCCTTCAAGGTATGAAGACTGGGAATCAGGCACAAAAGCTTTGCTTGACAAAGAATGTATAATAGGTGGTGGATCACTTGGCACTGTCTACAGAACTACGTTTGAAGGTGGCATCTCGATTGCAGTGAAGAAGCTTGAGACTCTGGGAAGGATCAGAAACCAAGAAGAATTTGAGCAAGAAATTGGACGACTGGGGAATCTTCGACATTCCAACTTGGTAGCCTTTCAAGGTTACTACTGGTCCTCAACAATGCAGTTGATGCTATCGGAGTTTGTCCCAAACGGAAACTTGTACGACAATCTACATGGTCTTCATTACCCTGGAACAAGCACTAGCAGTGGAAATAGTGAACTCTATTGGTCGCGGAGATTTAAGATTGCTCTTGGAACAGCAAAAGCTCTTGCCTACCTTCATCATGACTGTAGACCTCCTCTTCTCCATCTCAACATTAAATCCACCAACATACTCTTAGATGAGAACTATGAGGCCAAGTTGTCTGATTATGGACTGGGAAAATTGCTTCCCCTTTTGGATAATCATGGTTTAACCAAATACCACAATGCCGTAGGGTATGTTGCACCAGAGTTGGCTCAAAGTCTAAGACTAAGTGAGAAATGTGATGTGTATAGCTTTGGAGTAATTCTTTTGGAGCTGGTGACAGGAAGAAAACCAGTAGAGAGTCCAACAGAGAATCAGGTTGTGGTTTTGTGTGAATATGTTAGGGGTTTATTGGAGGGTGGCTTTGCTTCAGATTGTTTTGACAGAAGCTTAAGGGGTTTTGTAGAGAATGAACTGATTCAGGTTATGAAGTTGGGGTTGATTTGTACATCTGAGCACCCTTCAAGAAGACCAAGCATGGCTGAAGTTGTTCAGGTTCTTGAGTCCATTAGAAATGGCTCAGAATCATCATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005623 GO:0005886 GO:0016020 GO:0044464 GO:0071944

KEGG Pathways

Metabolic & Signaling

ko04010 ko04064 ko04620 ko04621 ko04624 ko04722 ko05133 ko05140 ko05142 ko05145 ko05152 ko05162 ko05164 map04010 map04064 map04620 map04621 map04624 map04722 map05133 map05140 map05142 map05145 map05152 map05162 map05164

Pfam Domains

Protein Families

LRRNT_2 LRR_1 LRR_4 LRR_6 LRR_8 Pkinase Pkinase_Tyr

Protein Analysis

635

Amino Acids

69.65

Weight (kDa)

5.65

Isoelectric Point (pI)

35.79

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
LRR_14	PF23598	56 - 217	4.3e-10	Leucine-rich repeat region
LRR_8	PF13855	136 - 194	3.9e-06	Leucine rich repeat
LRR_8	PF13855	159 - 218	9.3e-07	Leucine rich repeat
Pkinase	PF00069	349 - 622	2.2e-33	Protein kinase domain
PK_Tyr_Ser-Thr	PF07714	350 - 623	3.5e-34	Protein tyrosine and serine/threonine kinase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0009115)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G12460 AT1G12460
fragaria_vesca	FvH4_5g00970 FvH4_5g00970 FvH4_5g00970
malus_domestica	MD00G1072100.v1.1 MD04G1076300.v1.1
prunus_persica	Prupe.5G083400_v2.0.a1 Prupe.5G083400_v2.0.a1 Prupe.5G083400_v2.0.a1
pyrus_communis	pycom04g06740 pycom06g06590
rosa_chinensis	RchiOBHm_Chr7g0200411
rosa_laevigata	RLG00000003728
rosa_multiflora	Rmu_sc0000617.1_g000043
rosa_roxburghii	Rroxscaffold_3G00256020
rosa_rugosa	Rorug07G0060200
rosa_samantha	Rh7AG185400 Rh7BG188500 Rh7CG195700 Rh7DG189500
rosa_wichuraiana	Rw7G016250

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	501
AccB7I	CCANNNNNTGG	1 cut(s)	533
AccI	GTMKAC	2 cut(s)	1080, 1417
AccII	CGCG	1 cut(s)	1357
AciI	CCGC	1 cut(s)	1357
AclWI	GGATC	4 cut(s)	258, 570, 1072, 1151
AcoI	YGGCCR	1 cut(s)	688
AcsI	RAATTY	4 cut(s)	375, 574, 619, 1160
AcuI	CTGAAG	4 cut(s)	320, 964, 1725, 1875
AdeI	CACNNNGTG	1 cut(s)	296
AfaI	GTAC	4 cut(s)	686, 766, 1286, 1819
AfiI	CCNNNNNNNGG	1 cut(s)	533
AflII	CTTAAG	1 cut(s)	1762
AgsI	TTSAA	8 cut(s)	58, 482, 942, 951, 999, 1097, 1220, 1836
AjnI	CCWGG	1 cut(s)	1312
Alw21I	GWGCWC	2 cut(s)	929, 1830
Alw26I	GTCTC	4 cut(s)	107, 194, 427, 1124
AlwI	GGATC	4 cut(s)	258, 570, 1072, 1151
AoxI	GGCC	2 cut(s)	688, 1479
ApeKI	GCWGC	4 cut(s)	14, 331, 830, 833
ApoI	RAATTY	4 cut(s)	375, 574, 619, 1160
Asp700I	GAANNNNTTC	2 cut(s)	1788, 1860
AspS9I	GGNCC	2 cut(s)	736, 1233
AsuHPI	GGTGA	3 cut(s)	280, 383, 1660
AvaII	GGWCC	2 cut(s)	736, 1233
BaeI	ACNNNNGTAYC	2 cut(s)	676, 709
BbsI	GAAGAC	3 cut(s)	1014, 1295, 1846
Bbv12I	GWGCWC	2 cut(s)	929, 1830
BbvI	GCAGC	4 cut(s)	26, 318, 817, 820
BccI	CCATC	2 cut(s)	821, 1440
BceAI	ACGGC	3 cut(s)	675, 703, 1541
BciT130I	CCWGG	1 cut(s)	1314
BcoDI	GTCTC	4 cut(s)	107, 194, 427, 1124
BfaI	CTAG	2 cut(s)	860, 1326
BfmI	CTRYAG	3 cut(s)	181, 1081, 1414
BfrI	CTTAAG	1 cut(s)	1762
BfuAI	ACCTGC	1 cut(s)	501
BisI	GCNGC	4 cut(s)	15, 332, 831, 834
BlpI	GCTNAGC	1 cut(s)	748
BlsI	GCNGC	4 cut(s)	16, 333, 832, 835
Bme1390I	CCNGG	1 cut(s)	1314
Bme18I	GGWCC	2 cut(s)	736, 1233
BmgT120I	GGNCC	2 cut(s)	736, 1233
BmiI	GGNNCC	2 cut(s)	162, 727
BmrFI	CCNGG	1 cut(s)	1314
BmrI	ACTGGG	4 cut(s)	777, 1021, 1193, 1511
BmsI	GCATC	5 cut(s)	121, 240, 528, 1113, 1242
BmuI	ACTGGG	4 cut(s)	777, 1021, 1193, 1511
BpiI	GAAGAC	3 cut(s)	1014, 1295, 1846
BpmI	CTGGAG	1 cut(s)	870
Bpu1102I	GCTNAGC	1 cut(s)	748
BpuEI	CTTGAG	3 cut(s)	176, 1148, 1892
BsaJI	CCNNGG	3 cut(s)	532, 679, 1312
BsaXI	ACNNNNNCTCC	4 cut(s)	194, 224, 626, 656
Bsc4I	CCNNNNNNNGG	1 cut(s)	533
Bse1I	ACTGG	7 cut(s)	13, 772, 1016, 1188, 1235, 1506, 1664
Bse3DI	GCAATG	1 cut(s)	816
BseBI	CCWGG	1 cut(s)	1314
BseDI	CCNNGG	3 cut(s)	532, 679, 1312
BseGI	GGATG	3 cut(s)	231, 424, 519
BseLI	CCNNNNNNNGG	1 cut(s)	533
BseMI	GCAATG	1 cut(s)	816
BseMII	CTCAG	4 cut(s)	467, 762, 1815, 1905
BseNI	ACTGG	7 cut(s)	13, 772, 1016, 1188, 1235, 1506, 1664
BseRI	GAGGAG	3 cut(s)	456, 631, 1413
BseX3I	CGGCCG	1 cut(s)	688
BseXI	GCAGC	4 cut(s)	26, 318, 817, 820
BsgI	GTGCAG	1 cut(s)	33
Bsh1236I	CGCG	1 cut(s)	1357
Bsh1285I	CGRYCG	1 cut(s)	691
BshFI	GGCC	2 cut(s)	690, 1481
BsiEI	CGRYCG	1 cut(s)	691
BsiHKAI	GWGCWC	2 cut(s)	929, 1830
BslFI	GGGAC	3 cut(s)	49, 313, 1253
BslI	CCNNNNNNNGG	1 cut(s)	533
BsmAI	GTCTC	4 cut(s)	107, 194, 427, 1124
BsmFI	GGGAC	3 cut(s)	49, 313, 1253
BsnI	GGCC	2 cut(s)	690, 1481
Bsp1286I	GDGCHC	2 cut(s)	929, 1830
Bsp1407I	TGTACA	1 cut(s)	1817
Bsp143I	GATC	4 cut(s)	250, 562, 1064, 1143
Bsp1720I	GCTNAGC	1 cut(s)	748
BspACI	CCGC	1 cut(s)	1357
BspANI	GGCC	2 cut(s)	690, 1481
BspCNI	CTCAG	4 cut(s)	466, 761, 1816, 1904
BspFNI	CGCG	1 cut(s)	1357
BspHI	TCATGA	1 cut(s)	1408
BspLI	GGNNCC	2 cut(s)	162, 727
BspMI	ACCTGC	1 cut(s)	501
BspPI	GGATC	4 cut(s)	258, 570, 1072, 1151
BspQI	GCTCTTC	1 cut(s)	804
BspTI	CTTAAG	1 cut(s)	1762
BsrDI	GCAATG	1 cut(s)	816
BsrGI	TGTACA	1 cut(s)	1817
BsrI	ACTGG	7 cut(s)	13, 772, 1016, 1188, 1235, 1506, 1664
BssECI	CCNNGG	3 cut(s)	532, 679, 1312
BssMI	GATC	4 cut(s)	250, 562, 1064, 1143
BssT1I	CCWWGG	2 cut(s)	532, 679
Bst2UI	CCWGG	1 cut(s)	1314
Bst4CI	ACNGT	4 cut(s)	182, 676, 1078, 1415
Bst6I	CTCTTC	3 cut(s)	804, 983, 1431
BstAFI	CTTAAG	1 cut(s)	1762
BstAPI	GCANNNNNTGC	2 cut(s)	827, 1252
BstAUI	TGTACA	1 cut(s)	1817
BstC8I	GCNNGC	1 cut(s)	886
BstDEI	CTNAG	8 cut(s)	293, 453, 748, 1462, 1592, 1598, 1824, 1891
BstF5I	GGATG	3 cut(s)	231, 424, 519
BstFNI	CGCG	1 cut(s)	1357
BstKTI	GATC	4 cut(s)	253, 565, 1067, 1146
BstMAI	GTCTC	4 cut(s)	107, 194, 427, 1124
BstMBI	GATC	4 cut(s)	250, 562, 1064, 1143
BstMCI	CGRYCG	1 cut(s)	691
BstMWI	GCNNNNNNNGC	4 cut(s)	586, 818, 827, 1252
BstNI	CCWGG	1 cut(s)	1314
BstNSI	RCATGY	2 cut(s)	108, 403
BstSCI	CCNGG	1 cut(s)	1312
BstSFI	CTRYAG	3 cut(s)	181, 1081, 1414
BstUI	CGCG	1 cut(s)	1357
BstV1I	GCAGC	4 cut(s)	26, 318, 817, 820
BstV2I	GAAGAC	3 cut(s)	1014, 1295, 1846
BstX2I	RGATCY	2 cut(s)	250, 562
BstXI	CCANNNNNNTGG	1 cut(s)	512
BstYI	RGATCY	2 cut(s)	250, 562
BstZI	CGGCCG	1 cut(s)	688
BsuRI	GGCC	2 cut(s)	690, 1481
BtsCI	GGATG	3 cut(s)	231, 424, 519
BtsI	GCAGTG	2 cut(s)	1122, 1336
BtsIMutI	CAGTG	3 cut(s)	1074, 1122, 1336
BveI	ACCTGC	1 cut(s)	501
Cac8I	GCNNGC	1 cut(s)	886
CciI	TCATGA	1 cut(s)	1408
Cfr13I	GGNCC	2 cut(s)	736, 1233
Csp6I	GTAC	4 cut(s)	685, 765, 1285, 1818
CviAII	CATG	8 cut(s)	105, 138, 400, 469, 1298, 1409, 1532, 1849
CviQI	GTAC	4 cut(s)	685, 765, 1285, 1818
DdeI	CTNAG	8 cut(s)	293, 453, 748, 1462, 1592, 1598, 1824, 1891
DpnI	GATC	4 cut(s)	252, 564, 1066, 1145
DpnII	GATC	4 cut(s)	250, 562, 1064, 1143
DraIII	CACNNNGTG	1 cut(s)	296
EaeI	YGGCCR	1 cut(s)	688
EagI	CGGCCG	1 cut(s)	688
Eam1104I	CTCTTC	3 cut(s)	804, 983, 1431
EarI	CTCTTC	3 cut(s)	804, 983, 1431
EclXI	CGGCCG	1 cut(s)	688
Eco130I	CCWWGG	2 cut(s)	532, 679
Eco47I	GGWCC	2 cut(s)	736, 1233
Eco52I	CGGCCG	1 cut(s)	688
Eco57I	CTGAAG	4 cut(s)	320, 964, 1725, 1875
EcoRII	CCWGG	1 cut(s)	1312
EcoT14I	CCWWGG	2 cut(s)	532, 679
ErhI	CCWWGG	2 cut(s)	532, 679
FaeI	CATG	8 cut(s)	108, 141, 403, 472, 1301, 1412, 1535, 1852
FalI	AAGNNNNNCTT	4 cut(s)	979, 1011, 1020, 1052
FaqI	GGGAC	3 cut(s)	49, 313, 1253
FatI	CATG	8 cut(s)	104, 137, 399, 468, 1297, 1408, 1531, 1848
FblI	GTMKAC	2 cut(s)	1080, 1417
Fnu4HI	GCNGC	4 cut(s)	15, 332, 831, 834
FokI	GGATG	3 cut(s)	218, 431, 506
Fsp4HI	GCNGC	4 cut(s)	15, 332, 831, 834
FspBI	CTAG	2 cut(s)	860, 1326
GluI	GCNGC	4 cut(s)	15, 332, 831, 834
GsuI	CTGGAG	1 cut(s)	870
HaeIII	GGCC	2 cut(s)	690, 1481
Hin1II	CATG	8 cut(s)	108, 141, 403, 472, 1301, 1412, 1535, 1852
HindIII	AAGCTT	4 cut(s)	458, 1029, 1124, 1759
HphI	GGTGA	3 cut(s)	280, 383, 1660
Hpy166II	GTNNAC	5 cut(s)	6, 437, 1081, 1343, 1418
Hpy188I	TCNGA	7 cut(s)	456, 1148, 1261, 1492, 1744, 1825, 1894
Hpy188III	TCNNGA	9 cut(s)	92, 254, 546, 560, 734, 1108, 1409, 1836, 1871
Hpy8I	GTNNAC	5 cut(s)	6, 437, 1081, 1343, 1418
HpyAV	CCTTC	9 cut(s)	146, 606, 787, 889, 1005, 1091, 1134, 1412, 1842
HpyCH4III	ACNGT	4 cut(s)	182, 676, 1078, 1415
HpyCH4IV	ACGT	1 cut(s)	1091
HpyF10VI	GCNNNNNNNGC	4 cut(s)	586, 818, 827, 1252
HpyF3I	CTNAG	8 cut(s)	293, 453, 748, 1462, 1592, 1598, 1824, 1891
HpySE526I	ACGT	1 cut(s)	1091
Hsp92II	CATG	8 cut(s)	108, 141, 403, 472, 1301, 1412, 1535, 1852
Kzo9I	GATC	4 cut(s)	250, 562, 1064, 1143
LguI	GCTCTTC	1 cut(s)	804
LmnI	GCTCC	2 cut(s)	228, 1642
Lsp1109I	GCAGC	4 cut(s)	26, 318, 817, 820
LweI	GCATC	5 cut(s)	121, 240, 528, 1113, 1242
MaeI	CTAG	2 cut(s)	860, 1326
MaeII	ACGT	1 cut(s)	1091
MaeIII	GTNAC	4 cut(s)	567, 907, 1223, 1648
MalI	GATC	4 cut(s)	252, 564, 1066, 1145
MboI	GATC	4 cut(s)	250, 562, 1064, 1143
MfeI	CAATTG	1 cut(s)	822
MflI	RGATCY	2 cut(s)	250, 562
MhlI	GDGCHC	2 cut(s)	929, 1830
MlyI	GAGTC	3 cut(s)	1126, 1681, 1883
MmeI	TCCRAC	4 cut(s)	13, 129, 1227, 1700
MroXI	GAANNNNTTC	2 cut(s)	1788, 1860
MspA1I	CMGCKG	2 cut(s)	331, 415
MspCI	CTTAAG	1 cut(s)	1762
MspR9I	CCNGG	1 cut(s)	1314
MunI	CAATTG	1 cut(s)	822
MvaI	CCWGG	1 cut(s)	1314
MvnI	CGCG	1 cut(s)	1357
MwoI	GCNNNNNNNGC	4 cut(s)	586, 818, 827, 1252
NdeII	GATC	4 cut(s)	250, 562, 1064, 1143
NlaIII	CATG	8 cut(s)	108, 141, 403, 472, 1301, 1412, 1535, 1852
NlaIV	GGNNCC	2 cut(s)	162, 727
NmuCI	GTSAC	3 cut(s)	567, 907, 1648
NspI	RCATGY	2 cut(s)	108, 403
PagI	TCATGA	1 cut(s)	1408
PciSI	GCTCTTC	1 cut(s)	804
PcsI	WCGNNNNNNNCGW	1 cut(s)	788
PdmI	GAANNNNTTC	2 cut(s)	1788, 1860
PflMI	CCANNNNNTGG	1 cut(s)	533
PkrI	GCNGC	4 cut(s)	16, 333, 832, 835
PleI	GAGTC	3 cut(s)	1126, 1680, 1882
PpsI	GAGTC	3 cut(s)	1126, 1680, 1882
Psp6I	CCWGG	1 cut(s)	1312
PspGI	CCWGG	1 cut(s)	1312
PspN4I	GGNNCC	2 cut(s)	162, 727
PspPI	GGNCC	2 cut(s)	736, 1233
PsuI	RGATCY	2 cut(s)	250, 562
PvuII	CAGCTG	2 cut(s)	331, 415
RsaI	GTAC	4 cut(s)	686, 766, 1286, 1819
RsaNI	GTAC	4 cut(s)	685, 765, 1285, 1818
SapI	GCTCTTC	1 cut(s)	804
SatI	GCNGC	4 cut(s)	15, 332, 831, 834
Sau3AI	GATC	4 cut(s)	250, 562, 1064, 1143
Sau96I	GGNCC	2 cut(s)	736, 1233
SchI	GAGTC	3 cut(s)	1126, 1681, 1883
ScrFI	CCNGG	1 cut(s)	1314
SduI	GDGCHC	2 cut(s)	929, 1830
SfaNI	GCATC	5 cut(s)	121, 240, 528, 1113, 1242
SfcI	CTRYAG	3 cut(s)	181, 1081, 1414
SinI	GGWCC	2 cut(s)	736, 1233
SmlI	CTYRAG	4 cut(s)	191, 1127, 1762, 1871
SmoI	CTYRAG	4 cut(s)	191, 1127, 1762, 1871
SsiI	CCGC	1 cut(s)	1357
SspMI	CTAG	2 cut(s)	860, 1326
StyD4I	CCNGG	1 cut(s)	1312
StyI	CCWWGG	2 cut(s)	532, 679
TaaI	ACNGT	4 cut(s)	182, 676, 1078, 1415
TaiI	ACGT	1 cut(s)	1094
TaqI	TCGA	5 cut(s)	409, 782, 802, 1109, 1195
TatI	WGTACW	1 cut(s)	1817
TscAI	CASTG	3 cut(s)	1081, 1122, 1336
TseFI	GTSAC	3 cut(s)	567, 907, 1648
TseI	GCWGC	4 cut(s)	14, 331, 830, 833
Tsp45I	GTSAC	3 cut(s)	567, 907, 1648
TspGWI	ACGGA	1 cut(s)	1290
TspRI	CASTG	3 cut(s)	1081, 1122, 1336
Van91I	CCANNNNNTGG	1 cut(s)	533
Vha464I	CTTAAG	1 cut(s)	1762
VpaK11BI	GGWCC	2 cut(s)	736, 1233
XapI	RAATTY	4 cut(s)	375, 574, 619, 1160
XceI	RCATGY	2 cut(s)	108, 403
XmiI	GTMKAC	2 cut(s)	1080, 1417
XmnI	GAANNNNTTC	2 cut(s)	1788, 1860
XspI	CTAG	2 cut(s)	860, 1326

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.