Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr6

Orthogroup ID

OG0009115

Physical Location & Seq

Genomic Coordinates Forward (+)

10477834 .. 10478493

Gene Structure 660 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom06g06590.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 660 bp

ATGCAGTTGATGCTATCAGAATTTGTCCCAAATGGGAATTTGTATGACAATCTACACAGTGTTCATTATCCAGGACCAAGCACTAGCAGAGGCAATAGTGAACTGTATTGGTGTAGGCGATTTAAGATTGCTTTGGGAACGGCGAAGGCGCTTGCCTACCTTCACCATGACTGTAGACCTCCTATTCTCCATCTAAACATTAAATCCACCAACATACTACTAGATGAGAAATATGAGCCAAAGTTGTCCGATTATGGGTTAGGTAAATTGCTTCCCATATTGGATAACTACGGTTTAACCAAATTCCACAATGCTGTCGGGTATGTTGCACCAGAGCTGGCTCAGAGTCTGAGACTAAGTGAGAAATGTGATGTCTATAGCTTCGGAGTTGTTCTTTTGGAACTGGTCACAGGGAGGAAACCGGTAGAGAGTCCAACTGCAAATGAGGTGGTGGTTTTGTGTGAATATGTTAGGGGATTATTGGAGACTGGCTTTGCTTCAGATTGCTTTGACAGAAGCTTAAGGGATTTTGTAGAGAATGAACTGATCCAGGTGATGAAATTAGGGTTGATTTGTACATCCGAGCTCCCTTCGAAAAGACCAAGCATGGCTGAGGTTATACAGGTTCTTGAATCCATCAGAAACGGATTGGAGGCTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005623 GO:0005886 GO:0016020 GO:0044464 GO:0071944

KEGG Pathways

Metabolic & Signaling

ko04010 ko04064 ko04620 ko04621 ko04624 ko04722 ko05133 ko05140 ko05142 ko05145 ko05152 ko05162 ko05164 map04010 map04064 map04620 map04621 map04624 map04722 map05133 map05140 map05142 map05145 map05152 map05162 map05164

Pfam Domains

Protein Families

LRRNT_2 LRR_1 LRR_4 LRR_6 LRR_8 Pkinase Pkinase_Tyr

Protein Analysis

220

Amino Acids

24.55

Weight (kDa)

5.88

Isoelectric Point (pI)

41.83

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PK_Tyr_Ser-Thr	PF07714	3 - 209	1.7e-22	Protein tyrosine and serine/threonine kinase
Pkinase	PF00069	4 - 208	1.4e-23	Protein kinase domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

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Orthologous Genes (Group: OG0009115)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G12460 AT1G12460
fragaria_vesca	FvH4_5g00970 FvH4_5g00970 FvH4_5g00970
malus_domestica	MD00G1072100.v1.1 MD04G1076300.v1.1
prunus_persica	Prupe.5G083400_v2.0.a1 Prupe.5G083400_v2.0.a1 Prupe.5G083400_v2.0.a1
pyrus_communis	pycom04g06740 pycom06g06590
rosa_chinensis	RchiOBHm_Chr7g0200411
rosa_laevigata	RLG00000003728
rosa_multiflora	Rmu_sc0000617.1_g000043
rosa_roxburghii	Rroxscaffold_3G00256020
rosa_rugosa	Rorug07G0060200
rosa_samantha	Rh7AG185400 Rh7BG188500 Rh7CG195700 Rh7DG189500
rosa_wichuraiana	Rw7G016250

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	175
AclWI	GGATC	1 cut(s)	541
AcsI	RAATTY	3 cut(s)	20, 37, 302
AcuI	CTGAAG	1 cut(s)	483
AfaI	GTAC	1 cut(s)	577
AfiI	CCNNNNNNNGG	1 cut(s)	255
AflII	CTTAAG	1 cut(s)	520
AgeI	ACCGGT	1 cut(s)	421
AgsI	TTSAA	1 cut(s)	632
AjnI	CCWGG	2 cut(s)	70, 549
AluBI	AGCT	4 cut(s)	337, 381, 519, 586
AluI	AGCT	4 cut(s)	337, 381, 519, 586
Alw21I	GWGCWC	1 cut(s)	588
Alw26I	GTCTC	2 cut(s)	346, 479
AlwI	GGATC	1 cut(s)	541
AlwNI	CAGNNNCTG	1 cut(s)	349
ApoI	RAATTY	3 cut(s)	20, 37, 302
AsiGI	ACCGGT	1 cut(s)	421
AspLEI	GCGC	1 cut(s)	151
AspS9I	GGNCC	1 cut(s)	74
AsuHPI	GGTGA	2 cut(s)	155, 565
AsuII	TTCGAA	1 cut(s)	593
AvaII	GGWCC	1 cut(s)	74
BanII	GRGCYC	1 cut(s)	588
Bbv12I	GWGCWC	1 cut(s)	588
BbvCI	CCTCAGC	1 cut(s)	612
BccI	CCATC	2 cut(s)	198, 644
BceAI	ACGGC	1 cut(s)	156
BciT130I	CCWGG	2 cut(s)	72, 551
BcoDI	GTCTC	2 cut(s)	346, 479
BfaI	CTAG	2 cut(s)	84, 221
BfmI	CTRYAG	2 cut(s)	172, 376
BfoI	RGCGCY	1 cut(s)	152
BfrI	CTTAAG	1 cut(s)	520
Bme1390I	CCNGG	2 cut(s)	72, 551
Bme18I	GGWCC	1 cut(s)	74
BmgT120I	GGNCC	1 cut(s)	74
BmrFI	CCNGG	2 cut(s)	72, 551
Bpu10I	CCTNAGC	1 cut(s)	612
Bpu14I	TTCGAA	1 cut(s)	593
BsaWI	WCCGGW	1 cut(s)	421
Bsc4I	CCNNNNNNNGG	1 cut(s)	255
Bse118I	RCCGGY	1 cut(s)	421
Bse1I	ACTGG	2 cut(s)	408, 493
BseBI	CCWGG	2 cut(s)	72, 551
BseGI	GGATG	1 cut(s)	578
BseLI	CCNNNNNNNGG	1 cut(s)	255
BseMII	CTCAG	3 cut(s)	341, 356, 603
BseNI	ACTGG	2 cut(s)	408, 493
BshTI	ACCGGT	1 cut(s)	421
BsiHKAI	GWGCWC	1 cut(s)	588
BsiSI	CCGG	1 cut(s)	422
BslFI	GGGAC	1 cut(s)	11
BslI	CCNNNNNNNGG	1 cut(s)	255
BsmAI	GTCTC	2 cut(s)	346, 479
BsmFI	GGGAC	1 cut(s)	11
Bsp119I	TTCGAA	1 cut(s)	593
Bsp1286I	GDGCHC	1 cut(s)	588
Bsp1407I	TGTACA	1 cut(s)	575
Bsp143I	GATC	1 cut(s)	546
BspCNI	CTCAG	3 cut(s)	342, 355, 604
BspPI	GGATC	1 cut(s)	541
BspT104I	TTCGAA	1 cut(s)	593
BspTI	CTTAAG	1 cut(s)	520
BsrFI	RCCGGY	1 cut(s)	421
BsrGI	TGTACA	1 cut(s)	575
BsrI	ACTGG	2 cut(s)	408, 493
BssAI	RCCGGY	1 cut(s)	421
BssMI	GATC	1 cut(s)	546
Bst2UI	CCWGG	2 cut(s)	72, 551
Bst4CI	ACNGT	4 cut(s)	59, 105, 173, 293
BstAFI	CTTAAG	1 cut(s)	520
BstAPI	GCANNNNNTGC	1 cut(s)	10
BstAUI	TGTACA	1 cut(s)	575
BstBI	TTCGAA	1 cut(s)	593
BstC8I	GCNNGC	2 cut(s)	153, 339
BstDEI	CTNAG	5 cut(s)	342, 350, 356, 612, 657
BstF5I	GGATG	1 cut(s)	578
BstH2I	RGCGCY	1 cut(s)	152
BstHHI	GCGC	1 cut(s)	151
BstKTI	GATC	1 cut(s)	549
BstMAI	GTCTC	2 cut(s)	346, 479
BstMBI	GATC	1 cut(s)	546
BstMWI	GCNNNNNNNGC	1 cut(s)	10
BstNI	CCWGG	2 cut(s)	72, 551
BstSCI	CCNGG	2 cut(s)	70, 549
BstSFI	CTRYAG	2 cut(s)	172, 376
BtsCI	GGATG	1 cut(s)	578
BtsIMutI	CAGTG	1 cut(s)	64
Cac8I	GCNNGC	2 cut(s)	153, 339
CaiI	CAGNNNCTG	1 cut(s)	349
CfoI	GCGC	1 cut(s)	151
Cfr10I	RCCGGY	1 cut(s)	421
Cfr13I	GGNCC	1 cut(s)	74
Csp6I	GTAC	1 cut(s)	576
CspAI	ACCGGT	1 cut(s)	421
CspCI	CAANNNNNGTGG	2 cut(s)	429, 464
CviAII	CATG	2 cut(s)	167, 607
CviJI	RGCY	9 cut(s)	238, 337, 341, 381, 492, 519, 586, 611, 656
CviKI_1	RGCY	9 cut(s)	238, 337, 341, 381, 492, 519, 586, 611, 656
CviQI	GTAC	1 cut(s)	576
DdeI	CTNAG	5 cut(s)	342, 350, 356, 612, 657
DpnI	GATC	1 cut(s)	548
DpnII	GATC	1 cut(s)	546
Ecl136II	GAGCTC	1 cut(s)	586
Eco24I	GRGCYC	1 cut(s)	588
Eco47I	GGWCC	1 cut(s)	74
Eco53kI	GAGCTC	1 cut(s)	586
Eco57I	CTGAAG	1 cut(s)	483
EcoICRI	GAGCTC	1 cut(s)	586
EcoRII	CCWGG	2 cut(s)	70, 549
EcoT38I	GRGCYC	1 cut(s)	588
FaeI	CATG	2 cut(s)	170, 610
FaqI	GGGAC	1 cut(s)	11
FatI	CATG	2 cut(s)	166, 606
FblI	GTMKAC	1 cut(s)	175
FokI	GGATG	1 cut(s)	565
FriOI	GRGCYC	1 cut(s)	588
FspBI	CTAG	2 cut(s)	84, 221
GlaI	GCGC	1 cut(s)	150
HaeII	RGCGCY	1 cut(s)	152
HapII	CCGG	1 cut(s)	422
HhaI	GCGC	1 cut(s)	151
Hin1II	CATG	2 cut(s)	170, 610
Hin6I	GCGC	1 cut(s)	149
HinP1I	GCGC	1 cut(s)	149
HindIII	AAGCTT	1 cut(s)	517
HinfI	GANTC	3 cut(s)	346, 430, 632
HpaII	CCGG	1 cut(s)	422
HphI	GGTGA	2 cut(s)	155, 565
Hpy166II	GTNNAC	2 cut(s)	101, 176
Hpy188I	TCNGA	8 cut(s)	19, 250, 345, 351, 386, 502, 583, 641
Hpy188III	TCNNGA	1 cut(s)	629
Hpy8I	GTNNAC	2 cut(s)	101, 176
HpyAV	CCTTC	3 cut(s)	139, 170, 600
HpyCH4III	ACNGT	4 cut(s)	59, 105, 173, 293
HpyCH4V	TGCA	3 cut(s)	4, 329, 440
HpyF10VI	GCNNNNNNNGC	1 cut(s)	10
HpyF3I	CTNAG	5 cut(s)	342, 350, 356, 612, 657
Hsp92II	CATG	2 cut(s)	170, 610
HspAI	GCGC	1 cut(s)	149
Kzo9I	GATC	1 cut(s)	546
LmnI	GCTCC	1 cut(s)	591
MaeI	CTAG	2 cut(s)	84, 221
MaeIII	GTNAC	1 cut(s)	406
MalI	GATC	1 cut(s)	548
MboI	GATC	1 cut(s)	546
MhlI	GDGCHC	1 cut(s)	588
MluCI	AATT	5 cut(s)	20, 37, 266, 302, 560
MlyI	GAGTC	2 cut(s)	355, 439
MmeI	TCCRAC	1 cut(s)	458
MnlI	CCTC	6 cut(s)	83, 189, 408, 439, 607, 646
MseI	TTAA	4 cut(s)	123, 201, 296, 521
MspCI	CTTAAG	1 cut(s)	520
MspI	CCGG	1 cut(s)	422
MspR9I	CCNGG	2 cut(s)	72, 551
MvaI	CCWGG	2 cut(s)	72, 551
MwoI	GCNNNNNNNGC	1 cut(s)	10
NdeII	GATC	1 cut(s)	546
NlaIII	CATG	2 cut(s)	170, 610
NmuCI	GTSAC	1 cut(s)	406
NspV	TTCGAA	1 cut(s)	593
PfeI	GAWTC	1 cut(s)	632
PfoI	TCCNGGA	1 cut(s)	70
PinAI	ACCGGT	1 cut(s)	421
PleI	GAGTC	2 cut(s)	354, 438
PpsI	GAGTC	2 cut(s)	354, 438
Psp124BI	GAGCTC	1 cut(s)	588
Psp6I	CCWGG	2 cut(s)	70, 549
PspGI	CCWGG	2 cut(s)	70, 549
PspPI	GGNCC	1 cut(s)	74
PstNI	CAGNNNCTG	1 cut(s)	349
RsaI	GTAC	1 cut(s)	577
RsaNI	GTAC	1 cut(s)	576
SacI	GAGCTC	1 cut(s)	588
SaqAI	TTAA	4 cut(s)	123, 201, 296, 521
Sau3AI	GATC	1 cut(s)	546
Sau96I	GGNCC	1 cut(s)	74
SchI	GAGTC	2 cut(s)	355, 439
ScrFI	CCNGG	2 cut(s)	72, 551
SduI	GDGCHC	1 cut(s)	588
SfcI	CTRYAG	2 cut(s)	172, 376
SfuI	TTCGAA	1 cut(s)	593
SinI	GGWCC	1 cut(s)	74
SmlI	CTYRAG	1 cut(s)	520
SmoI	CTYRAG	1 cut(s)	520
Sse9I	AATT	5 cut(s)	20, 37, 266, 302, 560
SspMI	CTAG	2 cut(s)	84, 221
SstI	GAGCTC	1 cut(s)	588
StyD4I	CCNGG	2 cut(s)	70, 549
TaaI	ACNGT	4 cut(s)	59, 105, 173, 293
TaqI	TCGA	1 cut(s)	593
TasI	AATT	5 cut(s)	20, 37, 266, 302, 560
TatI	WGTACW	1 cut(s)	575
TfiI	GAWTC	1 cut(s)	632
Tru1I	TTAA	4 cut(s)	123, 201, 296, 521
Tru9I	TTAA	4 cut(s)	123, 201, 296, 521
TscAI	CASTG	1 cut(s)	64
TseFI	GTSAC	1 cut(s)	406
Tsp45I	GTSAC	1 cut(s)	406
TspDTI	ATGAA	3 cut(s)	53, 555, 572
TspGWI	ACGGA	1 cut(s)	660
TspRI	CASTG	1 cut(s)	64
Vha464I	CTTAAG	1 cut(s)	520
VpaK11BI	GGWCC	1 cut(s)	74
XapI	RAATTY	3 cut(s)	20, 37, 302
XmiI	GTMKAC	1 cut(s)	175
XspI	CTAG	2 cut(s)	84, 221

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.