Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr04

Orthogroup ID

OG0009115

Physical Location & Seq

Genomic Coordinates Reverse (-)

10280425 .. 10284056

Gene Structure 3632 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD04G1076300.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2658 bp

ATGAGAAAGCTTCATACATTTCGCCTTTCTCATGCCCTTTTGTGCTTTGTTGTTGCTTTATTTTTGGCAATCATTGGTGTTAATTCAGTAACTGAGAAGGAGATTTTACTTCAGTTCAAAGGGAATGTAACAAATGATCCGTACAATAGTTTAGGCTCATGGGATTTTACTGGGAATCCTTGCAAGGATTATGGTGGTGTGTTCTGTAACTCTGCTGGGTTTGTGGATAAGATAGTCTTGTGGAATACTAGCATTGGTGGAGTGTTGTCTACGGCTTTGTCCGGGTTGAAATATCTGAGGGTTTTGACATTGTTTGGGAACAGATTTTCAGGAAGTATACCAAACGAGTATGCCAATATTCAATCATTGTATAAGATCAATTTTAGCTCAAATGCGCTATCTGGGTCGGTTCCTGAGTTTATAGGTGACTTGCCTAGCATTAGGCTTCTTGACCTGTCGAGGAATGGTTTTACTGGGCAGATTCCATCGGCTTTGTTTAAGTACTGTTACAAAACCAAGTTTGTTTCTTTGTCTCATAACTTTCTTTTGGGTTCAATTCCGGATTCATTGGCAAATTGCTCGAATCTTGAAGGGTTTGATTTCTCTTTCAACAACCTCAGCGGTGGCATTCCTCTGCGAATTTGCGATATTCCCAGGTTAGATTATTTGTCACTGAGAAGGAATGGCTTATCAGGGAGTGTTGTACAGCAGCTTTCAGCGTGCCAGAGCTTGAAGCTATTGGATCTCAGTAGCAATTTGTTTACTGGTTCAGCACCATTTGGGGTTCTTGGATCGAGCAATCTTACTTATTTCAATGTATCGCATAATGAGTTTACTGGGAAGCTTCCTGATATTACAACTTGTAGTGAGAGAATGGAGTATTTGGATGCTTCATGGAATGAGTTGGATGGAGAGGTTCCTCCGAGCATTACAAACTGTAGAAGTCTCAGGGTTTTGGAGTTGGGGTACAATAGGTTGAGTGGGAGTATCCCAGAAGTTCTTGGAAATCTGGATACGCTTGTCGTGATTGAATTGAGTAATAATTCATTAAGCGGAACTATTCCAGAAAGGCTTGCAAGCATTCAGCTGCTTCAGGTCTTGGATTTGCACAATCTCAACCTTGTTGGTGAAATACCCCATGATATAAGAAATTGCATGTTTCTTCGTGAGTTGGATGTTTCTGGTAATGCCTTGGAGGGAGAAATTCCTCAAGGTCTTTACAACATGACTTACCTTGAAATCCTTGATCTCCATAAAAACCAGCTCAATGGAAGCATCCCGCCAGATGTAGGAAACCTGTCCAGATTACAATATCTGGATCTTTCACAAAATTCACTTTCGGGACCAATTCCTTCTTCCCTTGGAAACCTAACAAAGTTAACCTATTTTAATCTCTCCTCCAATAAGCTTTCAGGCACCATTCCTACAGCTATTCAAGGTTATGGCTCCTATGCATTTATAAACAACCCCTTCCTCTGTGGTGCTCCTTTGGACACACCTTGCTCAGCAACTGGTAATGGTACTATGACTCCCACTTTGAGAAAACCCAAGGCTCTTCGTGTGCCTGCCATCATCGCAATTGCTGCAGCTGCAGTGATTCTTATTGGAGTATGTCTCGTATGCATTATGAACATCAAAGCCCATAGAAAGAAGCAAGCCGATGTGACATTGGTTGTTGAGAGCACGCCACTTGGCTCGACCGATTCAAATGTTATAATCGGTAAGCTGGTTCTCTTCAGCCAAAGTTTGCCTTCAAGGTATGAAGACTGGGAGTCCGGCACAAAAGCATTGCTTGACAAAGAATGTATAATAGGTGGTGGATCAATTGGTACAGTCTACAGGACAAATTTTGAAGGTGGCGTCTCAATTGCAGTGAAGAAGCTCGAGACTCTGGGAAGGATCAGAAACCAAGATGAATTTGAGCAAGAAATTGGACGACTGGGCAACCTTCAGCATCCCAATTTAGTAGCATTTCAAGGCTACTACTGGTCCTCGACGATGCAGTTGATGCTATCAGAATTTGTTCCAAATGGGAATTTGTATGACAATCTACACAGCCTTCATTATCCAGGTCCGAGCACTAGCAGAGGCAATAGTAAGTTGTACTGGTCCAGGCGATTTAAGATTGCTGTGGGAACAGCAAAAGCACTTGCCTACCTTCACCATGACTGTAGGCCTCCTATTCTGCATCTCAACATTAAATCCACCAACATACTGTTAGATGAGAAATACGAGCCAAAGTTATCAGATTATGGGTTAGGGAAATTGCTTCCCATCTTGGATAATTACGGTTTAACCAAATTCCACAATGCTGTTGGATATGTTGCACCAGAGTTGGCTCAGAGTCTGAGACTAAGTGAGAAGTGTGATGTGTATAGCTACGGAGTGATTCTTTTGGAACTGGTCACAGGGAGGAAACCGGTAGAGAGTCCAACTGCAAACGAGGTGGTGGTTCTGTGTGAATATGTTAGGGGGTTATTGGAGAATGGCTTTGCTTCAGATTGCTTCGACAGAAGCTTAAGGGATTTTGTAGAGAATGAACTGATCCAGGTTATGAAATTAGGGTTGATTTGTACATCCGAGCTCCCTTCGAAAAGACCAAGCATGGCTGAGGTTATTCAGGTTCTTGAATCCATCAGAAACGGATTGGAGGCTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005623 GO:0005886 GO:0016020 GO:0044464 GO:0071944

KEGG Pathways

Metabolic & Signaling

ko04010 ko04064 ko04620 ko04621 ko04624 ko04722 ko05133 ko05140 ko05142 ko05145 ko05152 ko05162 ko05164 map04010 map04064 map04620 map04621 map04624 map04722 map05133 map05140 map05142 map05145 map05152 map05162 map05164

Pfam Domains

Protein Families

LRRNT_2 LRR_1 LRR_4 LRR_6 LRR_8 Pkinase Pkinase_Tyr

Protein Analysis

886

Amino Acids

97.02

Weight (kDa)

6.25

Isoelectric Point (pI)

31.91

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
LRR_14	PF23598	305 - 419	3.4e-09	Leucine-rich repeat region
LRR_8	PF13855	388 - 446	9.3e-07	Leucine rich repeat
LRR_8	PF13855	412 - 470	4.9e-07	Leucine rich repeat
Pkinase	PF00069	601 - 874	2.8e-34	Protein kinase domain
PK_Tyr_Ser-Thr	PF07714	602 - 875	8.1e-34	Protein tyrosine and serine/threonine kinase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0009115)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G12460 AT1G12460
fragaria_vesca	FvH4_5g00970 FvH4_5g00970 FvH4_5g00970
malus_domestica	MD00G1072100.v1.1 MD04G1076300.v1.1
prunus_persica	Prupe.5G083400_v2.0.a1 Prupe.5G083400_v2.0.a1 Prupe.5G083400_v2.0.a1
pyrus_communis	pycom04g06740 pycom06g06590
rosa_chinensis	RchiOBHm_Chr7g0200411
rosa_laevigata	RLG00000003728
rosa_multiflora	Rmu_sc0000617.1_g000043
rosa_roxburghii	Rroxscaffold_3G00256020
rosa_rugosa	Rorug07G0060200
rosa_samantha	Rh7AG185400 Rh7BG188500 Rh7CG195700 Rh7DG189500
rosa_wichuraiana	Rw7G016250

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	2 cut(s)	1460, 1715
AccB1I	GGYRCC	1 cut(s)	1415
AccI	GTMKAC	3 cut(s)	269, 337, 1836
AccIII	TCCGGA	1 cut(s)	559
AciI	CCGC	3 cut(s)	621, 1053, 1280
AclWI	GGATC	7 cut(s)	131, 750, 799, 1326, 1828, 1907, 2539
AcsI	RAATTY	8 cut(s)	639, 1203, 1330, 1846, 1916, 2018, 2035, 2300
AcuI	CTGAAG	5 cut(s)	95, 1076, 1720, 1934, 2481
AcyI	GRCGYC	1 cut(s)	1860
AfaI	GTAC	8 cut(s)	143, 503, 705, 968, 1522, 1831, 2105, 2575
AfiI	CCNNNNNNNGG	1 cut(s)	1289
AflII	CTTAAG	1 cut(s)	2518
AgeI	ACCGGT	1 cut(s)	2419
AhdI	GACNNNNNGTC	1 cut(s)	1771
AjnI	CCWGG	4 cut(s)	653, 2068, 2111, 2547
AjuI	GAANNNNNNNTTGG	2 cut(s)	1339, 1371
Alw21I	GWGCWC	4 cut(s)	1486, 1685, 2081, 2586
Alw26I	GTCTC	6 cut(s)	537, 950, 1619, 1867, 1880, 2344
AlwI	GGATC	7 cut(s)	131, 750, 799, 1326, 1828, 1907, 2539
AlwNI	CAGNNNCTG	3 cut(s)	92, 1511, 2347
Ama87I	CYCGRG	1 cut(s)	1883
Aor13HI	TCCGGA	1 cut(s)	559
AoxI	GGCC	1 cut(s)	2174
ApeKI	GCWGC	5 cut(s)	709, 1087, 1583, 1586, 1589
ApoI	RAATTY	8 cut(s)	639, 1203, 1330, 1846, 1916, 2018, 2035, 2300
ArsI	GACNNNNNNTTYG	2 cut(s)	1519, 1551
AsiGI	ACCGGT	1 cut(s)	2419
Asp700I	GAANNNNTTC	1 cut(s)	2022
AspLEI	GCGC	1 cut(s)	397
AspS9I	GGNCC	4 cut(s)	1343, 1989, 2072, 2109
AsuC2I	CCSGG	1 cut(s)	283
AsuHPI	GGTGA	3 cut(s)	437, 1139, 2153
AsuII	TTCGAA	1 cut(s)	2591
AvaI	CYCGRG	1 cut(s)	1883
AvaII	GGWCC	4 cut(s)	1343, 1989, 2072, 2109
BaeI	ACNNNNGTAYC	2 cut(s)	1005, 1038
BanI	GGYRCC	1 cut(s)	1415
BanII	GRGCYC	1 cut(s)	2586
BbsI	GAAGAC	1 cut(s)	1770
Bbv12I	GWGCWC	4 cut(s)	1486, 1685, 2081, 2586
BbvCI	CCTCAGC	2 cut(s)	617, 2610
BbvI	GCAGC	5 cut(s)	721, 1074, 1570, 1576, 1598
BccI	CCATC	5 cut(s)	493, 902, 1577, 2282, 2642
BceAI	ACGGC	1 cut(s)	288
BcgI	CGANNNNNNTGC	2 cut(s)	561, 595
BciT130I	CCWGG	4 cut(s)	655, 2070, 2113, 2549
BciVI	GTATCC	2 cut(s)	998, 1006
BcnI	CCSGG	1 cut(s)	283
BcoDI	GTCTC	6 cut(s)	537, 950, 1619, 1867, 1880, 2344
BfaI	CTAG	3 cut(s)	249, 435, 2082
BfmI	CTRYAG	6 cut(s)	937, 1425, 1584, 1590, 1837, 2170
BfrI	CTTAAG	1 cut(s)	2518
BfuI	GTATCC	2 cut(s)	998, 1006
BisI	GCNGC	5 cut(s)	710, 1088, 1584, 1587, 1590
BlpI	GCTNAGC	1 cut(s)	1504
BlsI	GCNGC	5 cut(s)	711, 1089, 1585, 1588, 1591
BmcAI	AGTACT	1 cut(s)	503
Bme1390I	CCNGG	5 cut(s)	283, 655, 2070, 2113, 2549
Bme18I	GGWCC	4 cut(s)	1343, 1989, 2072, 2109
BmeRI	GACNNNNNGTC	1 cut(s)	1771
BmeT110I	CYCGRG	1 cut(s)	1883
BmgT120I	GGNCC	4 cut(s)	1343, 1989, 2072, 2109
BmiI	GGNNCC	5 cut(s)	411, 918, 1344, 1417, 1447
BmrFI	CCNGG	5 cut(s)	283, 655, 2070, 2113, 2549
BmrI	ACTGGG	5 cut(s)	180, 483, 846, 1777, 1949
BmsI	GCATC	6 cut(s)	877, 1284, 1963, 1989, 1998, 2197
BmuI	ACTGGG	5 cut(s)	180, 483, 846, 1777, 1949
BpiI	GAAGAC	1 cut(s)	1770
BplI	GAGNNNNNCTC	2 cut(s)	1599, 1631
Bpu10I	CCTNAGC	2 cut(s)	617, 2610
Bpu1102I	GCTNAGC	1 cut(s)	1504
Bpu14I	TTCGAA	1 cut(s)	2591
BpuEI	CTTGAG	1 cut(s)	1194
BpuMI	CCSGG	1 cut(s)	283
BsaHI	GRCGYC	1 cut(s)	1860
BsaJI	CCNNGG	4 cut(s)	653, 1191, 1360, 1548
BsaWI	WCCGGW	2 cut(s)	559, 2419
BsaXI	ACNNNNNCTCC	4 cut(s)	950, 980, 1513, 1543
Bsc4I	CCNNNNNNNGG	1 cut(s)	1289
Bse118I	RCCGGY	1 cut(s)	2419
Bse3DI	GCAATG	1 cut(s)	1787
BseAI	TCCGGA	1 cut(s)	559
BseBI	CCWGG	4 cut(s)	655, 2070, 2113, 2549
BseDI	CCNNGG	4 cut(s)	653, 1191, 1360, 1548
BseGI	GGATG	6 cut(s)	892, 913, 1180, 1275, 1954, 2576
BseLI	CCNNNNNNNGG	1 cut(s)	1289
BseMI	GCAATG	1 cut(s)	1787
BseRI	GAGGAG	1 cut(s)	1387
BseXI	GCAGC	5 cut(s)	721, 1074, 1570, 1576, 1598
BseYI	CCCAGC	1 cut(s)	215
Bsh1285I	CGRYCG	1 cut(s)	1701
BshFI	GGCC	1 cut(s)	2176
BshNI	GGYRCC	1 cut(s)	1415
BshTI	ACCGGT	1 cut(s)	2419
BsiEI	CGRYCG	1 cut(s)	1701
BsiHKAI	GWGCWC	4 cut(s)	1486, 1685, 2081, 2586
BsiHKCI	CYCGRG	1 cut(s)	1883
BsiSI	CCGG	4 cut(s)	282, 560, 1776, 2420
BslFI	GGGAC	1 cut(s)	1356
BslI	CCNNNNNNNGG	1 cut(s)	1289
BsmAI	GTCTC	6 cut(s)	537, 950, 1619, 1867, 1880, 2344
BsmBI	CGTCTC	1 cut(s)	1867
BsmFI	GGGAC	1 cut(s)	1356
BsmI	GAATGC	2 cut(s)	627, 1080
BsnI	GGCC	1 cut(s)	2176
BsoBI	CYCGRG	1 cut(s)	1883
Bsp119I	TTCGAA	1 cut(s)	2591
Bsp1286I	GDGCHC	4 cut(s)	1486, 1685, 2081, 2586
Bsp13I	TCCGGA	1 cut(s)	559
Bsp1407I	TGTACA	2 cut(s)	703, 2573
Bsp143I	GATC	9 cut(s)	136, 375, 742, 791, 1246, 1318, 1820, 1899, 2544
Bsp1720I	GCTNAGC	1 cut(s)	1504
BspACI	CCGC	3 cut(s)	621, 1053, 1280
BspANI	GGCC	1 cut(s)	2176
BspEI	TCCGGA	1 cut(s)	559
BspLI	GGNNCC	5 cut(s)	411, 918, 1344, 1417, 1447
BspMAI	CTGCAG	2 cut(s)	1588, 1594
BspPI	GGATC	7 cut(s)	131, 750, 799, 1326, 1828, 1907, 2539
BspQI	GCTCTTC	1 cut(s)	1560
BspT104I	TTCGAA	1 cut(s)	2591
BspT107I	GGYRCC	1 cut(s)	1415
BspTI	CTTAAG	1 cut(s)	2518
BsrDI	GCAATG	1 cut(s)	1787
BsrFI	RCCGGY	1 cut(s)	2419
BsrGI	TGTACA	2 cut(s)	703, 2573
BssAI	RCCGGY	1 cut(s)	2419
BssECI	CCNNGG	4 cut(s)	653, 1191, 1360, 1548
BssMI	GATC	9 cut(s)	136, 375, 742, 791, 1246, 1318, 1820, 1899, 2544
BssNAI	GTATAC	1 cut(s)	338
BssNI	GRCGYC	1 cut(s)	1860
BssT1I	CCWWGG	3 cut(s)	1191, 1360, 1548
Bst1107I	GTATAC	1 cut(s)	338
Bst2UI	CCWGG	4 cut(s)	655, 2070, 2113, 2549
Bst4CI	ACNGT	6 cut(s)	506, 938, 1834, 2171, 2217, 2291
Bst6I	CTCTTC	2 cut(s)	1560, 1739
BstACI	GRCGYC	1 cut(s)	1860
BstAFI	CTTAAG	1 cut(s)	2518
BstAPI	GCANNNNNTGC	2 cut(s)	1583, 2008
BstAUI	TGTACA	2 cut(s)	703, 2573
BstBI	TTCGAA	1 cut(s)	2591
BstC8I	GCNNGC	6 cut(s)	721, 1074, 1078, 1566, 1656, 1685
BstF5I	GGATG	6 cut(s)	892, 913, 1180, 1275, 1954, 2576
BstHHI	GCGC	1 cut(s)	397
BstKTI	GATC	9 cut(s)	139, 378, 745, 794, 1249, 1321, 1823, 1902, 2547
BstMAI	GTCTC	6 cut(s)	537, 950, 1619, 1867, 1880, 2344
BstMBI	GATC	9 cut(s)	136, 375, 742, 791, 1246, 1318, 1820, 1899, 2544
BstMCI	CGRYCG	1 cut(s)	1701
BstMWI	GCNNNNNNNGC	4 cut(s)	1574, 1583, 1589, 2008
BstNI	CCWGG	4 cut(s)	655, 2070, 2113, 2549
BstNSI	RCATGY	1 cut(s)	1159
BstSCI	CCNGG	5 cut(s)	281, 653, 2068, 2111, 2547
BstSFI	CTRYAG	6 cut(s)	937, 1425, 1584, 1590, 1837, 2170
BstV1I	GCAGC	5 cut(s)	721, 1074, 1570, 1576, 1598
BstV2I	GAAGAC	1 cut(s)	1770
BstX2I	RGATCY	2 cut(s)	742, 1318
BstXI	CCANNNNNNTGG	1 cut(s)	1268
BstYI	RGATCY	2 cut(s)	742, 1318
BstZ17I	GTATAC	1 cut(s)	338
BsuI	GTATCC	2 cut(s)	998, 1006
BsuRI	GGCC	1 cut(s)	2176
BtgZI	GCGATG	1 cut(s)	1558
BtsCI	GGATG	6 cut(s)	892, 913, 1180, 1275, 1954, 2576
BtsI	GCAGTG	2 cut(s)	1599, 1878
BtsIMutI	CAGTG	3 cut(s)	671, 1599, 1878
Cac8I	GCNNGC	6 cut(s)	721, 1074, 1078, 1566, 1656, 1685
CaiI	CAGNNNCTG	3 cut(s)	92, 1511, 2347
CfoI	GCGC	1 cut(s)	397
Cfr10I	RCCGGY	1 cut(s)	2419
Cfr13I	GGNCC	4 cut(s)	1343, 1989, 2072, 2109
CseI	GACGC	1 cut(s)	1849
Csp6I	GTAC	8 cut(s)	142, 502, 704, 967, 1521, 1830, 2104, 2574
CspAI	ACCGGT	1 cut(s)	2419
CspCI	CAANNNNNGTGG	2 cut(s)	2427, 2462
CviAII	CATG	8 cut(s)	32, 159, 894, 1139, 1156, 1225, 2165, 2605
CviQI	GTAC	8 cut(s)	142, 502, 704, 967, 1521, 1830, 2104, 2574
DpnI	GATC	9 cut(s)	138, 377, 744, 793, 1248, 1320, 1822, 1901, 2546
DpnII	GATC	9 cut(s)	136, 375, 742, 791, 1246, 1318, 1820, 1899, 2544
DriI	GACNNNNNGTC	1 cut(s)	1771
Eam1104I	CTCTTC	2 cut(s)	1560, 1739
Eam1105I	GACNNNNNGTC	1 cut(s)	1771
EarI	CTCTTC	2 cut(s)	1560, 1739
Ecl136II	GAGCTC	1 cut(s)	2584
Eco130I	CCWWGG	3 cut(s)	1191, 1360, 1548
Eco147I	AGGCCT	1 cut(s)	2176
Eco24I	GRGCYC	1 cut(s)	2586
Eco47I	GGWCC	4 cut(s)	1343, 1989, 2072, 2109
Eco53kI	GAGCTC	1 cut(s)	2584
Eco57I	CTGAAG	5 cut(s)	95, 1076, 1720, 1934, 2481
Eco88I	CYCGRG	1 cut(s)	1883
EcoICRI	GAGCTC	1 cut(s)	2584
EcoRII	CCWGG	4 cut(s)	653, 2068, 2111, 2547
EcoT14I	CCWWGG	3 cut(s)	1191, 1360, 1548
EcoT22I	ATGCAT	2 cut(s)	1456, 1625
EcoT38I	GRGCYC	1 cut(s)	2586
ErhI	CCWWGG	3 cut(s)	1191, 1360, 1548
Esp3I	CGTCTC	1 cut(s)	1867
FaeI	CATG	8 cut(s)	35, 162, 897, 1142, 1159, 1228, 2168, 2608
FalI	AAGNNNNNCTT	6 cut(s)	221, 253, 1735, 1767, 1776, 1808
FaqI	GGGAC	1 cut(s)	1356
FatI	CATG	8 cut(s)	31, 158, 893, 1138, 1155, 1224, 2164, 2604
FauI	CCCGC	1 cut(s)	1287
FblI	GTMKAC	3 cut(s)	269, 337, 1836
Fnu4HI	GCNGC	5 cut(s)	710, 1088, 1584, 1587, 1590
FokI	GGATG	6 cut(s)	899, 920, 1187, 1262, 1941, 2563
FriOI	GRGCYC	1 cut(s)	2586
Fsp4HI	GCNGC	5 cut(s)	710, 1088, 1584, 1587, 1590
FspBI	CTAG	3 cut(s)	249, 435, 2082
GlaI	GCGC	1 cut(s)	396
GluI	GCNGC	5 cut(s)	710, 1088, 1584, 1587, 1590
GsaI	CCCAGC	1 cut(s)	219
HaeIII	GGCC	1 cut(s)	2176
HapII	CCGG	4 cut(s)	282, 560, 1776, 2420
HgaI	GACGC	1 cut(s)	1849
HhaI	GCGC	1 cut(s)	397
Hin1I	GRCGYC	1 cut(s)	1860
Hin1II	CATG	8 cut(s)	35, 162, 897, 1142, 1159, 1228, 2168, 2608
Hin6I	GCGC	1 cut(s)	395
HinP1I	GCGC	1 cut(s)	395
HincII	GTYRAC	1 cut(s)	1380
HindII	GTYRAC	1 cut(s)	1380
HindIII	AAGCTT	4 cut(s)	8, 842, 1406, 2515
HpaI	GTTAAC	1 cut(s)	1380
HpaII	CCGG	4 cut(s)	282, 560, 1776, 2420
HphI	GGTGA	3 cut(s)	437, 1139, 2153
Hpy166II	GTNNAC	6 cut(s)	270, 338, 762, 834, 1380, 1837
Hpy8I	GTNNAC	6 cut(s)	270, 338, 762, 834, 1380, 1837
Hpy99I	CGWCG	1 cut(s)	1999
HpyCH4III	ACNGT	6 cut(s)	506, 938, 1834, 2171, 2217, 2291
HpyF10VI	GCNNNNNNNGC	4 cut(s)	1574, 1583, 1589, 2008
Hsp92I	GRCGYC	1 cut(s)	1860
Hsp92II	CATG	8 cut(s)	35, 162, 897, 1142, 1159, 1228, 2168, 2608
HspAI	GCGC	1 cut(s)	395
Kpn2I	TCCGGA	1 cut(s)	559
KspAI	GTTAAC	1 cut(s)	1380
Kzo9I	GATC	9 cut(s)	136, 375, 742, 791, 1246, 1318, 1820, 1899, 2544
LguI	GCTCTTC	1 cut(s)	1560
LmnI	GCTCC	3 cut(s)	1451, 1489, 2589
Lsp1109I	GCAGC	5 cut(s)	721, 1074, 1570, 1576, 1598
LweI	GCATC	6 cut(s)	877, 1284, 1963, 1989, 1998, 2197
MaeI	CTAG	3 cut(s)	249, 435, 2082
MaeIII	GTNAC	8 cut(s)	88, 127, 206, 425, 506, 669, 1663, 2404
MalI	GATC	9 cut(s)	138, 377, 744, 793, 1248, 1320, 1822, 1901, 2546
MboI	GATC	9 cut(s)	136, 375, 742, 791, 1246, 1318, 1820, 1899, 2544
MboII	GAAGA	6 cut(s)	1154, 1347, 1547, 1726, 1775, 1888
MfeI	CAATTG	3 cut(s)	1578, 1824, 1866
MflI	RGATCY	2 cut(s)	742, 1318
MhlI	GDGCHC	4 cut(s)	1486, 1685, 2081, 2586
MlyI	GAGTC	5 cut(s)	1522, 1781, 1882, 2353, 2437
MmeI	TCCRAC	4 cut(s)	885, 1152, 2296, 2456
Mph1103I	ATGCAT	2 cut(s)	1456, 1625
MroI	TCCGGA	1 cut(s)	559
MroXI	GAANNNNTTC	1 cut(s)	2022
MseI	TTAA	9 cut(s)	81, 498, 1049, 1379, 1389, 2121, 2199, 2294, 2519
MspA1I	CMGCKG	3 cut(s)	621, 1087, 1589
MspCI	CTTAAG	1 cut(s)	2518
MspI	CCGG	4 cut(s)	282, 560, 1776, 2420
MspR9I	CCNGG	5 cut(s)	283, 655, 2070, 2113, 2549
MunI	CAATTG	3 cut(s)	1578, 1824, 1866
Mva1269I	GAATGC	2 cut(s)	627, 1080
MvaI	CCWGG	4 cut(s)	655, 2070, 2113, 2549
MwoI	GCNNNNNNNGC	4 cut(s)	1574, 1583, 1589, 2008
NciI	CCSGG	1 cut(s)	283
NdeII	GATC	9 cut(s)	136, 375, 742, 791, 1246, 1318, 1820, 1899, 2544
NlaIII	CATG	8 cut(s)	35, 162, 897, 1142, 1159, 1228, 2168, 2608
NlaIV	GGNNCC	5 cut(s)	411, 918, 1344, 1417, 1447
NmuCI	GTSAC	4 cut(s)	425, 669, 1663, 2404
NsiI	ATGCAT	2 cut(s)	1456, 1625
NspI	RCATGY	1 cut(s)	1159
NspV	TTCGAA	1 cut(s)	2591
PaeR7I	CTCGAG	1 cut(s)	1883
PceI	AGGCCT	1 cut(s)	2176
PciSI	GCTCTTC	1 cut(s)	1560
PctI	GAATGC	2 cut(s)	627, 1080
PdmI	GAANNNNTTC	1 cut(s)	2022
PfeI	GAWTC	8 cut(s)	175, 481, 563, 583, 1597, 1703, 2389, 2630
PinAI	ACCGGT	1 cut(s)	2419
PkrI	GCNGC	5 cut(s)	711, 1089, 1585, 1588, 1591
PleI	GAGTC	5 cut(s)	1522, 1780, 1882, 2352, 2436
PpsI	GAGTC	5 cut(s)	1522, 1780, 1882, 2352, 2436
PsiI	TTATAA	2 cut(s)	1460, 1715
Psp124BI	GAGCTC	1 cut(s)	2586
Psp6I	CCWGG	4 cut(s)	653, 2068, 2111, 2547
PspFI	CCCAGC	1 cut(s)	215
PspGI	CCWGG	4 cut(s)	653, 2068, 2111, 2547
PspN4I	GGNNCC	5 cut(s)	411, 918, 1344, 1417, 1447
PspPI	GGNCC	4 cut(s)	1343, 1989, 2072, 2109
PstI	CTGCAG	2 cut(s)	1588, 1594
PstNI	CAGNNNCTG	3 cut(s)	92, 1511, 2347
PsuI	RGATCY	2 cut(s)	742, 1318
PvuII	CAGCTG	2 cut(s)	1087, 1589
RsaI	GTAC	8 cut(s)	143, 503, 705, 968, 1522, 1831, 2105, 2575
RsaNI	GTAC	8 cut(s)	142, 502, 704, 967, 1521, 1830, 2104, 2574
SacI	GAGCTC	1 cut(s)	2586
SapI	GCTCTTC	1 cut(s)	1560
SaqAI	TTAA	9 cut(s)	81, 498, 1049, 1379, 1389, 2121, 2199, 2294, 2519
SatI	GCNGC	5 cut(s)	710, 1088, 1584, 1587, 1590
Sau3AI	GATC	9 cut(s)	136, 375, 742, 791, 1246, 1318, 1820, 1899, 2544
Sau96I	GGNCC	4 cut(s)	1343, 1989, 2072, 2109
ScaI	AGTACT	1 cut(s)	503
SchI	GAGTC	5 cut(s)	1522, 1781, 1882, 2353, 2437
ScrFI	CCNGG	5 cut(s)	283, 655, 2070, 2113, 2549
SduI	GDGCHC	4 cut(s)	1486, 1685, 2081, 2586
SfaNI	GCATC	6 cut(s)	877, 1284, 1963, 1989, 1998, 2197
SfcI	CTRYAG	6 cut(s)	937, 1425, 1584, 1590, 1837, 2170
Sfr274I	CTCGAG	1 cut(s)	1883
SfuI	TTCGAA	1 cut(s)	2591
SinI	GGWCC	4 cut(s)	1343, 1989, 2072, 2109
SlaI	CTCGAG	1 cut(s)	1883
SmlI	CTYRAG	3 cut(s)	1209, 1883, 2518
SmoI	CTYRAG	3 cut(s)	1209, 1883, 2518
SseBI	AGGCCT	1 cut(s)	2176
SsiI	CCGC	3 cut(s)	621, 1053, 1280
SspI	AATATT	1 cut(s)	358
SspMI	CTAG	3 cut(s)	249, 435, 2082
SstI	GAGCTC	1 cut(s)	2586
StuI	AGGCCT	1 cut(s)	2176
StyD4I	CCNGG	5 cut(s)	281, 653, 2068, 2111, 2547
StyI	CCWWGG	3 cut(s)	1191, 1360, 1548
TaaI	ACNGT	6 cut(s)	506, 938, 1834, 2171, 2217, 2291
TaqI	TCGA	8 cut(s)	458, 581, 794, 1697, 1884, 1994, 2508, 2591
TaqII	GACCGA	1 cut(s)	1715
TatI	WGTACW	4 cut(s)	501, 703, 2103, 2573
TfiI	GAWTC	8 cut(s)	175, 481, 563, 583, 1597, 1703, 2389, 2630
Tru1I	TTAA	9 cut(s)	81, 498, 1049, 1379, 1389, 2121, 2199, 2294, 2519
Tru9I	TTAA	9 cut(s)	81, 498, 1049, 1379, 1389, 2121, 2199, 2294, 2519
TscAI	CASTG	3 cut(s)	678, 1599, 1878
TseFI	GTSAC	4 cut(s)	425, 669, 1663, 2404
TseI	GCWGC	5 cut(s)	709, 1087, 1583, 1586, 1589
Tsp45I	GTSAC	4 cut(s)	425, 669, 1663, 2404
TspDTI	ATGAA	9 cut(s)	555, 882, 1035, 1643, 1776, 1929, 2051, 2553, 2570
TspGWI	ACGGA	3 cut(s)	129, 2397, 2658
TspRI	CASTG	3 cut(s)	678, 1599, 1878
Vha464I	CTTAAG	1 cut(s)	2518
VpaK11BI	GGWCC	4 cut(s)	1343, 1989, 2072, 2109
XapI	RAATTY	8 cut(s)	639, 1203, 1330, 1846, 1916, 2018, 2035, 2300
XceI	RCATGY	1 cut(s)	1159
XcmI	CCANNNNNNNNNTGG	1 cut(s)	2312
XhoI	CTCGAG	1 cut(s)	1883
XmiI	GTMKAC	3 cut(s)	269, 337, 1836
XmnI	GAANNNNTTC	1 cut(s)	2022
XspI	CTAG	3 cut(s)	249, 435, 2082
ZrmI	AGTACT	1 cut(s)	503
Zsp2I	ATGCAT	2 cut(s)	1456, 1625

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.