Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr4

Orthogroup ID

OG0009115

Physical Location & Seq

Genomic Coordinates Reverse (-)

6960604 .. 6961737

Gene Structure 1134 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom04g06740.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1134 bp

ATGACTCCCACTTCGAGAAAACCCAAGGCTCTTCGTGTCCCTGCCATCATCGCAATTGTTGCAGCTGCAGTGATTCTTATTGGAGTATGTCTCGTATGCATTATGAACATCAAAGCCCGTAGAAAGAAGCAAGCTGATGTGACATTGGTTGTTGAGAGCACGCCACTTGGCTCGACTGATTCAAATGTTATAATCGGTAAGCTGGTTCTCTTCAGCCAAAGTTTGCCTTCAAGGTATGAAGACTGGGAGTCCGGCACAAAAGCGTTGCTTGACAAAGAATGTATAATAGGTGGTGGATCAATTGGTACAGTCTACAGGACGAATTTTGAAGGTGGTGTCTCAATTGCAGTGAAGAAGCTCGAGACTCTGGGAAGGATCAGAAACCAAGATGAATTTGAGCAAGAAATTGGACGACTGGGCAACCTTCAGCATCCCAATTTAGTAGCATTTCAAGGCTACTACTGGTCCTCGACAATGCAGTTGATGCTATCAGAATTTGTTCCAAATGGGAATTTGTTTGACAATCTACACGGCCTTCATTATCCAGGTCCGAGCACTAGCAGAGGCAATAGTAAGTTGTGCTGGTCTAGGCGATTTAAGATTGCTGTGGGAACAGCAAAAGCACTTGCCTACCTTCACCATGACTGCAGGCCTCCTATTCTGCATCTCAACATTAAATCCACCAACATACTGTTAGATGAGAAATACGAGCCAAAGTTATCAGATTATGGGTTAGGGAAATTGCTTCCCATCTTGGATAATTACGGCTTAACCAAATTCCACAATGCAGTTGGATATGTTGCACCAGAGTTGGCTCAGAGTCTGAGACTAAGCGAGAAGTGTGATGTGTATAGCTACGGAGTGATTCTTTTGGAACTGGTCACAGGGAGGAAACCGGTAGAGAGTCCAACTGCAAACGAGGTGGTGGTTCTGTGTGAATATGTTAGGGGGTTATTGGAGAATGGCTTTGCTTCAGATTGCTTCGACAGAAGCTTAAGGGATTTTGTAGAGAATGAACTGATTCAGGTTATGAAATTAGGGTTGATTTGTACATCTGAGCTCCCTTCGAAAAGACCAAGCATGGCTGAGGTTATTCAGGTTCTTGAATCCATCAGAAACGGATTGGAGGCTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005623 GO:0005886 GO:0016020 GO:0044464 GO:0071944

KEGG Pathways

Metabolic & Signaling

ko04010 ko04064 ko04620 ko04621 ko04624 ko04722 ko05133 ko05140 ko05142 ko05145 ko05152 ko05162 ko05164 map04010 map04064 map04620 map04621 map04624 map04722 map05133 map05140 map05142 map05145 map05152 map05162 map05164

Pfam Domains

Protein Families

LRRNT_2 LRR_1 LRR_4 LRR_6 LRR_8 Pkinase Pkinase_Tyr

Protein Analysis

378

Amino Acids

41.67

Weight (kDa)

8.28

Isoelectric Point (pI)

40.88

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Pkinase	PF00069	93 - 366	9.3e-36	Protein kinase domain
PK_Tyr_Ser-Thr	PF07714	94 - 367	4.3e-34	Protein tyrosine and serine/threonine kinase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0009115)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G12460 AT1G12460
fragaria_vesca	FvH4_5g00970 FvH4_5g00970 FvH4_5g00970
malus_domestica	MD00G1072100.v1.1 MD04G1076300.v1.1
prunus_persica	Prupe.5G083400_v2.0.a1 Prupe.5G083400_v2.0.a1 Prupe.5G083400_v2.0.a1
pyrus_communis	pycom04g06740 pycom06g06590
rosa_chinensis	RchiOBHm_Chr7g0200411
rosa_laevigata	RLG00000003728
rosa_multiflora	Rmu_sc0000617.1_g000043
rosa_roxburghii	Rroxscaffold_3G00256020
rosa_rugosa	Rorug07G0060200
rosa_samantha	Rh7AG185400 Rh7BG188500 Rh7CG195700 Rh7DG189500
rosa_wichuraiana	Rw7G016250

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	191
AccI	GTMKAC	1 cut(s)	312
AclWI	GGATC	2 cut(s)	304, 383
AcsI	RAATTY	5 cut(s)	322, 392, 494, 511, 776
AcuI	CTGAAG	3 cut(s)	196, 410, 957
AfaI	GTAC	2 cut(s)	307, 1051
AflII	CTTAAG	1 cut(s)	994
AgeI	ACCGGT	1 cut(s)	895
AgsI	TTSAA	5 cut(s)	183, 231, 329, 452, 1106
AhdI	GACNNNNNGTC	1 cut(s)	247
AjnI	CCWGG	1 cut(s)	544
AluBI	AGCT	7 cut(s)	65, 134, 202, 358, 855, 993, 1060
AluI	AGCT	7 cut(s)	65, 134, 202, 358, 855, 993, 1060
Alw21I	GWGCWC	3 cut(s)	161, 557, 1062
Alw26I	GTCTC	4 cut(s)	95, 343, 356, 820
AlwI	GGATC	2 cut(s)	304, 383
AlwNI	CAGNNNCTG	1 cut(s)	823
Ama87I	CYCGRG	1 cut(s)	359
AoxI	GGCC	2 cut(s)	532, 650
ApeKI	GCWGC	2 cut(s)	62, 65
ApoI	RAATTY	5 cut(s)	322, 392, 494, 511, 776
ArsI	GACNNNNNNTTYG	1 cut(s)	27
AsiGI	ACCGGT	1 cut(s)	895
Asp700I	GAANNNNTTC	2 cut(s)	498, 1020
AspS9I	GGNCC	2 cut(s)	465, 548
AsuHPI	GGTGA	1 cut(s)	629
AsuII	TTCGAA	1 cut(s)	1067
AvaI	CYCGRG	1 cut(s)	359
AvaII	GGWCC	2 cut(s)	465, 548
BanII	GRGCYC	1 cut(s)	1062
BbsI	GAAGAC	1 cut(s)	246
Bbv12I	GWGCWC	3 cut(s)	161, 557, 1062
BbvCI	CCTCAGC	1 cut(s)	1086
BbvI	GCAGC	2 cut(s)	52, 74
BccI	CCATC	3 cut(s)	53, 758, 1118
BceAI	ACGGC	2 cut(s)	547, 781
BciT130I	CCWGG	1 cut(s)	546
BcoDI	GTCTC	4 cut(s)	95, 343, 356, 820
BfaI	CTAG	2 cut(s)	558, 588
BfmI	CTRYAG	3 cut(s)	66, 313, 646
BfrI	CTTAAG	1 cut(s)	994
BisI	GCNGC	2 cut(s)	63, 66
BlsI	GCNGC	2 cut(s)	64, 67
Bme1390I	CCNGG	1 cut(s)	546
Bme18I	GGWCC	2 cut(s)	465, 548
BmeRI	GACNNNNNGTC	1 cut(s)	247
BmeT110I	CYCGRG	1 cut(s)	359
BmgT120I	GGNCC	2 cut(s)	465, 548
BmrFI	CCNGG	1 cut(s)	546
BmrI	ACTGGG	2 cut(s)	253, 425
BmsI	GCATC	3 cut(s)	439, 474, 673
BmuI	ACTGGG	2 cut(s)	253, 425
BpiI	GAAGAC	1 cut(s)	246
BplI	GAGNNNNNCTC	2 cut(s)	75, 107
Bpu10I	CCTNAGC	1 cut(s)	1086
Bpu14I	TTCGAA	1 cut(s)	1067
BsaJI	CCNNGG	1 cut(s)	24
BsaWI	WCCGGW	1 cut(s)	895
Bse118I	RCCGGY	1 cut(s)	895
Bse1I	ACTGG	4 cut(s)	248, 420, 467, 882
BseBI	CCWGG	1 cut(s)	546
BseDI	CCNNGG	1 cut(s)	24
BseGI	GGATG	1 cut(s)	430
BseMII	CTCAG	4 cut(s)	815, 830, 1047, 1077
BseNI	ACTGG	4 cut(s)	248, 420, 467, 882
BseXI	GCAGC	2 cut(s)	52, 74
BshFI	GGCC	2 cut(s)	534, 652
BshTI	ACCGGT	1 cut(s)	895
BsiHKAI	GWGCWC	3 cut(s)	161, 557, 1062
BsiHKCI	CYCGRG	1 cut(s)	359
BsiSI	CCGG	2 cut(s)	252, 896
BslFI	GGGAC	1 cut(s)	23
BsmAI	GTCTC	4 cut(s)	95, 343, 356, 820
BsmFI	GGGAC	1 cut(s)	23
BsnI	GGCC	2 cut(s)	534, 652
BsoBI	CYCGRG	1 cut(s)	359
Bsp119I	TTCGAA	1 cut(s)	1067
Bsp1286I	GDGCHC	3 cut(s)	161, 557, 1062
Bsp1407I	TGTACA	1 cut(s)	1049
Bsp143I	GATC	2 cut(s)	296, 375
BspANI	GGCC	2 cut(s)	534, 652
BspCNI	CTCAG	4 cut(s)	816, 829, 1048, 1078
BspMAI	CTGCAG	2 cut(s)	70, 650
BspPI	GGATC	2 cut(s)	304, 383
BspQI	GCTCTTC	1 cut(s)	36
BspT104I	TTCGAA	1 cut(s)	1067
BspTI	CTTAAG	1 cut(s)	994
BsrFI	RCCGGY	1 cut(s)	895
BsrGI	TGTACA	1 cut(s)	1049
BsrI	ACTGG	4 cut(s)	248, 420, 467, 882
BssAI	RCCGGY	1 cut(s)	895
BssECI	CCNNGG	1 cut(s)	24
BssMI	GATC	2 cut(s)	296, 375
BssT1I	CCWWGG	1 cut(s)	24
Bst2UI	CCWGG	1 cut(s)	546
Bst4CI	ACNGT	2 cut(s)	310, 693
Bst6I	CTCTTC	2 cut(s)	36, 215
BstAFI	CTTAAG	1 cut(s)	994
BstAPI	GCANNNNNTGC	2 cut(s)	59, 484
BstAUI	TGTACA	1 cut(s)	1049
BstBI	TTCGAA	1 cut(s)	1067
BstC8I	GCNNGC	3 cut(s)	132, 161, 650
BstDEI	CTNAG	6 cut(s)	816, 824, 830, 1056, 1086, 1131
BstF5I	GGATG	1 cut(s)	430
BstKTI	GATC	2 cut(s)	299, 378
BstMAI	GTCTC	4 cut(s)	95, 343, 356, 820
BstMBI	GATC	2 cut(s)	296, 375
BstMWI	GCNNNNNNNGC	3 cut(s)	50, 59, 484
BstNI	CCWGG	1 cut(s)	546
BstSCI	CCNGG	1 cut(s)	544
BstSFI	CTRYAG	3 cut(s)	66, 313, 646
BstV1I	GCAGC	2 cut(s)	52, 74
BstV2I	GAAGAC	1 cut(s)	246
BsuRI	GGCC	2 cut(s)	534, 652
BtgZI	GCGATG	1 cut(s)	34
BtsCI	GGATG	1 cut(s)	430
BtsI	GCAGTG	2 cut(s)	75, 354
BtsIMutI	CAGTG	2 cut(s)	75, 354
Cac8I	GCNNGC	3 cut(s)	132, 161, 650
CaiI	CAGNNNCTG	1 cut(s)	823
Cfr10I	RCCGGY	1 cut(s)	895
Cfr13I	GGNCC	2 cut(s)	465, 548
Csp6I	GTAC	2 cut(s)	306, 1050
CspAI	ACCGGT	1 cut(s)	895
CspCI	CAANNNNNGTGG	2 cut(s)	903, 938
CviAII	CATG	2 cut(s)	641, 1081
CviQI	GTAC	2 cut(s)	306, 1050
DdeI	CTNAG	6 cut(s)	816, 824, 830, 1056, 1086, 1131
DpnI	GATC	2 cut(s)	298, 377
DpnII	GATC	2 cut(s)	296, 375
DriI	GACNNNNNGTC	1 cut(s)	247
Eam1104I	CTCTTC	2 cut(s)	36, 215
Eam1105I	GACNNNNNGTC	1 cut(s)	247
EarI	CTCTTC	2 cut(s)	36, 215
Ecl136II	GAGCTC	1 cut(s)	1060
Eco130I	CCWWGG	1 cut(s)	24
Eco147I	AGGCCT	1 cut(s)	652
Eco24I	GRGCYC	1 cut(s)	1062
Eco47I	GGWCC	2 cut(s)	465, 548
Eco53kI	GAGCTC	1 cut(s)	1060
Eco57I	CTGAAG	3 cut(s)	196, 410, 957
Eco88I	CYCGRG	1 cut(s)	359
EcoICRI	GAGCTC	1 cut(s)	1060
EcoRII	CCWGG	1 cut(s)	544
EcoT14I	CCWWGG	1 cut(s)	24
EcoT22I	ATGCAT	1 cut(s)	101
EcoT38I	GRGCYC	1 cut(s)	1062
ErhI	CCWWGG	1 cut(s)	24
FaeI	CATG	2 cut(s)	644, 1084
FalI	AAGNNNNNCTT	4 cut(s)	211, 243, 252, 284
FaqI	GGGAC	1 cut(s)	23
FatI	CATG	2 cut(s)	640, 1080
FblI	GTMKAC	1 cut(s)	312
Fnu4HI	GCNGC	2 cut(s)	63, 66
FokI	GGATG	1 cut(s)	417
FriOI	GRGCYC	1 cut(s)	1062
Fsp4HI	GCNGC	2 cut(s)	63, 66
FspBI	CTAG	2 cut(s)	558, 588
GluI	GCNGC	2 cut(s)	63, 66
HaeIII	GGCC	2 cut(s)	534, 652
HapII	CCGG	2 cut(s)	252, 896
Hin1II	CATG	2 cut(s)	644, 1084
HindIII	AAGCTT	1 cut(s)	991
HpaII	CCGG	2 cut(s)	252, 896
HphI	GGTGA	1 cut(s)	629
Hpy166II	GTNNAC	1 cut(s)	313
Hpy188I	TCNGA	9 cut(s)	380, 493, 552, 724, 819, 825, 976, 1057, 1115
Hpy188III	TCNNGA	3 cut(s)	15, 361, 1103
Hpy8I	GTNNAC	1 cut(s)	313
HpyAV	CCTTC	7 cut(s)	237, 323, 366, 434, 545, 644, 1074
HpyCH4III	ACNGT	2 cut(s)	310, 693
HpyF10VI	GCNNNNNNNGC	3 cut(s)	50, 59, 484
HpyF3I	CTNAG	6 cut(s)	816, 824, 830, 1056, 1086, 1131
Hsp92II	CATG	2 cut(s)	644, 1084
Kzo9I	GATC	2 cut(s)	296, 375
LguI	GCTCTTC	1 cut(s)	36
LmnI	GCTCC	1 cut(s)	1065
Lsp1109I	GCAGC	2 cut(s)	52, 74
LweI	GCATC	3 cut(s)	439, 474, 673
MaeI	CTAG	2 cut(s)	558, 588
MaeIII	GTNAC	2 cut(s)	139, 880
MalI	GATC	2 cut(s)	298, 377
MboI	GATC	2 cut(s)	296, 375
MboII	GAAGA	4 cut(s)	23, 202, 251, 364
MfeI	CAATTG	3 cut(s)	54, 300, 342
MhlI	GDGCHC	3 cut(s)	161, 557, 1062
MlyI	GAGTC	4 cut(s)	257, 358, 829, 913
MmeI	TCCRAC	2 cut(s)	772, 932
MnlI	CCTC	7 cut(s)	478, 557, 663, 882, 913, 1081, 1120
Mph1103I	ATGCAT	1 cut(s)	101
MroXI	GAANNNNTTC	2 cut(s)	498, 1020
MseI	TTAA	4 cut(s)	597, 675, 770, 995
MspA1I	CMGCKG	1 cut(s)	65
MspCI	CTTAAG	1 cut(s)	994
MspI	CCGG	2 cut(s)	252, 896
MspR9I	CCNGG	1 cut(s)	546
MunI	CAATTG	3 cut(s)	54, 300, 342
MvaI	CCWGG	1 cut(s)	546
MwoI	GCNNNNNNNGC	3 cut(s)	50, 59, 484
NdeII	GATC	2 cut(s)	296, 375
NlaIII	CATG	2 cut(s)	644, 1084
NmuCI	GTSAC	2 cut(s)	139, 880
NsiI	ATGCAT	1 cut(s)	101
NspV	TTCGAA	1 cut(s)	1067
PaeR7I	CTCGAG	1 cut(s)	359
PceI	AGGCCT	1 cut(s)	652
PciSI	GCTCTTC	1 cut(s)	36
PdmI	GAANNNNTTC	2 cut(s)	498, 1020
PfeI	GAWTC	5 cut(s)	73, 179, 865, 1021, 1106
PinAI	ACCGGT	1 cut(s)	895
PkrI	GCNGC	2 cut(s)	64, 67
PleI	GAGTC	4 cut(s)	256, 358, 828, 912
PpsI	GAGTC	4 cut(s)	256, 358, 828, 912
PsiI	TTATAA	1 cut(s)	191
Psp124BI	GAGCTC	1 cut(s)	1062
Psp6I	CCWGG	1 cut(s)	544
PspGI	CCWGG	1 cut(s)	544
PspPI	GGNCC	2 cut(s)	465, 548
PstI	CTGCAG	2 cut(s)	70, 650
PstNI	CAGNNNCTG	1 cut(s)	823
PvuII	CAGCTG	1 cut(s)	65
RsaI	GTAC	2 cut(s)	307, 1051
RsaNI	GTAC	2 cut(s)	306, 1050
SacI	GAGCTC	1 cut(s)	1062
SapI	GCTCTTC	1 cut(s)	36
SaqAI	TTAA	4 cut(s)	597, 675, 770, 995
SatI	GCNGC	2 cut(s)	63, 66
Sau3AI	GATC	2 cut(s)	296, 375
Sau96I	GGNCC	2 cut(s)	465, 548
SchI	GAGTC	4 cut(s)	257, 358, 829, 913
ScrFI	CCNGG	1 cut(s)	546
SduI	GDGCHC	3 cut(s)	161, 557, 1062
SfaNI	GCATC	3 cut(s)	439, 474, 673
SfcI	CTRYAG	3 cut(s)	66, 313, 646
Sfr274I	CTCGAG	1 cut(s)	359
SfuI	TTCGAA	1 cut(s)	1067
SinI	GGWCC	2 cut(s)	465, 548
SlaI	CTCGAG	1 cut(s)	359
SmlI	CTYRAG	2 cut(s)	359, 994
SmoI	CTYRAG	2 cut(s)	359, 994
SseBI	AGGCCT	1 cut(s)	652
SspMI	CTAG	2 cut(s)	558, 588
SstI	GAGCTC	1 cut(s)	1062
StuI	AGGCCT	1 cut(s)	652
StyD4I	CCNGG	1 cut(s)	544
StyI	CCWWGG	1 cut(s)	24
TaaI	ACNGT	2 cut(s)	310, 693
TaqI	TCGA	6 cut(s)	14, 173, 360, 470, 984, 1067
TatI	WGTACW	1 cut(s)	1049
TfiI	GAWTC	5 cut(s)	73, 179, 865, 1021, 1106
Tru1I	TTAA	4 cut(s)	597, 675, 770, 995
Tru9I	TTAA	4 cut(s)	597, 675, 770, 995
TscAI	CASTG	2 cut(s)	75, 354
TseFI	GTSAC	2 cut(s)	139, 880
TseI	GCWGC	2 cut(s)	62, 65
Tsp45I	GTSAC	2 cut(s)	139, 880
TspDTI	ATGAA	6 cut(s)	119, 252, 405, 527, 1029, 1046
TspGWI	ACGGA	2 cut(s)	873, 1134
TspRI	CASTG	2 cut(s)	75, 354
Vha464I	CTTAAG	1 cut(s)	994
VpaK11BI	GGWCC	2 cut(s)	465, 548
XapI	RAATTY	5 cut(s)	322, 392, 494, 511, 776
XcmI	CCANNNNNNNNNTGG	1 cut(s)	788
XhoI	CTCGAG	1 cut(s)	359
XmiI	GTMKAC	1 cut(s)	312
XmnI	GAANNNNTTC	2 cut(s)	498, 1020
XspI	CTAG	2 cut(s)	558, 588
Zsp2I	ATGCAT	1 cut(s)	101

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.