FvH4_5g01950

Ribosomal protein S1-like RNA-binding domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb5
OG0010383
Physical Location & Seq
Reverse (-)
1227053 .. 1233247
6195 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_5g01950.t3

Sequence Viewer

Length: 2403 bp
ATGGCCATTAGCGCCTCCCTGAGTTCACCAATCCCAGTTTTCCCTCCAAAAAATACCAACTTTATTGTTTACAGCTCCAAAGATGAGCCCAAGTTGGACCCTTTGGACCAAATGGAGCTCAAGTTTGGTCGCATGATCGGTGAAGACCCCAAACTCACACTTGCCAAGATATTGGGTAGGAAAGCAAACCCAGAAGCTAGTTATATGGATATTGAGAAGAGCTTTTACAAGAACAAGGGTAAGATAGTTGAGATAAAGGAGGTACCTTTTGGTGTGCCCAAGAATGCTGAGGTGTCTAAACCCATGGAGGGTTTGGGTTTGGATATGGTTAGACCTGTGCCAAAGAAAGTTAAGTCATCTCCCTTGGATGGTTTGAATTTGGCTCGGCCGGTGCCGAAAAAAGGAGTTAAATTTGAGGTTGATGATAAGCCTAGAGGGTCTGAGGTTAAGAAGTTGAGTCGACCTGTTGCGCCAAAGGGTGTGGATGGTAGTAAAGGTAGTGTTCCTAATGTGATTTTGAGGAAACCGAGTTTGTTTAGTGAGGATGATGTTGAGGATACGCGGTCGAGGCTGAGGATTAAACCGAATTTGTCATTGAAGATGAGGATTGAGCAGCCTAAGGAGAAGTTTAGTGATATGACATTGTTGAGAAAGCCCGAGCCAGTGATTGTTGATGAAGATAGTGAAAAGAAACAAGATGAATCGTCTAGTAGTGTAGGTAGGAATGGTGTTGGTGATATGACATTGTTGAGAAAACCCGAGGCAGAGAGTATTAATGGAAGTATTGGAAAGATACAAGAGCAATCTAGTAGTGTAGATATGAGTGTTATTGGTGATGCAGAAATGGAGATGTTGAGTGAAGAAGTCAATAATGAAGTTAGTGGTTTCACTCTATTGGAAAAGCCCAAAGCATTAAGTATGGAAAAAAATATTGAAAGTGATAATGAGGAATTTGAGCAAGAAGAGTCTAGTGTTATTGTAGATACTGATGGCTTCAAGGATCTATCTGAAGTTGCTGCAACGAGCGATCTAAGAAGACCCAGTCTCGAGGAATCCAGGGATGGTTTACTTGCAAAGATTCCCAGTCAAACAGATGATTACCCTATAGGATTACAGCCACATAAGCAGAGCACTATGGCGTCCAGTAAGGAGGTCATTGATGAGGATGAAATGTCTAGTACAAGTTCACCTGATTCTAATGTTGAACTTTATGTAGATGCTGCGCTACAAGGAAAACCAAAACGGTTGGACCAACCTGTGAAAAAAGCATCTGTGAATGCAGAAAGCATTGCTGCTGAGCTTGAGAATCCCCTCTCTACATCTCCCAGTGGACATGAAGATGCTGATTGGATTGCAGCTGAAGAATTGGTTAAGACTGGAAATAGGGGAGATGTAGAAGTTATAAGTGCCAGCACCAGAGGTTTTGTTGTATCTTTTCGCTCTTTAGTAGGATTTCTGCCATACCGTAATCTGGCTTTCAAGTGGAAATTCTTAGCTTTTGAGTCATGGTTAAGACGAAAGGGTTTAGATCCGTCCTTGTACAGGCGAAATCTTGGAATTATTGGAAGCTATGATGTCACAAACAAGATTAATCCAAGCCTAGAAAATGATGATATTGTTATTAAAAATGAGGGAGAAGTTACACCGGATATGACACTGGAAGAACTTCTTGGGATATATGACCAAGAGAAAATCAAATTCTTGTCATCATTTATTGGCCAGAAAATCAAAGTAAATGTGGTATTGGCCAACAAAAATTCTGGGAAACTTGTATTTTCAGTGAAGCCAAAAGAGAAGGAAGAGTCAATTCAGAGAAAAAGAAGTCTCATGGCAAAACTTCAAGTTGGTGATGTCGTGAAATGCTGCATCAAGAAAATTACTTATTTTGGTGTTTTTGTTGAGGTCGAAGGAGTGCCTGCACTAATCCATCAGTCAGAAATTTCTTGGGATGCCACTGTGGATCCTTCTTCTTACTTTAAAGTTGGTCAGATTCTCGAGGCAAAAGTTTACCAACTGGATTTTGCACTTGAGCGTATCTTCTTGTCATTGAAGGAGATTATGCCAGATCCATTGATGGAGACCTTGGAGTCAGTGGTTGGTGATAATCAGACCCTGGATGGGAGATTAAAGGCAGCAGAAGCAGATACTGAGTGGGACGATGTAGAATCTCTTATTAAAGAGCTGGAACAGACTGAAGGAATCCAGTCTGTATCAAAAGGTCGTTTTTTCTTGAGCCCAGGATTAGCTCCAACATTTCAGGTTTATATGGCATCCATGTTTGAGAATCAGTACAAGTTACTTGCTCGGTCTGAAAATAAAGTTCAGGAGGTAATAGTTCAAACATCACTGGACAAAGAAGAGATGAAATCTGTGATTCTAAGATGTACCAGCAGAGTAGGCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Ribosomal_L21p S1

Protein Analysis

801

Amino Acids

88.95

Weight (kDa)

5.11

Isoelectric Point (pI)

46.59

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
S1 PF00575 630 - 702 1.3e-13 S1 RNA binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 1403
AasI GACNNNNNNGTC 1 cut(s) 2086
Acc65I GGTACC 1 cut(s) 262
AccB1I GGYRCC 2 cut(s) 262, 391
AccI GTMKAC 1 cut(s) 460
AccII CGCG 1 cut(s) 562
AciI CCGC 1 cut(s) 562
AclWI GGATC 5 cut(s) 1008, 1523, 1955, 1968, 2060
AcoI YGGCCR 4 cut(s) 3, 386, 1717, 1746
AcsI RAATTY 8 cut(s) 376, 410, 586, 950, 1487, 1697, 1756, 1938
AcuI CTGAAG 3 cut(s) 1029, 1380, 2214
AcyI GRCGYC 1 cut(s) 1139
AfaI GTAC 5 cut(s) 264, 1180, 1541, 2291, 2386
AfiI CCNNNNNNNGG 6 cut(s) 308, 368, 401, 1471, 1542, 2118
AgsI TTSAA 9 cut(s) 376, 598, 935, 997, 1205, 1480, 1841, 2050, 2339
AjnI CCWGG 3 cut(s) 1055, 2112, 2236
AjuI GAANNNNNNNTTGG 2 cut(s) 1653, 1685
Alw21I GWGCWC 2 cut(s) 120, 1133
Alw26I GTCTC 3 cut(s) 1049, 1829, 2072
AlwI GGATC 5 cut(s) 1008, 1523, 1955, 1968, 2060
AlwNI CAGNNNCTG 2 cut(s) 2113, 2147
Ama87I CYCGRG 4 cut(s) 656, 758, 1046, 1994
AoxI GGCC 4 cut(s) 3, 386, 1717, 1746
ApeKI GCWGC 7 cut(s) 613, 1016, 1220, 1292, 1355, 1863, 2132
ApoI RAATTY 8 cut(s) 376, 410, 586, 950, 1487, 1697, 1756, 1938
AseI ATTAAT 2 cut(s) 774, 1590
Asp700I GAANNNNTTC 1 cut(s) 1665
Asp718I GGTACC 1 cut(s) 262
AspLEI GCGC 3 cut(s) 14, 472, 1225
AspS9I GGNCC 3 cut(s) 97, 106, 1249
AsuHPI GGTGA 7 cut(s) 18, 152, 746, 845, 1179, 1859, 2111
AvaI CYCGRG 4 cut(s) 656, 758, 1046, 1994
AvaII GGWCC 3 cut(s) 97, 106, 1249
AxyI CCTNAGG 1 cut(s) 618
BaeGI GKGCMC 1 cut(s) 279
BalI TGGCCA 3 cut(s) 5, 1719, 1748
BamHI GGATCC 1 cut(s) 1960
BanI GGYRCC 2 cut(s) 262, 391
BanII GRGCYC 3 cut(s) 90, 120, 2237
BarI GAAGNNNNNNTAC 2 cut(s) 209, 241
BbsI GAAGAC 2 cut(s) 150, 1042
Bbv12I GWGCWC 2 cut(s) 120, 1133
BbvCI CCTCAGC 2 cut(s) 288, 572
BbvI GCAGC 7 cut(s) 625, 1003, 1207, 1279, 1367, 1850, 2144
BccI CCATC 7 cut(s) 362, 479, 983, 1055, 1935, 2068, 2111
BciT130I CCWGG 3 cut(s) 1057, 2114, 2238
BciVI GTATCC 1 cut(s) 550
BcoDI GTCTC 3 cut(s) 1049, 1829, 2072
BfaI CTAG 8 cut(s) 198, 432, 708, 807, 969, 1176, 1601, 2401
BfmI CTRYAG 1 cut(s) 1104
BfoI RGCGCY 1 cut(s) 15
BfuI GTATCC 1 cut(s) 550
BisI GCNGC 7 cut(s) 614, 1017, 1221, 1293, 1356, 1864, 2133
BlpI GCTNAGC 1 cut(s) 1296
BlsI GCNGC 7 cut(s) 615, 1018, 1222, 1294, 1357, 1865, 2134
Bme1390I CCNGG 3 cut(s) 1057, 2114, 2238
Bme18I GGWCC 3 cut(s) 97, 106, 1249
BmeT110I CYCGRG 4 cut(s) 656, 758, 1046, 1994
BmgT120I GGNCC 3 cut(s) 97, 106, 1249
BmiI GGNNCC 4 cut(s) 99, 264, 393, 1962
BmrFI CCNGG 3 cut(s) 1057, 2114, 2238
BmrI ACTGGG 4 cut(s) 29, 1035, 1077, 1320
BmsI GCATC 7 cut(s) 826, 1207, 1277, 1330, 1875, 1939, 2279
BmuI ACTGGG 4 cut(s) 29, 1035, 1077, 1320
BpiI GAAGAC 2 cut(s) 150, 1042
Bpu10I CCTNAGC 2 cut(s) 288, 572
Bpu1102I GCTNAGC 1 cut(s) 1296
BpuEI CTTGAG 4 cut(s) 104, 1322, 2048, 2251
BsaHI GRCGYC 1 cut(s) 1139
BsaI GGTCTC 1 cut(s) 2072
BsaJI CCNNGG 7 cut(s) 303, 363, 759, 1056, 2082, 2112, 2236
BsaWI WCCGGW 1 cut(s) 1645
BsaXI ACNNNNNCTCC 2 cut(s) 107, 137
Bsc4I CCNNNNNNNGG 6 cut(s) 308, 368, 401, 1471, 1542, 2118
Bse118I RCCGGY 1 cut(s) 388
Bse21I CCTNAGG 1 cut(s) 618
Bse3DI GCAATG 1 cut(s) 1287
BseBI CCWGG 3 cut(s) 1057, 2114, 2238
BseDI CCNNGG 7 cut(s) 303, 363, 759, 1056, 2082, 2112, 2236
BseGI GGATG 8 cut(s) 373, 490, 550, 1066, 1171, 1954, 2122, 2270
BseLI CCNNNNNNNGG 6 cut(s) 308, 368, 401, 1471, 1542, 2118
BseMI GCAATG 1 cut(s) 1287
BseMII CTCAG 6 cut(s) 11, 279, 432, 563, 1287, 2139
BseSI GKGCMC 1 cut(s) 279
BseX3I CGGCCG 1 cut(s) 386
BseXI GCAGC 7 cut(s) 625, 1003, 1207, 1279, 1367, 1850, 2144
BsgI GTGCAG 1 cut(s) 1902
Bsh1236I CGCG 1 cut(s) 562
Bsh1285I CGRYCG 2 cut(s) 389, 566
BshFI GGCC 4 cut(s) 5, 388, 1719, 1748
BshNI GGYRCC 2 cut(s) 262, 391
BsiEI CGRYCG 2 cut(s) 389, 566
BsiHKAI GWGCWC 2 cut(s) 120, 1133
BsiHKCI CYCGRG 4 cut(s) 656, 758, 1046, 1994
BsiSI CCGG 2 cut(s) 389, 1646
BslFI GGGAC 1 cut(s) 2168
BslI CCNNNNNNNGG 6 cut(s) 308, 368, 401, 1471, 1542, 2118
BsmAI GTCTC 3 cut(s) 1049, 1829, 2072
BsmFI GGGAC 1 cut(s) 2168
BsmI GAATGC 2 cut(s) 289, 1282
BsnI GGCC 4 cut(s) 5, 388, 1719, 1748
Bso31I GGTCTC 1 cut(s) 2072
BsoBI CYCGRG 4 cut(s) 656, 758, 1046, 1994
Bsp1286I GDGCHC 5 cut(s) 90, 120, 279, 1133, 2237
Bsp1407I TGTACA 1 cut(s) 1539
Bsp143I GATC 6 cut(s) 135, 1000, 1027, 1528, 1960, 2065
Bsp1720I GCTNAGC 1 cut(s) 1296
Bsp19I CCATGG 1 cut(s) 303
BspACI CCGC 1 cut(s) 562
BspANI GGCC 4 cut(s) 5, 388, 1719, 1748
BspCNI CTCAG 6 cut(s) 12, 280, 433, 564, 1288, 2140
BspFNI CGCG 1 cut(s) 562
BspLI GGNNCC 4 cut(s) 99, 264, 393, 1962
BspPI GGATC 5 cut(s) 1008, 1523, 1955, 1968, 2060
BspQI GCTCTTC 1 cut(s) 212
BspT107I GGYRCC 2 cut(s) 262, 391
BspTNI GGTCTC 1 cut(s) 2072
BsrDI GCAATG 1 cut(s) 1287
BsrFI RCCGGY 1 cut(s) 388
BsrGI TGTACA 1 cut(s) 1539
BssAI RCCGGY 1 cut(s) 388
BssECI CCNNGG 7 cut(s) 303, 363, 759, 1056, 2082, 2112, 2236
BssMI GATC 6 cut(s) 135, 1000, 1027, 1528, 1960, 2065
BssNI GRCGYC 1 cut(s) 1139
BssT1I CCWWGG 3 cut(s) 303, 363, 2082
Bst2UI CCWGG 3 cut(s) 1057, 2114, 2238
Bst4CI ACNGT 3 cut(s) 1245, 1466, 1957
Bst6I CTCTTC 4 cut(s) 212, 957, 1794, 2352
BstACI GRCGYC 1 cut(s) 1139
BstAUI TGTACA 1 cut(s) 1539
BstC8I GCNNGC 2 cut(s) 1411, 1917
BstDSI CCRYGG 1 cut(s) 303
BstENI CCTNNNNNAGG 1 cut(s) 1540
BstF5I GGATG 8 cut(s) 373, 490, 550, 1066, 1171, 1954, 2122, 2270
BstFNI CGCG 1 cut(s) 562
BstH2I RGCGCY 1 cut(s) 15
BstHHI GCGC 3 cut(s) 14, 472, 1225
BstKTI GATC 6 cut(s) 138, 1003, 1030, 1531, 1963, 2068
BstMAI GTCTC 3 cut(s) 1049, 1829, 2072
BstMBI GATC 6 cut(s) 135, 1000, 1027, 1528, 1960, 2065
BstMCI CGRYCG 2 cut(s) 389, 566
BstMWI GCNNNNNNNGC 5 cut(s) 11, 568, 1123, 2138, 2397
BstNI CCWGG 3 cut(s) 1057, 2114, 2238
BstSCI CCNGG 3 cut(s) 1055, 2112, 2236
BstSFI CTRYAG 1 cut(s) 1104
BstSLI GKGCMC 1 cut(s) 279
BstUI CGCG 1 cut(s) 562
BstV1I GCAGC 7 cut(s) 625, 1003, 1207, 1279, 1367, 1850, 2144
BstV2I GAAGAC 2 cut(s) 150, 1042
BstX2I RGATCY 4 cut(s) 1000, 1528, 1960, 2065
BstXI CCANNNNNNTGG 1 cut(s) 172
BstYI RGATCY 4 cut(s) 1000, 1528, 1960, 2065
BstZI CGGCCG 1 cut(s) 386
Bsu36I CCTNAGG 1 cut(s) 618
BsuI GTATCC 1 cut(s) 550
BsuRI GGCC 4 cut(s) 5, 388, 1719, 1748
BtgI CCRYGG 1 cut(s) 303
BtsCI GGATG 8 cut(s) 373, 490, 550, 1066, 1171, 1954, 2122, 2270
BtsIMutI CAGTG 7 cut(s) 669, 1333, 1655, 1785, 1953, 2097, 2345
Cac8I GCNNGC 2 cut(s) 1411, 1917
CaiI CAGNNNCTG 2 cut(s) 2113, 2147
CfoI GCGC 3 cut(s) 14, 472, 1225
Cfr10I RCCGGY 1 cut(s) 388
Cfr13I GGNCC 3 cut(s) 97, 106, 1249
CseI GACGC 1 cut(s) 1128
Csp6I GTAC 5 cut(s) 263, 1179, 1540, 2290, 2385
CspCI CAANNNNNGTGG 2 cut(s) 462, 497
CviAII CATG 6 cut(s) 133, 304, 1334, 1506, 1828, 2275
CviQI GTAC 5 cut(s) 263, 1179, 1540, 2290, 2385
DpnI GATC 6 cut(s) 137, 1002, 1029, 1530, 1962, 2067
DpnII GATC 6 cut(s) 135, 1000, 1027, 1528, 1960, 2065
DraI TTTAAA 1 cut(s) 1978
DrdI GACNNNNNNGTC 1 cut(s) 2086
DseDI GACNNNNNNGTC 1 cut(s) 2086
EaeI YGGCCR 4 cut(s) 3, 386, 1717, 1746
EagI CGGCCG 1 cut(s) 386
Eam1104I CTCTTC 4 cut(s) 212, 957, 1794, 2352
EarI CTCTTC 4 cut(s) 212, 957, 1794, 2352
Ecl136II GAGCTC 1 cut(s) 118
EclXI CGGCCG 1 cut(s) 386
Eco130I CCWWGG 3 cut(s) 303, 363, 2082
Eco24I GRGCYC 3 cut(s) 90, 120, 2237
Eco31I GGTCTC 1 cut(s) 2072
Eco47I GGWCC 3 cut(s) 97, 106, 1249
Eco52I CGGCCG 1 cut(s) 386
Eco53kI GAGCTC 1 cut(s) 118
Eco57I CTGAAG 3 cut(s) 1029, 1380, 2214
Eco81I CCTNAGG 1 cut(s) 618
Eco88I CYCGRG 4 cut(s) 656, 758, 1046, 1994
EcoICRI GAGCTC 1 cut(s) 118
EcoNI CCTNNNNNAGG 1 cut(s) 1540
EcoRII CCWGG 3 cut(s) 1055, 2112, 2236
EcoT14I CCWWGG 3 cut(s) 303, 363, 2082
EcoT38I GRGCYC 3 cut(s) 90, 120, 2237
ErhI CCWWGG 3 cut(s) 303, 363, 2082
FaeI CATG 6 cut(s) 136, 307, 1337, 1509, 1831, 2278
FalI AAGNNNNNCTT 2 cut(s) 1653, 1685
FaqI GGGAC 1 cut(s) 2168
FatI CATG 6 cut(s) 132, 303, 1333, 1505, 1827, 2274
FblI GTMKAC 1 cut(s) 460
Fnu4HI GCNGC 7 cut(s) 614, 1017, 1221, 1293, 1356, 1864, 2133
FokI GGATG 8 cut(s) 380, 497, 557, 1073, 1178, 1961, 2129, 2257
FriOI GRGCYC 3 cut(s) 90, 120, 2237
Fsp4HI GCNGC 7 cut(s) 614, 1017, 1221, 1293, 1356, 1864, 2133
FspBI CTAG 8 cut(s) 198, 432, 708, 807, 969, 1176, 1601, 2401
GlaI GCGC 3 cut(s) 13, 471, 1224
GluI GCNGC 7 cut(s) 614, 1017, 1221, 1293, 1356, 1864, 2133
HaeII RGCGCY 1 cut(s) 15
HaeIII GGCC 4 cut(s) 5, 388, 1719, 1748
HapII CCGG 2 cut(s) 389, 1646
HgaI GACGC 1 cut(s) 1128
HhaI GCGC 3 cut(s) 14, 472, 1225
Hin1I GRCGYC 1 cut(s) 1139
Hin1II CATG 6 cut(s) 136, 307, 1337, 1509, 1831, 2278
Hin6I GCGC 3 cut(s) 12, 470, 1223
HinP1I GCGC 3 cut(s) 12, 470, 1223
HincII GTYRAC 1 cut(s) 461
HindII GTYRAC 1 cut(s) 461
HpaII CCGG 2 cut(s) 389, 1646
HphI GGTGA 7 cut(s) 18, 152, 746, 845, 1179, 1859, 2111
Hpy166II GTNNAC 7 cut(s) 26, 70, 461, 1067, 1187, 1331, 2008
Hpy188I TCNGA 7 cut(s) 442, 1009, 1812, 1936, 1989, 2109, 2311
Hpy188III TCNNGA 6 cut(s) 1046, 1855, 1870, 1994, 2230, 2324
Hpy8I GTNNAC 7 cut(s) 26, 70, 461, 1067, 1187, 1331, 2008
HpyAV CCTTC 5 cut(s) 1789, 1901, 1974, 2044, 2189
HpyCH4III ACNGT 3 cut(s) 1245, 1466, 1957
HpyCH4V TGCA 8 cut(s) 839, 1019, 1073, 1280, 1355, 1866, 1919, 2024
HpyF10VI GCNNNNNNNGC 5 cut(s) 11, 568, 1123, 2138, 2397
Hsp92I GRCGYC 1 cut(s) 1139
Hsp92II CATG 6 cut(s) 136, 307, 1337, 1509, 1831, 2278
HspAI GCGC 3 cut(s) 12, 470, 1223
KpnI GGTACC 1 cut(s) 266
Kzo9I GATC 6 cut(s) 135, 1000, 1027, 1528, 1960, 2065
LguI GCTCTTC 1 cut(s) 212
LmnI GCTCC 3 cut(s) 80, 115, 2251
Lsp1109I GCAGC 7 cut(s) 625, 1003, 1207, 1279, 1367, 1850, 2144
LweI GCATC 7 cut(s) 826, 1207, 1277, 1330, 1875, 1939, 2279
MaeI CTAG 8 cut(s) 198, 432, 708, 807, 969, 1176, 1601, 2401
MaeIII GTNAC 3 cut(s) 1576, 1639, 2295
MalI GATC 6 cut(s) 137, 1002, 1029, 1530, 1962, 2067
MboI GATC 6 cut(s) 135, 1000, 1027, 1528, 1960, 2065
MflI RGATCY 4 cut(s) 1000, 1528, 1960, 2065
MhlI GDGCHC 5 cut(s) 90, 120, 279, 1133, 2237
MlsI TGGCCA 3 cut(s) 5, 1719, 1748
MluNI TGGCCA 3 cut(s) 5, 1719, 1748
MlyI GAGTC 5 cut(s) 466, 974, 1511, 1811, 2096
MmeI TCCRAC 3 cut(s) 75, 1227, 2273
Mox20I TGGCCA 3 cut(s) 5, 1719, 1748
MroXI GAANNNNTTC 1 cut(s) 1665
MscI TGGCCA 3 cut(s) 5, 1719, 1748
MslI CAYNNNNRTG 1 cut(s) 1338
Msp20I TGGCCA 3 cut(s) 5, 1719, 1748
MspA1I CMGCKG 1 cut(s) 1358
MspI CCGG 2 cut(s) 389, 1646
MspR9I CCNGG 3 cut(s) 1057, 2114, 2238
Mva1269I GAATGC 2 cut(s) 289, 1282
MvaI CCWGG 3 cut(s) 1057, 2114, 2238
MvnI CGCG 1 cut(s) 562
MwoI GCNNNNNNNGC 5 cut(s) 11, 568, 1123, 2138, 2397
NcoI CCATGG 1 cut(s) 303
NdeII GATC 6 cut(s) 135, 1000, 1027, 1528, 1960, 2065
NlaIII CATG 6 cut(s) 136, 307, 1337, 1509, 1831, 2278
NlaIV GGNNCC 4 cut(s) 99, 264, 393, 1962
NmeAIII GCCGAG 1 cut(s) 364
NmuCI GTSAC 1 cut(s) 1576
PaeR7I CTCGAG 2 cut(s) 1046, 1994
PciSI GCTCTTC 1 cut(s) 212
PctI GAATGC 2 cut(s) 289, 1282
PdmI GAANNNNTTC 1 cut(s) 1665
PflFI GACNNNGTC 1 cut(s) 1041
PkrI GCNGC 7 cut(s) 615, 1018, 1222, 1294, 1357, 1865, 2134
PleI GAGTC 5 cut(s) 465, 973, 1510, 1810, 2095
PpsI GAGTC 5 cut(s) 465, 973, 1510, 1810, 2095
PshBI ATTAAT 2 cut(s) 774, 1590
PsiI TTATAA 1 cut(s) 1403
Psp124BI GAGCTC 1 cut(s) 120
Psp6I CCWGG 3 cut(s) 1055, 2112, 2236
PspGI CCWGG 3 cut(s) 1055, 2112, 2236
PspN4I GGNNCC 4 cut(s) 99, 264, 393, 1962
PspPI GGNCC 3 cut(s) 97, 106, 1249
PstNI CAGNNNCTG 2 cut(s) 2113, 2147
PsuI RGATCY 4 cut(s) 1000, 1528, 1960, 2065
PsyI GACNNNGTC 1 cut(s) 1041
PvuII CAGCTG 1 cut(s) 1358
RsaI GTAC 5 cut(s) 264, 1180, 1541, 2291, 2386
RsaNI GTAC 5 cut(s) 263, 1179, 1540, 2290, 2385
RseI CAYNNNNRTG 1 cut(s) 1338
SacI GAGCTC 1 cut(s) 120
SalI GTCGAC 1 cut(s) 459
SapI GCTCTTC 1 cut(s) 212
SatI GCNGC 7 cut(s) 614, 1017, 1221, 1293, 1356, 1864, 2133
Sau3AI GATC 6 cut(s) 135, 1000, 1027, 1528, 1960, 2065
Sau96I GGNCC 3 cut(s) 97, 106, 1249
SchI GAGTC 5 cut(s) 466, 974, 1511, 1811, 2096
ScrFI CCNGG 3 cut(s) 1057, 2114, 2238
SduI GDGCHC 5 cut(s) 90, 120, 279, 1133, 2237
SfaNI GCATC 7 cut(s) 826, 1207, 1277, 1330, 1875, 1939, 2279
SfcI CTRYAG 1 cut(s) 1104
Sfr274I CTCGAG 2 cut(s) 1046, 1994
SinI GGWCC 3 cut(s) 97, 106, 1249
SlaI CTCGAG 2 cut(s) 1046, 1994
SmiMI CAYNNNNRTG 1 cut(s) 1338
SmlI CTYRAG 6 cut(s) 119, 1046, 1301, 1994, 2027, 2230
SmoI CTYRAG 6 cut(s) 119, 1046, 1301, 1994, 2027, 2230
SsiI CCGC 1 cut(s) 562
SspI AATATT 1 cut(s) 931
SspMI CTAG 8 cut(s) 198, 432, 708, 807, 969, 1176, 1601, 2401
SstI GAGCTC 1 cut(s) 120
StyD4I CCNGG 3 cut(s) 1055, 2112, 2236
StyI CCWWGG 3 cut(s) 303, 363, 2082
TaaI ACNGT 3 cut(s) 1245, 1466, 1957
TaqI TCGA 5 cut(s) 460, 566, 1047, 1905, 1995
TaqII GACCGA 1 cut(s) 2295
TatI WGTACW 3 cut(s) 1178, 1539, 2289
TscAI CASTG 7 cut(s) 669, 1333, 1662, 1785, 1960, 2097, 2352
TseFI GTSAC 1 cut(s) 1576
TseI GCWGC 7 cut(s) 613, 1016, 1220, 1292, 1355, 1863, 2132
Tsp45I GTSAC 1 cut(s) 1576
TspDTI ATGAA 6 cut(s) 690, 714, 888, 1182, 1350, 2378
TspGWI ACGGA 1 cut(s) 1521
TspRI CASTG 7 cut(s) 669, 1333, 1662, 1785, 1960, 2097, 2352
Tth111I GACNNNGTC 1 cut(s) 1041
VpaK11BI GGWCC 3 cut(s) 97, 106, 1249
VspI ATTAAT 2 cut(s) 774, 1590
XagI CCTNNNNNAGG 1 cut(s) 1540
XapI RAATTY 8 cut(s) 376, 410, 586, 950, 1487, 1697, 1756, 1938
XcmI CCANNNNNNNNNTGG 1 cut(s) 310
XhoI CTCGAG 2 cut(s) 1046, 1994
XmiI GTMKAC 1 cut(s) 460
XmnI GAANNNNTTC 1 cut(s) 1665
XspI CTAG 8 cut(s) 198, 432, 708, 807, 969, 1176, 1601, 2401
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.