Rroxscaffold_3G00257700

Ribosomal protein S1-like RNA-binding domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000003
OG0010383
Physical Location & Seq
Reverse (-)
52018764 .. 52029357
10594 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_3G00257700.1

Sequence Viewer

Length: 2775 bp
ATGGAGCTCAAGTTCGGTCGCATGATCGGTGAAGACCCAAAACTTACACTTGCCAAGATATTGGGTAGGAAGGCAAACCCAGAAGCTAGTTATATGGAAATTGAGAAAAGCTTTTACAAGAACAAGGGTAAGATAGTTGAGATAAAGGAGGTGCCTTTTGGTGTGCCCAAGAATGCTCAGGCATCTAAATCCTCGGAAGGTGTGGATATGGTTAGACCTGTGCCAAAGAAAGTTCAGTCATCTCCCTTGGATGGTTTGAACTTGGTTAGGCCAGTGCCGAAAAAAGGAGTTACGTTTGAGGTTGATGATAAGCCAACAAGGTCGGAGGTTAAGAAATTGAGTAGACCTGCTGCACCCAAGGCTGGGGAGGGTCGTAAAGGTAGTGTTCCTAATGTTATTTTGAGAAAGCCAAGTTTGTATAGTGAGGATGATGTTGAAGATACGCGGCCGAGGCTGAGGATTAAACCAAATTTGTCGTTGAAGATGAGGATTGAGCAACCCAAGGAGCAGTTTAGTGATATGACATTGTTGAGAAAGCCCGAGCCGGTGAGTGTTGATGAAAGTAGAGAAAAGGAACAAGAGCAGTCACCTAGTAATGTAGATAGAAAGGCCATTGGTGATATGACATTGTTGAGAAAACCCGAGGCAGAGAGTGTTAATGGAAGTAGTGAAAAGAAACAAGAGCAATCTAGCAGTGTAGATAGGAGTGTTATTGGTGACGCAGAAATGGAGATGTGGAGTGAAGAAGTCAATAATAAAGGTAGTGGTTTCACTCTATTGGAAAAGCCCAAAGCATTGAGTATCGAAAAAAAGATAGAAAGGGATAATGAGGAATCTGAGCAAGAAGAATCTAGTGTTATTGATGATACTGAAAATAATGGCTGCAAGGATTTGTCTGAAGTTGCTGCAACGAGCAATCCAAGACAACCCAGTCTCGAAGAATCCAGGGATGGCTTACATACAAAGATTCCCTGTCAAACAGATGATTACCCTATAGGATTACAGCCACATAAGCAGAGCACTATGGTGTCCAGTAAGGAGGTTACTGCTGAGGATGAAATGCCTAGTAGAAGTTCACCTGTTTCTAATGTTGAATTTTCTGTAGATGCTGCTCTACAAGGAAAACCAAAACGGTTGGACAAGCCTGTGAAAGAAGCGTCTGTGAATGCAGAAACCATTGCTGTTGAGCTTGAGAATCCCATTTCTACATCTGCCAGTGGATATGAAGATGCCGATTGGATTGCAGCCGAAGAATTGGTTAAGACTGGAGATAGGGGAGATGTAGAACTTATAAGTGCTAGCACTAGAGGTTTTGTTGTATCTTTTCGCTCATTAGTAGGATTTCTGCCATACCGTAATCTGGCTTTCAAGTGGAAATTCTTAGCTTTTGAGTCATGGTTAAGACGAAAGGGTTTAGATCCATCCTTGTACAGGCGAAATCTTGGAATTATTGGGAGCTATGATGTCACAAACAAGATTAATCCAAGCCTAGAAAATGATGATATAAAAGTCAAAGTAAATGTGGTATTGGCCAACAAAAAATCTGGGAAACTTGTATTTTCAGTGAGGCCAAAGGAGAAGGAAGAGTCAGTTGAGAGAAAAAGAAGTCTCATGGCAAAACTTCAAGTCGGCGATGTCGTGAAATGCTGCATCAAGAAAATTACTTATTTTGGTGTTTTTGTTGAGGTCGAAGGAGTGCCTGCACTAATCCATCAGACAGAAATATCTTGGGATGCCACTGTGGATCCTTCTTCTTACTTTAAAGTTGGTCAGATTGTTGAGGCAAAAGTTTACCAACTGGATTTTGCACTTGAACGCATCTTCTTGTCATTGAAGGAGATTATGCCAGATCCGTTGATGGAGACCTTGGAGTCGGTGGTTGGTGATAATAAGACCCTGGACGGGAGATTAAAAGCAGCACAAGCAGATACTGAGGTTTATATGGCATCCATGTTTGAGAATCAGTACAAGTTACTTGCTCGGTCTGAAAATAAAGTTCAGGAGGTAATAGTTCAAACATCACTGGACAAAGAAGAGATGAAATCTGTGATTCTAAGATGTACCAGCAGAACAGGGCTCTGTAAATCCTCCAAGCTGTATGAAAAATCACAACCATACAGGCCCTATATGCTACCCAGTTGCTGCAACCTGCAAATATCTGAGAAGTTAACACTGTTAGGTGCTATACAAGGACAAAGAATGAAACTTGATGAATTTTTGTTCTGGTGCTGCCATGGTGTTGTGTTTACACTATCTTGTTATATCCACCATGCAGCTTTTAGCAATTGCTGTGGTAGTCTTCGGATATTTGATTCTCCTGTGCTTCATATTGGTGGGAATCCTGGTGTTCACAGTATTAGCGACTACTCACTTTTACTTGTTGTAATCACTTGTAGGTTCATTGTCACAAACAATGGTTCTGGTCATAGCGTCACTGACCTGAGGTTCAAGGAGTATCAACTTCAGGATTACAGTTCATGGTTTCTAAAAGAATTGAACAATACCCGTAACTGGAAGCACTTAAAGGGTTGTCTTGTGAAATCAGATGATTGCAATAACCTCTCAAAGAAGTATAAGACTCTCAAGAAATTCAAATTGGCAAAGCTGACCCCTATTGAAGCTGGTTGCTGTCGACCTCCGTCTGAATGCGGTTATCCTGCTGTTAATGCCTCATACTATGACTTGAGCTTTCATCCAGTAAGTTCAAACAAGGACTGCAAACTTTACAGAAATGCTCGGGACACCAAGTGCTATAATTGTGATTCCTGCAAGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Ribosomal_L21p S1

Protein Analysis

924

Amino Acids

103.72

Weight (kDa)

8.22

Isoelectric Point (pI)

47.4

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
S1 PF00575 540 - 612 3.6e-13 S1 RNA binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 1292
AasI GACNNNNNNGTC 2 cut(s) 930, 1870
Acc36I ACCTGC 2 cut(s) 355, 2157
AccB1I GGYRCC 1 cut(s) 151
AccI GTMKAC 2 cut(s) 343, 2632
AccII CGCG 1 cut(s) 445
AciI CCGC 2 cut(s) 445, 2649
AclWI GGATC 4 cut(s) 1412, 1739, 1752, 1844
AcoI YGGCCR 2 cut(s) 446, 1530
AcsI RAATTY 5 cut(s) 469, 1094, 1376, 2213, 2588
AcuI CTGAAG 2 cut(s) 918, 2447
AdeI CACNNNGTG 1 cut(s) 2748
AfaI GTAC 3 cut(s) 1430, 1967, 2062
AfiI CCNNNNNNNGG 8 cut(s) 251, 284, 362, 363, 1360, 1431, 1902, 2511
AjnI CCWGG 3 cut(s) 944, 1896, 2341
AjuI GAANNNNNNNTTGG 2 cut(s) 2579, 2611
AleI CACNNNNGTG 1 cut(s) 1025
AloI GAACNNNNNNTCC 1 cut(s) 28
Alw21I GWGCWC 2 cut(s) 9, 1022
Alw26I GTCTC 3 cut(s) 938, 1613, 1856
AlwI GGATC 4 cut(s) 1412, 1739, 1752, 1844
AlwNI CAGNNNCTG 2 cut(s) 1931, 2142
Ama87I CYCGRG 3 cut(s) 539, 641, 2736
AoxI GGCC 6 cut(s) 269, 446, 609, 1530, 1568, 2120
ApoI RAATTY 5 cut(s) 469, 1094, 1376, 2213, 2588
AseI ATTAAT 1 cut(s) 1479
AspS9I GGNCC 1 cut(s) 2121
AsuHPI GGTGA 7 cut(s) 41, 559, 579, 629, 728, 1068, 1895
AsuNHI GCTAGC 1 cut(s) 1298
AvaI CYCGRG 3 cut(s) 539, 641, 2736
AxyI CCTNAGG 1 cut(s) 2441
BaeGI GKGCMC 1 cut(s) 168
BaeI ACNNNNGTAYC 2 cut(s) 1920, 1953
BalI TGGCCA 1 cut(s) 1532
BamHI GGATCC 1 cut(s) 1744
BanI GGYRCC 1 cut(s) 151
BanII GRGCYC 2 cut(s) 9, 2079
BbsI GAAGAC 2 cut(s) 39, 2291
Bbv12I GWGCWC 2 cut(s) 9, 1022
BbvCI CCTCAGC 2 cut(s) 455, 1050
BccI CCATC 5 cut(s) 245, 944, 1429, 1719, 1852
BcgI CGANNNNNNTGC 2 cut(s) 1223, 1257
BciT130I CCWGG 3 cut(s) 946, 1898, 2343
BcoDI GTCTC 3 cut(s) 938, 1613, 1856
BfaI CTAG 8 cut(s) 87, 591, 690, 852, 1065, 1299, 1305, 1490
BfmI CTRYAG 2 cut(s) 993, 1101
BfuAI ACCTGC 2 cut(s) 355, 2157
Bme1390I CCNGG 3 cut(s) 946, 1898, 2343
BmeT110I CYCGRG 3 cut(s) 539, 641, 2736
BmgT120I GGNCC 1 cut(s) 2121
BmiI GGNNCC 2 cut(s) 153, 1746
BmrFI CCNGG 3 cut(s) 946, 1898, 2343
BmrI ACTGGG 2 cut(s) 924, 2130
BmsI GCATC 7 cut(s) 191, 1096, 1219, 1659, 1723, 1827, 1955
BmtI GCTAGC 1 cut(s) 1302
BmuI ACTGGG 2 cut(s) 924, 2130
BoxI GACNNNNGTC 1 cut(s) 2638
BpiI GAAGAC 2 cut(s) 39, 2291
BpmI CTGGAG 1 cut(s) 1287
Bpu10I CCTNAGC 3 cut(s) 177, 455, 1050
BpuEI CTTGAG 3 cut(s) 1211, 2567, 2704
BsaI GGTCTC 1 cut(s) 1856
BsaXI ACNNNNNCTCC 1 cut(s) 26
Bsc4I CCNNNNNNNGG 8 cut(s) 251, 284, 362, 363, 1360, 1431, 1902, 2511
Bse118I RCCGGY 1 cut(s) 544
Bse21I CCTNAGG 1 cut(s) 2441
Bse3DI GCAATG 1 cut(s) 1176
BseBI CCWGG 3 cut(s) 946, 1898, 2343
BseGI GGATG 8 cut(s) 256, 433, 955, 1060, 1421, 1738, 1946, 2692
BseLI CCNNNNNNNGG 8 cut(s) 251, 284, 362, 363, 1360, 1431, 1902, 2511
BseMI GCAATG 1 cut(s) 1176
BseMII CTCAG 7 cut(s) 191, 446, 828, 1041, 1923, 2151, 2432
BseSI GKGCMC 1 cut(s) 168
BseX3I CGGCCG 1 cut(s) 446
BseYI CCCAGC 1 cut(s) 362
BsgI GTGCAG 2 cut(s) 336, 1686
Bsh1236I CGCG 1 cut(s) 445
Bsh1285I CGRYCG 2 cut(s) 19, 449
BshFI GGCC 6 cut(s) 271, 448, 611, 1532, 1570, 2122
BshNI GGYRCC 1 cut(s) 151
BsiEI CGRYCG 2 cut(s) 19, 449
BsiHKAI GWGCWC 2 cut(s) 9, 1022
BsiHKCI CYCGRG 3 cut(s) 539, 641, 2736
BsiSI CCGG 1 cut(s) 545
BslFI GGGAC 1 cut(s) 2753
BslI CCNNNNNNNGG 8 cut(s) 251, 284, 362, 363, 1360, 1431, 1902, 2511
BsmAI GTCTC 3 cut(s) 938, 1613, 1856
BsmFI GGGAC 1 cut(s) 2753
BsmI GAATGC 3 cut(s) 178, 1171, 2651
BsnI GGCC 6 cut(s) 271, 448, 611, 1532, 1570, 2122
Bso31I GGTCTC 1 cut(s) 1856
BsoBI CYCGRG 3 cut(s) 539, 641, 2736
Bsp1286I GDGCHC 4 cut(s) 9, 168, 1022, 2079
Bsp1407I TGTACA 1 cut(s) 1428
Bsp143I GATC 4 cut(s) 24, 1417, 1744, 1849
Bsp19I CCATGG 1 cut(s) 2233
BspACI CCGC 2 cut(s) 445, 2649
BspANI GGCC 6 cut(s) 271, 448, 611, 1532, 1570, 2122
BspCNI CTCAG 7 cut(s) 190, 447, 829, 1042, 1924, 2152, 2433
BspFNI CGCG 1 cut(s) 445
BspLI GGNNCC 2 cut(s) 153, 1746
BspMI ACCTGC 2 cut(s) 355, 2157
BspOI GCTAGC 1 cut(s) 1302
BspPI GGATC 4 cut(s) 1412, 1739, 1752, 1844
BspT107I GGYRCC 1 cut(s) 151
BspTNI GGTCTC 1 cut(s) 1856
BsrDI GCAATG 1 cut(s) 1176
BsrFI RCCGGY 1 cut(s) 544
BsrGI TGTACA 1 cut(s) 1428
BssAI RCCGGY 1 cut(s) 544
BssMI GATC 4 cut(s) 24, 1417, 1744, 1849
BssT1I CCWWGG 5 cut(s) 246, 357, 501, 1866, 2233
Bst2UI CCWGG 3 cut(s) 946, 1898, 2343
Bst4CI ACNGT 6 cut(s) 1134, 1355, 1741, 2175, 2354, 2474
Bst6I CTCTTC 2 cut(s) 1578, 2028
BstAUI TGTACA 1 cut(s) 1428
BstC8I GCNNGC 2 cut(s) 1300, 1701
BstDEI CTNAG 9 cut(s) 177, 455, 837, 1050, 1381, 1932, 2054, 2160, 2441
BstDSI CCRYGG 1 cut(s) 2233
BstENI CCTNNNNNAGG 1 cut(s) 1429
BstF5I GGATG 8 cut(s) 256, 433, 955, 1060, 1421, 1738, 1946, 2692
BstFNI CGCG 1 cut(s) 445
BstKTI GATC 4 cut(s) 27, 1420, 1747, 1852
BstMAI GTCTC 3 cut(s) 938, 1613, 1856
BstMBI GATC 4 cut(s) 24, 1417, 1744, 1849
BstMCI CGRYCG 2 cut(s) 19, 449
BstMWI GCNNNNNNNGC 6 cut(s) 359, 451, 1012, 1922, 2128, 2666
BstNI CCWGG 3 cut(s) 946, 1898, 2343
BstPAI GACNNNNGTC 1 cut(s) 2638
BstSCI CCNGG 3 cut(s) 944, 1896, 2341
BstSFI CTRYAG 2 cut(s) 993, 1101
BstSLI GKGCMC 1 cut(s) 168
BstUI CGCG 1 cut(s) 445
BstV2I GAAGAC 2 cut(s) 39, 2291
BstX2I RGATCY 3 cut(s) 1417, 1744, 1849
BstXI CCANNNNNNTGG 1 cut(s) 61
BstYI RGATCY 3 cut(s) 1417, 1744, 1849
BstZI CGGCCG 1 cut(s) 446
Bsu36I CCTNAGG 1 cut(s) 2441
BsuRI GGCC 6 cut(s) 271, 448, 611, 1532, 1570, 2122
BtgI CCRYGG 1 cut(s) 2233
BtgZI GCGATG 1 cut(s) 1647
BtsCI GGATG 8 cut(s) 256, 433, 955, 1060, 1421, 1738, 1946, 2692
BtsI GCAGTG 1 cut(s) 700
BtsIMutI CAGTG 8 cut(s) 279, 700, 1222, 1569, 1737, 2021, 2171, 2433
BveI ACCTGC 2 cut(s) 355, 2157
Cac8I GCNNGC 2 cut(s) 1300, 1701
CaiI CAGNNNCTG 2 cut(s) 1931, 2142
Cfr10I RCCGGY 1 cut(s) 544
Cfr13I GGNCC 1 cut(s) 2121
CseI GACGC 3 cut(s) 728, 1146, 2419
Csp6I GTAC 3 cut(s) 1429, 1966, 2061
CspCI CAANNNNNGTGG 2 cut(s) 2272, 2307
CviAII CATG 7 cut(s) 22, 1395, 1612, 1951, 2234, 2270, 2478
CviQI GTAC 3 cut(s) 1429, 1966, 2061
DdeI CTNAG 9 cut(s) 177, 455, 837, 1050, 1381, 1932, 2054, 2160, 2441
DpnI GATC 4 cut(s) 26, 1419, 1746, 1851
DpnII GATC 4 cut(s) 24, 1417, 1744, 1849
DraI TTTAAA 1 cut(s) 1762
DraIII CACNNNGTG 1 cut(s) 2748
DrdI GACNNNNNNGTC 2 cut(s) 930, 1870
DseDI GACNNNNNNGTC 2 cut(s) 930, 1870
EaeI YGGCCR 2 cut(s) 446, 1530
EagI CGGCCG 1 cut(s) 446
Eam1104I CTCTTC 2 cut(s) 1578, 2028
EarI CTCTTC 2 cut(s) 1578, 2028
Ecl136II GAGCTC 1 cut(s) 7
EclXI CGGCCG 1 cut(s) 446
Eco130I CCWWGG 5 cut(s) 246, 357, 501, 1866, 2233
Eco24I GRGCYC 2 cut(s) 9, 2079
Eco31I GGTCTC 1 cut(s) 1856
Eco52I CGGCCG 1 cut(s) 446
Eco53kI GAGCTC 1 cut(s) 7
Eco57I CTGAAG 2 cut(s) 918, 2447
Eco81I CCTNAGG 1 cut(s) 2441
Eco88I CYCGRG 3 cut(s) 539, 641, 2736
EcoICRI GAGCTC 1 cut(s) 7
EcoNI CCTNNNNNAGG 1 cut(s) 1429
EcoO109I RGGNCCY 1 cut(s) 2121
EcoRII CCWGG 3 cut(s) 944, 1896, 2341
EcoT14I CCWWGG 5 cut(s) 246, 357, 501, 1866, 2233
EcoT38I GRGCYC 2 cut(s) 9, 2079
ErhI CCWWGG 5 cut(s) 246, 357, 501, 1866, 2233
FaeI CATG 7 cut(s) 25, 1398, 1615, 1954, 2237, 2273, 2481
FaqI GGGAC 1 cut(s) 2753
FatI CATG 7 cut(s) 21, 1394, 1611, 1950, 2233, 2269, 2477
FblI GTMKAC 2 cut(s) 343, 2632
FokI GGATG 8 cut(s) 263, 440, 962, 1067, 1408, 1745, 1933, 2679
FriOI GRGCYC 2 cut(s) 9, 2079
FspBI CTAG 8 cut(s) 87, 591, 690, 852, 1065, 1299, 1305, 1490
GsaI CCCAGC 1 cut(s) 366
GsuI CTGGAG 1 cut(s) 1287
HaeIII GGCC 6 cut(s) 271, 448, 611, 1532, 1570, 2122
HapII CCGG 1 cut(s) 545
HgaI GACGC 3 cut(s) 728, 1146, 2419
Hin1II CATG 7 cut(s) 25, 1398, 1615, 1954, 2237, 2273, 2481
HincII GTYRAC 2 cut(s) 2169, 2633
HindII GTYRAC 2 cut(s) 2169, 2633
HindIII AAGCTT 1 cut(s) 109
HpaI GTTAAC 1 cut(s) 2169
HpaII CCGG 1 cut(s) 545
HphI GGTGA 7 cut(s) 41, 559, 579, 629, 728, 1068, 1895
Hpy166II GTNNAC 7 cut(s) 344, 1076, 1792, 2169, 2247, 2350, 2633
Hpy188III TCNNGA 7 cut(s) 935, 1639, 1654, 2000, 2465, 2584, 2738
Hpy8I GTNNAC 7 cut(s) 344, 1076, 1792, 2169, 2247, 2350, 2633
HpyAV CCTTC 6 cut(s) 64, 191, 1573, 1685, 1758, 1828
HpyCH4III ACNGT 6 cut(s) 1134, 1355, 1741, 2175, 2354, 2474
HpyCH4IV ACGT 1 cut(s) 293
HpyF10VI GCNNNNNNNGC 6 cut(s) 359, 451, 1012, 1922, 2128, 2666
HpyF3I CTNAG 9 cut(s) 177, 455, 837, 1050, 1381, 1932, 2054, 2160, 2441
HpySE526I ACGT 1 cut(s) 293
Hsp92II CATG 7 cut(s) 25, 1398, 1615, 1954, 2237, 2273, 2481
KspAI GTTAAC 1 cut(s) 2169
Kzo9I GATC 4 cut(s) 24, 1417, 1744, 1849
LmnI GCTCC 3 cut(s) 4, 505, 1455
LweI GCATC 7 cut(s) 191, 1096, 1219, 1659, 1723, 1827, 1955
MaeI CTAG 8 cut(s) 87, 591, 690, 852, 1065, 1299, 1305, 1490
MaeII ACGT 1 cut(s) 293
MaeIII GTNAC 9 cut(s) 289, 585, 716, 1042, 1465, 1971, 2404, 2431, 2507
MalI GATC 4 cut(s) 26, 1419, 1746, 1851
MboI GATC 4 cut(s) 24, 1417, 1744, 1849
MfeI CAATTG 1 cut(s) 2284
MflI RGATCY 3 cut(s) 1417, 1744, 1849
MhlI GDGCHC 4 cut(s) 9, 168, 1022, 2079
MlsI TGGCCA 1 cut(s) 1532
MluNI TGGCCA 1 cut(s) 1532
MlyI GAGTC 4 cut(s) 1400, 1595, 1880, 2572
MmeI TCCRAC 2 cut(s) 303, 1116
Mox20I TGGCCA 1 cut(s) 1532
MscI TGGCCA 1 cut(s) 1532
MslI CAYNNNNRTG 2 cut(s) 1025, 2331
Msp20I TGGCCA 1 cut(s) 1532
MspI CCGG 1 cut(s) 545
MspR9I CCNGG 3 cut(s) 946, 1898, 2343
MunI CAATTG 1 cut(s) 2284
Mva1269I GAATGC 3 cut(s) 178, 1171, 2651
MvaI CCWGG 3 cut(s) 946, 1898, 2343
MvnI CGCG 1 cut(s) 445
MwoI GCNNNNNNNGC 6 cut(s) 359, 451, 1012, 1922, 2128, 2666
NcoI CCATGG 1 cut(s) 2233
NdeII GATC 4 cut(s) 24, 1417, 1744, 1849
NheI GCTAGC 1 cut(s) 1298
NlaIII CATG 7 cut(s) 25, 1398, 1615, 1954, 2237, 2273, 2481
NlaIV GGNNCC 2 cut(s) 153, 1746
NmeAIII GCCGAG 1 cut(s) 474
NmuCI GTSAC 5 cut(s) 585, 716, 1465, 2404, 2431
OliI CACNNNNGTG 1 cut(s) 1025
PcsI WCGNNNNNNNCGW 1 cut(s) 1635
PctI GAATGC 3 cut(s) 178, 1171, 2651
PleI GAGTC 4 cut(s) 1399, 1594, 1879, 2572
PpsI GAGTC 4 cut(s) 1399, 1594, 1879, 2572
PshAI GACNNNNGTC 1 cut(s) 2638
PshBI ATTAAT 1 cut(s) 1479
PsiI TTATAA 1 cut(s) 1292
Psp124BI GAGCTC 1 cut(s) 9
Psp6I CCWGG 3 cut(s) 944, 1896, 2341
PspFI CCCAGC 1 cut(s) 362
PspGI CCWGG 3 cut(s) 944, 1896, 2341
PspN4I GGNNCC 2 cut(s) 153, 1746
PspPI GGNCC 1 cut(s) 2121
PstNI CAGNNNCTG 2 cut(s) 1931, 2142
PsuI RGATCY 3 cut(s) 1417, 1744, 1849
RsaI GTAC 3 cut(s) 1430, 1967, 2062
RsaNI GTAC 3 cut(s) 1429, 1966, 2061
RseI CAYNNNNRTG 2 cut(s) 1025, 2331
SacI GAGCTC 1 cut(s) 9
SalI GTCGAC 1 cut(s) 2631
Sau3AI GATC 4 cut(s) 24, 1417, 1744, 1849
Sau96I GGNCC 1 cut(s) 2121
SchI GAGTC 4 cut(s) 1400, 1595, 1880, 2572
ScrFI CCNGG 3 cut(s) 946, 1898, 2343
SduI GDGCHC 4 cut(s) 9, 168, 1022, 2079
SfaNI GCATC 7 cut(s) 191, 1096, 1219, 1659, 1723, 1827, 1955
SfcI CTRYAG 2 cut(s) 993, 1101
SmiMI CAYNNNNRTG 2 cut(s) 1025, 2331
SmlI CTYRAG 4 cut(s) 8, 1190, 2582, 2683
SmoI CTYRAG 4 cut(s) 8, 1190, 2582, 2683
SsiI CCGC 2 cut(s) 445, 2649
SspMI CTAG 8 cut(s) 87, 591, 690, 852, 1065, 1299, 1305, 1490
SstI GAGCTC 1 cut(s) 9
StyD4I CCNGG 3 cut(s) 944, 1896, 2341
StyI CCWWGG 5 cut(s) 246, 357, 501, 1866, 2233
TaaI ACNGT 6 cut(s) 1134, 1355, 1741, 2175, 2354, 2474
TaiI ACGT 1 cut(s) 296
TaqI TCGA 4 cut(s) 804, 936, 1689, 2632
TaqII GACCGA 2 cut(s) 5, 1971
TatI WGTACW 2 cut(s) 1428, 1965
TauI GCSGC 1 cut(s) 448
TscAI CASTG 8 cut(s) 279, 700, 1222, 1569, 1744, 2028, 2178, 2440
TseFI GTSAC 5 cut(s) 585, 716, 1465, 2404, 2431
Tsp45I GTSAC 5 cut(s) 585, 716, 1465, 2404, 2431
TspGWI ACGGA 2 cut(s) 1842, 2628
TspRI CASTG 8 cut(s) 279, 700, 1222, 1569, 1744, 2028, 2178, 2440
VspI ATTAAT 1 cut(s) 1479
XagI CCTNNNNNAGG 1 cut(s) 1429
XapI RAATTY 5 cut(s) 469, 1094, 1376, 2213, 2588
XmiI GTMKAC 2 cut(s) 343, 2632
XspI CTAG 8 cut(s) 87, 591, 690, 852, 1065, 1299, 1305, 1490
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.