Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr14

Orthogroup ID

OG0010383

Physical Location & Seq

Genomic Coordinates Reverse (-)

15073679 .. 15075023

Gene Structure 1345 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD14G1098600.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 537 bp

ATGGCTGAAAATCTGGTATCTTTCCGCTCGTTAATTGGATTTCTGCCATACCGTAATCTTTCTTCCAAGTGGAAGTTCTTAGCTTTTGAGTCATGGTTGAGACAGAAGGGCTTAGACCCGTCATTGTACAGACGAAATCTAGGAATTATTGATACGAATACTCTTCCTAATCCAAGCCTAGAAGATCCTGATGCAGACGCGAAAAACGAGACAATAGTTTCACCAGATATGAGATTGGAAGATCTTCTTAGAATTTATGACCAAGAGAAAATCAAATTCTTATCATCATTTGTTGGCCAGAAAATCAGAGTACAATTGGTGTTGACCAACAGAAAGTTTGGGAAGCTTGTATTTTCAGTGAGGCCAAAAGAGAAGGAAGAGTCGGTTGAGAGAAAAAGAAGTCTTATGGCAAAACTTCAAGTTGGAGATGTTGTGAAATGCTGCATCAAGAAAATCACTTATTTTGGTGTTTTTGTTGAGGTAACTGAAAGGTTTGCCACTCATTGTCTTGGAAGTGAAAAAAAAACTTTACTCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Ribosomal_L21p S1

Protein Analysis

179

Amino Acids

20.59

Weight (kDa)

9.54

Isoelectric Point (pI)

36.25

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0010383)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G12800
fragaria_vesca	FvH4_5g01950 FvH4_5g01950 FvH4_5g01950 FvH4_5g01950
malus_domestica	MD06G1077900.v1.1 MD14G1098600.v1.1 MD14G1098700.v1.1
prunus_persica	Prupe.5G095700_v2.0.a1 Prupe.5G095700_v2.0.a1
pyrus_communis	pycom06g07570
rosa_chinensis	RchiOBHm_Chr7g0198431
rosa_laevigata	RLG00000003868
rosa_multiflora	Rmu_sc0001250.1_g000003
rosa_roxburghii	Rroxscaffold_3G00257700
rosa_rugosa	Rorug07G0047900
rosa_samantha	Rh7AG171700 Rh7BG174500 Rh7CG181100 Rh7DG173600
rosa_wichuraiana	Rw7G014990

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	27
AccII	CGCG	1 cut(s)	200
AciI	CCGC	1 cut(s)	25
AclWI	GGATC	1 cut(s)	179
AcoI	YGGCCR	1 cut(s)	295
AcsI	RAATTY	2 cut(s)	252, 275
AfaI	GTAC	2 cut(s)	128, 312
AgsI	TTSAA	1 cut(s)	419
AjuI	GAANNNNNNNTTGG	2 cut(s)	59, 91
AluBI	AGCT	2 cut(s)	83, 346
AluI	AGCT	2 cut(s)	83, 346
Alw26I	GTCTC	2 cut(s)	94, 203
AlwI	GGATC	1 cut(s)	179
AoxI	GGCC	2 cut(s)	295, 362
ApeKI	GCWGC	1 cut(s)	441
ApoI	RAATTY	2 cut(s)	252, 275
Asp700I	GAANNNNTTC	1 cut(s)	243
AsuHPI	GGTGA	1 cut(s)	213
BalI	TGGCCA	1 cut(s)	297
BarI	GAAGNNNNNNTAC	2 cut(s)	46, 78
BbvI	GCAGC	1 cut(s)	428
BcoDI	GTCTC	2 cut(s)	94, 203
BfaI	CTAG	3 cut(s)	140, 179, 535
BglII	AGATCT	1 cut(s)	241
BisI	GCNGC	1 cut(s)	442
BlsI	GCNGC	1 cut(s)	443
BmsI	GCATC	2 cut(s)	181, 453
BsaXI	ACNNNNNCTCC	2 cut(s)	417, 447
BseXI	GCAGC	1 cut(s)	428
Bsh1236I	CGCG	1 cut(s)	200
BshFI	GGCC	2 cut(s)	297, 364
BsmAI	GTCTC	2 cut(s)	94, 203
BsnI	GGCC	2 cut(s)	297, 364
Bsp1407I	TGTACA	1 cut(s)	126
Bsp143I	GATC	2 cut(s)	184, 241
BspACI	CCGC	1 cut(s)	25
BspANI	GGCC	2 cut(s)	297, 364
BspFNI	CGCG	1 cut(s)	200
BspPI	GGATC	1 cut(s)	179
BsrBI	CCGCTC	1 cut(s)	27
BsrGI	TGTACA	1 cut(s)	126
BssMI	GATC	2 cut(s)	184, 241
Bst4CI	ACNGT	1 cut(s)	53
Bst6I	CTCTTC	2 cut(s)	168, 372
BstAUI	TGTACA	1 cut(s)	126
BstDEI	CTNAG	3 cut(s)	79, 112, 248
BstFNI	CGCG	1 cut(s)	200
BstKTI	GATC	2 cut(s)	187, 244
BstMAI	GTCTC	2 cut(s)	94, 203
BstMBI	GATC	2 cut(s)	184, 241
BstUI	CGCG	1 cut(s)	200
BstV1I	GCAGC	1 cut(s)	428
BstX2I	RGATCY	2 cut(s)	184, 241
BstYI	RGATCY	2 cut(s)	184, 241
BsuRI	GGCC	2 cut(s)	297, 364
BtsIMutI	CAGTG	1 cut(s)	363
CseI	GACGC	1 cut(s)	206
Csp6I	GTAC	2 cut(s)	127, 311
CviAII	CATG	1 cut(s)	93
CviJI	RGCY	7 cut(s)	5, 83, 111, 177, 297, 346, 364
CviKI_1	RGCY	7 cut(s)	5, 83, 111, 177, 297, 346, 364
CviQI	GTAC	2 cut(s)	127, 311
DdeI	CTNAG	3 cut(s)	79, 112, 248
DpnI	GATC	2 cut(s)	186, 243
DpnII	GATC	2 cut(s)	184, 241
EaeI	YGGCCR	1 cut(s)	295
Eam1104I	CTCTTC	2 cut(s)	168, 372
EarI	CTCTTC	2 cut(s)	168, 372
FaeI	CATG	1 cut(s)	96
FaiI	YATR	5 cut(s)	49, 94, 230, 258, 407
FalI	AAGNNNNNCTT	2 cut(s)	231, 263
FatI	CATG	1 cut(s)	92
Fnu4HI	GCNGC	1 cut(s)	442
Fsp4HI	GCNGC	1 cut(s)	442
FspBI	CTAG	3 cut(s)	140, 179, 535
GluI	GCNGC	1 cut(s)	442
HaeIII	GGCC	2 cut(s)	297, 364
HgaI	GACGC	1 cut(s)	206
Hin1II	CATG	1 cut(s)	96
HincII	GTYRAC	1 cut(s)	324
HindII	GTYRAC	1 cut(s)	324
HindIII	AAGCTT	1 cut(s)	344
HinfI	GANTC	2 cut(s)	89, 380
HphI	GGTGA	1 cut(s)	213
Hpy166II	GTNNAC	1 cut(s)	324
Hpy188I	TCNGA	1 cut(s)	308
Hpy188III	TCNNGA	2 cut(s)	188, 448
Hpy8I	GTNNAC	1 cut(s)	324
HpyAV	CCTTC	2 cut(s)	100, 367
HpyCH4III	ACNGT	1 cut(s)	53
HpyCH4V	TGCA	2 cut(s)	194, 444
HpyF3I	CTNAG	3 cut(s)	79, 112, 248
Hsp92II	CATG	1 cut(s)	96
Kzo9I	GATC	2 cut(s)	184, 241
LpnPI	CCDG	3 cut(s)	201, 237, 311
Lsp1109I	GCAGC	1 cut(s)	428
LweI	GCATC	2 cut(s)	181, 453
MaeI	CTAG	3 cut(s)	140, 179, 535
MaeIII	GTNAC	1 cut(s)	481
MalI	GATC	2 cut(s)	186, 243
MbiI	CCGCTC	1 cut(s)	27
MboI	GATC	2 cut(s)	184, 241
MboII	GAAGA	6 cut(s)	54, 155, 194, 236, 251, 389
MfeI	CAATTG	1 cut(s)	314
MflI	RGATCY	2 cut(s)	184, 241
MlsI	TGGCCA	1 cut(s)	297
MluCI	AATT	5 cut(s)	33, 144, 252, 275, 314
MluNI	TGGCCA	1 cut(s)	297
MlyI	GAGTC	2 cut(s)	98, 389
MmeI	TCCRAC	1 cut(s)	403
MnlI	CCTC	2 cut(s)	354, 472
Mox20I	TGGCCA	1 cut(s)	297
MroXI	GAANNNNTTC	1 cut(s)	243
MscI	TGGCCA	1 cut(s)	297
MseI	TTAA	1 cut(s)	32
Msp20I	TGGCCA	1 cut(s)	297
MunI	CAATTG	1 cut(s)	314
MvnI	CGCG	1 cut(s)	200
NdeII	GATC	2 cut(s)	184, 241
NlaIII	CATG	1 cut(s)	96
PcsI	WCGNNNNNNNCGW	1 cut(s)	204
PdmI	GAANNNNTTC	1 cut(s)	243
PkrI	GCNGC	1 cut(s)	443
PleI	GAGTC	2 cut(s)	97, 388
PpsI	GAGTC	2 cut(s)	97, 388
PsuI	RGATCY	2 cut(s)	184, 241
RsaI	GTAC	2 cut(s)	128, 312
RsaNI	GTAC	2 cut(s)	127, 311
SaqAI	TTAA	1 cut(s)	32
SatI	GCNGC	1 cut(s)	442
Sau3AI	GATC	2 cut(s)	184, 241
SchI	GAGTC	2 cut(s)	98, 389
SetI	ASST	4 cut(s)	85, 348, 483, 494
SfaNI	GCATC	2 cut(s)	181, 453
Sse9I	AATT	5 cut(s)	33, 144, 252, 275, 314
SsiI	CCGC	1 cut(s)	25
SspMI	CTAG	3 cut(s)	140, 179, 535
TaaI	ACNGT	1 cut(s)	53
TasI	AATT	5 cut(s)	33, 144, 252, 275, 314
TatI	WGTACW	2 cut(s)	126, 310
Tru1I	TTAA	1 cut(s)	32
Tru9I	TTAA	1 cut(s)	32
TscAI	CASTG	1 cut(s)	363
TseI	GCWGC	1 cut(s)	441
TspRI	CASTG	1 cut(s)	363
XapI	RAATTY	2 cut(s)	252, 275
XmnI	GAANNNNTTC	1 cut(s)	243
XspI	CTAG	3 cut(s)	140, 179, 535

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.