Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr14

Orthogroup ID

OG0010383

Physical Location & Seq

Genomic Coordinates Reverse (-)

15081864 .. 15083402

Gene Structure 1539 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD14G1098700.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1119 bp

ATGGACAGTTTCTCTCTTTCCCTCGCCACCAACACCACCCCTTTCTTTCTCACTCACACTTGTCTTCTTCCTTCACTTTCTTCCACAACCCAAATTTTCCCTTCGAGGAACAAGAAATGCGTTGTTTTTAGTTCTAGGGAAGAACCGAAGCTTGACCCTTTGAACCAAATGGAGCTCAAGTTCGGCCGCTTGATTGGGGAGGACCCCAAACTTACGATTGCCAAGATATTGGGTAGAAAAGCAAACCCAGAAGCTAGTTATATGGATATTGAGAAAAGTTTTTACAAGAACAAGGGTAAAATTGTTGAGATAAAGGAGGTACCTTTTGATGGGGCCAAGGAAGTTCGGACCATCGAAGAAAAGGAGTTAACTTTTGATGGGCCCAAGGAAGTTCAGTCATCTAGGTCATTGAATGGTTTGAACTTGGTTCGACCGGTGCCAAAGAAAGGAGTTAAATTTGAAGTGGATGATAAGCCAAGAGTGTCGCAAATTAAGAACCTGAGACGCCCAGTTTCCAAGCCTGTGGAACCTACTAAAGATGTTCTTTCGAGGTTGAGAATTAAACCAAATTTGTCGTTGAAGATGAGGGTTGAGCAACCAAAGGAGAAATTTAGTGATATGATGTTGTTGAGAAAGCCCCAACCGGTGAGTGTTGATGAAAGTAGCGAAAATAAACAAGAGCAATCTAGTGATGCAAATAAGAATATCATTGGTAATGCAGAAATAGAGAAGTGGAGGGAAGAAGAAAATGATAAAGTTCATGGTTTTACGCTATTAGAAAAACCCAAAGCAAATTGCGTCAAAACAAAGAGTGAAGACGATAGTGAGCACTTTGAGAATGGCGAATCTAGTATGGCTGATGTTGTTGAAGATAATGATAGCTCCAAGGATTTGTCCGAATTTACGGCATCTAACACAATACGTAACAATCTTGAAGAATCCAAAGGTGGTCCTGGTCAAAAGGATGATTCCCTTATAAGATTGCAGCCATATGAGCAGAGCAATATGGAGTCCGGTGATGAGGTATCTGCTTCGAGTGAACTATCTGGTACAAACTTACCTGTTTCTGACGTTGACTTGTCGATAGACACTGCAATACAAGGAAAACCAAAAAGGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Ribosomal_L21p S1

Protein Analysis

373

Amino Acids

41.75

Weight (kDa)

5.63

Isoelectric Point (pI)

55.0

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0010383)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G12800
fragaria_vesca	FvH4_5g01950 FvH4_5g01950 FvH4_5g01950 FvH4_5g01950
malus_domestica	MD06G1077900.v1.1 MD14G1098600.v1.1 MD14G1098700.v1.1
prunus_persica	Prupe.5G095700_v2.0.a1 Prupe.5G095700_v2.0.a1
pyrus_communis	pycom06g07570
rosa_chinensis	RchiOBHm_Chr7g0198431
rosa_laevigata	RLG00000003868
rosa_multiflora	Rmu_sc0001250.1_g000003
rosa_roxburghii	Rroxscaffold_3G00257700
rosa_rugosa	Rorug07G0047900
rosa_samantha	Rh7AG171700 Rh7BG174500 Rh7CG181100 Rh7DG173600
rosa_wichuraiana	Rw7G014990

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	977
Acc65I	GGTACC	1 cut(s)	319
AccB1I	GGYRCC	2 cut(s)	319, 436
AciI	CCGC	1 cut(s)	187
AcoI	YGGCCR	1 cut(s)	184
AcsI	RAATTY	5 cut(s)	93, 455, 568, 608, 899
AcyI	GRCGYC	1 cut(s)	505
AfaI	GTAC	2 cut(s)	321, 1051
AfiI	CCNNNNNNNGG	2 cut(s)	329, 446
AgeI	ACCGGT	2 cut(s)	433, 643
AgsI	TTSAA	7 cut(s)	163, 412, 421, 461, 580, 869, 935
AjnI	CCWGG	1 cut(s)	952
AloI	GAACNNNNNNTCC	2 cut(s)	164, 196
AluBI	AGCT	4 cut(s)	151, 175, 254, 882
AluI	AGCT	4 cut(s)	151, 175, 254, 882
Alw21I	GWGCWC	2 cut(s)	177, 831
Alw26I	GTCTC	1 cut(s)	496
AoxI	GGCC	3 cut(s)	184, 333, 380
ApaI	GGGCCC	1 cut(s)	384
ApeKI	GCWGC	1 cut(s)	985
ApoI	RAATTY	5 cut(s)	93, 455, 568, 608, 899
AsiGI	ACCGGT	2 cut(s)	433, 643
Asp718I	GGTACC	1 cut(s)	319
AspS9I	GGNCC	6 cut(s)	202, 333, 348, 380, 381, 950
AsuHPI	GGTGA	2 cut(s)	658, 1028
AvaII	GGWCC	3 cut(s)	202, 348, 950
BaeGI	GKGCMC	1 cut(s)	384
BanI	GGYRCC	2 cut(s)	319, 436
BanII	GRGCYC	2 cut(s)	177, 384
BbsI	GAAGAC	2 cut(s)	56, 822
Bbv12I	GWGCWC	2 cut(s)	177, 831
BbvI	GCAGC	1 cut(s)	997
BccI	CCATC	3 cut(s)	323, 359, 371
BceAI	ACGGC	1 cut(s)	921
BciT130I	CCWGG	1 cut(s)	954
BcoDI	GTCTC	1 cut(s)	496
BfaI	CTAG	5 cut(s)	135, 255, 402, 687, 849
BisI	GCNGC	2 cut(s)	187, 986
BlsI	GCNGC	2 cut(s)	188, 987
Bme1390I	CCNGG	1 cut(s)	954
Bme18I	GGWCC	3 cut(s)	202, 348, 950
BmgT120I	GGNCC	6 cut(s)	202, 333, 348, 380, 381, 950
BmiI	GGNNCC	6 cut(s)	204, 321, 334, 382, 438, 528
BmrFI	CCNGG	1 cut(s)	954
BmrI	ACTGGG	1 cut(s)	503
BmsI	GCATC	2 cut(s)	682, 917
BmuI	ACTGGG	1 cut(s)	503
BpiI	GAAGAC	2 cut(s)	56, 822
BpuEI	CTTGAG	1 cut(s)	161
BsaAI	YACGTR	1 cut(s)	923
BsaHI	GRCGYC	1 cut(s)	505
BsaJI	CCNNGG	3 cut(s)	336, 384, 885
BsaWI	WCCGGW	3 cut(s)	433, 643, 1013
BsaXI	ACNNNNNCTCC	2 cut(s)	164, 194
Bsc4I	CCNNNNNNNGG	2 cut(s)	329, 446
Bse118I	RCCGGY	2 cut(s)	433, 643
Bse1I	ACTGG	1 cut(s)	509
BseBI	CCWGG	1 cut(s)	954
BseDI	CCNNGG	3 cut(s)	336, 384, 885
BseGI	GGATG	2 cut(s)	472, 970
BseLI	CCNNNNNNNGG	2 cut(s)	329, 446
BseMII	CTCAG	1 cut(s)	491
BseNI	ACTGG	1 cut(s)	509
BseSI	GKGCMC	1 cut(s)	384
BseX3I	CGGCCG	1 cut(s)	184
BseXI	GCAGC	1 cut(s)	997
Bsh1285I	CGRYCG	2 cut(s)	187, 434
BshFI	GGCC	3 cut(s)	186, 335, 382
BshNI	GGYRCC	2 cut(s)	319, 436
BshTI	ACCGGT	2 cut(s)	433, 643
BsiEI	CGRYCG	2 cut(s)	187, 434
BsiHKAI	GWGCWC	2 cut(s)	177, 831
BsiSI	CCGG	3 cut(s)	434, 644, 1014
BslI	CCNNNNNNNGG	2 cut(s)	329, 446
BsmAI	GTCTC	1 cut(s)	496
BsmBI	CGTCTC	1 cut(s)	496
BsnI	GGCC	3 cut(s)	186, 335, 382
Bsp120I	GGGCCC	1 cut(s)	380
Bsp1286I	GDGCHC	3 cut(s)	177, 384, 831
BspACI	CCGC	1 cut(s)	187
BspANI	GGCC	3 cut(s)	186, 335, 382
BspCNI	CTCAG	1 cut(s)	492
BspLI	GGNNCC	6 cut(s)	204, 321, 334, 382, 438, 528
BspT107I	GGYRCC	2 cut(s)	319, 436
BsrFI	RCCGGY	2 cut(s)	433, 643
BsrI	ACTGG	1 cut(s)	509
BssAI	RCCGGY	2 cut(s)	433, 643
BssECI	CCNNGG	3 cut(s)	336, 384, 885
BssNI	GRCGYC	1 cut(s)	505
BssT1I	CCWWGG	3 cut(s)	336, 384, 885
Bst2UI	CCWGG	1 cut(s)	954
Bst4CI	ACNGT	1 cut(s)	8
BstACI	GRCGYC	1 cut(s)	505
BstBAI	YACGTR	1 cut(s)	923
BstDEI	CTNAG	1 cut(s)	500
BstF5I	GGATG	2 cut(s)	472, 970
BstMAI	GTCTC	1 cut(s)	496
BstMCI	CGRYCG	2 cut(s)	187, 434
BstMWI	GCNNNNNNNGC	1 cut(s)	994
BstNI	CCWGG	1 cut(s)	954
BstSCI	CCNGG	1 cut(s)	952
BstSLI	GKGCMC	1 cut(s)	384
BstSNI	TACGTA	1 cut(s)	923
BstV1I	GCAGC	1 cut(s)	997
BstV2I	GAAGAC	2 cut(s)	56, 822
BstXI	CCANNNNNNTGG	2 cut(s)	229, 523
BstZI	CGGCCG	1 cut(s)	184
BsuRI	GGCC	3 cut(s)	186, 335, 382
BtsCI	GGATG	2 cut(s)	472, 970
BtsI	GCAGTG	1 cut(s)	1089
BtsIMutI	CAGTG	1 cut(s)	1089
Cfr10I	RCCGGY	2 cut(s)	433, 643
Cfr13I	GGNCC	6 cut(s)	202, 333, 348, 380, 381, 950
CseI	GACGC	2 cut(s)	513, 787
Csp6I	GTAC	2 cut(s)	320, 1050
CspAI	ACCGGT	2 cut(s)	433, 643
CviAII	CATG	1 cut(s)	761
CviQI	GTAC	2 cut(s)	320, 1050
DdeI	CTNAG	1 cut(s)	500
EaeI	YGGCCR	1 cut(s)	184
EagI	CGGCCG	1 cut(s)	184
Ecl136II	GAGCTC	1 cut(s)	175
EclXI	CGGCCG	1 cut(s)	184
Eco105I	TACGTA	1 cut(s)	923
Eco130I	CCWWGG	3 cut(s)	336, 384, 885
Eco24I	GRGCYC	2 cut(s)	177, 384
Eco47I	GGWCC	3 cut(s)	202, 348, 950
Eco52I	CGGCCG	1 cut(s)	184
Eco53kI	GAGCTC	1 cut(s)	175
EcoICRI	GAGCTC	1 cut(s)	175
EcoO109I	RGGNCCY	1 cut(s)	202
EcoRII	CCWGG	1 cut(s)	952
EcoT14I	CCWWGG	3 cut(s)	336, 384, 885
EcoT38I	GRGCYC	2 cut(s)	177, 384
ErhI	CCWWGG	3 cut(s)	336, 384, 885
Esp3I	CGTCTC	1 cut(s)	496
FaeI	CATG	1 cut(s)	764
FaiI	YATR	9 cut(s)	261, 263, 620, 762, 854, 977, 991, 993, 1007
FalI	AAGNNNNNCTT	2 cut(s)	528, 560
FatI	CATG	1 cut(s)	760
FauNDI	CATATG	1 cut(s)	991
Fnu4HI	GCNGC	2 cut(s)	187, 986
FokI	GGATG	2 cut(s)	479, 977
FriOI	GRGCYC	2 cut(s)	177, 384
Fsp4HI	GCNGC	2 cut(s)	187, 986
FspBI	CTAG	5 cut(s)	135, 255, 402, 687, 849
GluI	GCNGC	2 cut(s)	187, 986
HaeIII	GGCC	3 cut(s)	186, 335, 382
HapII	CCGG	3 cut(s)	434, 644, 1014
HgaI	GACGC	2 cut(s)	513, 787
Hin1I	GRCGYC	1 cut(s)	505
Hin1II	CATG	1 cut(s)	764
HincII	GTYRAC	2 cut(s)	369, 1075
HindII	GTYRAC	2 cut(s)	369, 1075
HindIII	AAGCTT	1 cut(s)	149
HinfI	GANTC	4 cut(s)	845, 938, 968, 1010
HpaI	GTTAAC	1 cut(s)	369
HpaII	CCGG	3 cut(s)	434, 644, 1014
HphI	GGTGA	2 cut(s)	658, 1028
Hpy166II	GTNNAC	3 cut(s)	369, 1040, 1075
Hpy188I	TCNGA	3 cut(s)	348, 898, 1069
Hpy188III	TCNNGA	1 cut(s)	932
Hpy8I	GTNNAC	3 cut(s)	369, 1040, 1075
HpyAV	CCTTC	2 cut(s)	81, 111
HpyCH4III	ACNGT	1 cut(s)	8
HpyCH4IV	ACGT	2 cut(s)	922, 1071
HpyCH4V	TGCA	4 cut(s)	695, 719, 985, 1094
HpyF10VI	GCNNNNNNNGC	1 cut(s)	994
HpyF3I	CTNAG	1 cut(s)	500
HpySE526I	ACGT	2 cut(s)	922, 1071
Hsp92I	GRCGYC	1 cut(s)	505
Hsp92II	CATG	1 cut(s)	764
KpnI	GGTACC	1 cut(s)	323
KspAI	GTTAAC	1 cut(s)	369
LmnI	GCTCC	2 cut(s)	172, 887
Lsp1109I	GCAGC	1 cut(s)	997
LweI	GCATC	2 cut(s)	682, 917
MaeI	CTAG	5 cut(s)	135, 255, 402, 687, 849
MaeII	ACGT	2 cut(s)	922, 1071
MaeIII	GTNAC	1 cut(s)	923
MhlI	GDGCHC	3 cut(s)	177, 384, 831
MluCI	AATT	9 cut(s)	93, 300, 455, 489, 558, 568, 608, 793, 899
MlyI	GAGTC	1 cut(s)	1019
MnlI	CCTC	8 cut(s)	32, 99, 193, 310, 543, 579, 729, 1015
MseI	TTAA	4 cut(s)	368, 453, 492, 561
MspI	CCGG	3 cut(s)	434, 644, 1014
MspR9I	CCNGG	1 cut(s)	954
MvaI	CCWGG	1 cut(s)	954
MwoI	GCNNNNNNNGC	1 cut(s)	994
NdeI	CATATG	1 cut(s)	991
NlaIII	CATG	1 cut(s)	764
NlaIV	GGNNCC	6 cut(s)	204, 321, 334, 382, 438, 528
PfeI	GAWTC	3 cut(s)	845, 938, 968
PinAI	ACCGGT	2 cut(s)	433, 643
PkrI	GCNGC	2 cut(s)	188, 987
PleI	GAGTC	1 cut(s)	1018
PpsI	GAGTC	1 cut(s)	1018
Ppu21I	YACGTR	1 cut(s)	923
PpuMI	RGGWCCY	1 cut(s)	202
PsiI	TTATAA	1 cut(s)	977
Psp124BI	GAGCTC	1 cut(s)	177
Psp5II	RGGWCCY	1 cut(s)	202
Psp6I	CCWGG	1 cut(s)	952
PspGI	CCWGG	1 cut(s)	952
PspN4I	GGNNCC	6 cut(s)	204, 321, 334, 382, 438, 528
PspOMI	GGGCCC	1 cut(s)	380
PspPI	GGNCC	6 cut(s)	202, 333, 348, 380, 381, 950
PspPPI	RGGWCCY	1 cut(s)	202
RsaI	GTAC	2 cut(s)	321, 1051
RsaNI	GTAC	2 cut(s)	320, 1050
SacI	GAGCTC	1 cut(s)	177
SaqAI	TTAA	4 cut(s)	368, 453, 492, 561
SatI	GCNGC	2 cut(s)	187, 986
Sau96I	GGNCC	6 cut(s)	202, 333, 348, 380, 381, 950
SchI	GAGTC	1 cut(s)	1019
ScrFI	CCNGG	1 cut(s)	954
SduI	GDGCHC	3 cut(s)	177, 384, 831
SfaNI	GCATC	2 cut(s)	682, 917
SinI	GGWCC	3 cut(s)	202, 348, 950
SmlI	CTYRAG	1 cut(s)	176
SmoI	CTYRAG	1 cut(s)	176
SnaBI	TACGTA	1 cut(s)	923
Sse9I	AATT	9 cut(s)	93, 300, 455, 489, 558, 568, 608, 793, 899
SsiI	CCGC	1 cut(s)	187
SspMI	CTAG	5 cut(s)	135, 255, 402, 687, 849
SstI	GAGCTC	1 cut(s)	177
StyD4I	CCNGG	1 cut(s)	952
StyI	CCWWGG	3 cut(s)	336, 384, 885
TaaI	ACNGT	1 cut(s)	8
TaiI	ACGT	2 cut(s)	925, 1074
TaqI	TCGA	6 cut(s)	104, 354, 430, 548, 1034, 1082
TasI	AATT	9 cut(s)	93, 300, 455, 489, 558, 568, 608, 793, 899
TauI	GCSGC	1 cut(s)	189
TfiI	GAWTC	3 cut(s)	845, 938, 968
Tru1I	TTAA	4 cut(s)	368, 453, 492, 561
Tru9I	TTAA	4 cut(s)	368, 453, 492, 561
TscAI	CASTG	1 cut(s)	1096
TseI	GCWGC	1 cut(s)	985
TspDTI	ATGAA	2 cut(s)	672, 749
TspRI	CASTG	1 cut(s)	1096
VpaK11BI	GGWCC	3 cut(s)	202, 348, 950
XapI	RAATTY	5 cut(s)	93, 455, 568, 608, 899
XspI	CTAG	5 cut(s)	135, 255, 402, 687, 849

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.