Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb5

Orthogroup ID

OG0011754

Physical Location & Seq

Genomic Coordinates Forward (+)

3404783 .. 3408745

Gene Structure 3963 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_5g05740.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1476 bp

ATGAAAGGAGCTTATTCAGTTGTTCTTGTTGGTTCTGCTCTGTGGACAAAAGAGAGGAATATTGAAGCAGAGCCATCTTCTTCATCATCTTCTTGTGCAATTCAGCACACAACAGGACAAGACCAATGCTTACAAGCACATAGTGTTGAGACATTACAACCAACTACTCCACTCATCAAACATTCCTCTAAACTGGTTACTCATACTTGCCACACCACCCCTTTCTCATTCACATCCATGCTTCTTGTTCTCTTTCTTCTTGTTGCTTTTGCTCCTGGACTACTCTCATCCCTCCCCATTGCCTCGGAATCCGGGCACCGTCCACCGGCCAATCAGACATTCCGGCCCGGTGGGGAAGAGGTGCAGAACTTGAAGAGGGTCAACTCTTATTTAAGCAAGATCAACAAGCCTGCAGTCAAGACTATTCAGAGTCCTGATGGTGATGTGATAGACTGTGTTTTAAGCCATCTCCAACCAGCTTTTGACCATCCTGAGCTTAAAGGCCAGAAACCATTGGATCTACCAGAGAAGCCTAAATCCCATAACAGCACAGATACAGTGGAAGAGACTTATCAGCTGTGGTCGGAATCCGGTGAGGCATGCCCGGAGGGAACTGTTCCGATTCGGAGGACCACAGAGAAAGACATATTGAGAGCAAGTTCGGTCCAAAGATTTGGAAGAAAATTACCAAGAAGACATGTGAGGAGGGACTCATCAGGCAATGGTCATGAGCATGCAGTTGTTTTTGTAAATGGAGACCAGTACTATGGAGCAAAGGCCAGTATCAATGTGTGGGCACCAAGAGTGACTGATCAATATGAATTTAGCTTGTCACAGATTTGGGTGATATCTGGTACATTTGGTCATGACTTAAATACCATTGAAGCTGGTTGGCAGGTCAGCCCAGAGCTATATGGAGACAACTACCCAAGATTCTTTACATATTGGACATCAGATGCATATCAAGCTACTGGATGTTACAACTTGCTCTGCTCTGGCTTTGTCCAAACCAATAATAAGATTGCTATAGGAGCTGCAATATCTCCAAGGTCTTCCTCCAATGGCAGACAATTTGATATTGGCTTAATGGTTTGGAAGGATCCAAAGCATGGACATTGGTGGCTACAATTTGGTAATGGCCTACTAGTTGGGTACTGGCCAGACTTCTTGTTTAGTCACTTGAGAAGTCATGCAAGCATGGTACAATTTGGGGGTGAAATTGTAAATAGTAGATCAAGGGGGTATCACACATCTACACAAATGGGCAGTGGCCAATTTGCAGAAGCAGGTTTTGGAAAAGCATCTTATTTCAGAAATCTGCAAGTGGTGGATTGGGATAATAATCTTCTTCCTCTTAATAACCTTCACCTCACTGCGGATCATCCCAATTGTTATGATATAAGACAAGGAAGAAATAATGCATGGGGGACATACTTTTACTATGGAGGTCCTGGAAGAAATGTTAGGTGTCCATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Neprosin Neprosin_AP

Protein Analysis

492

Amino Acids

54.68

Weight (kDa)

8.03

Isoelectric Point (pI)

43.42

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Neprosin_AP	PF14365	141 - 248	1.7e-38	Neprosin activation peptide
Neprosin	PF03080	273 - 484	1e-84	Neprosin

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0011754)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G50150
fragaria_vesca	FvH4_5g05740
malus_domestica	MD06G1170400.v1.1 MD14G1176000.v1.1
prunus_persica	Prupe.5G170000_v2.0.a1 Prupe.5G170000_v2.0.a1
pyrus_communis	pycom06g15180 pycom14g14710
rosa_chinensis	RchiOBHm_Chr7g0193071
rosa_laevigata	RLG00000004297
rosa_multiflora	Rmu_ssc0000002.1_g000010
rosa_roxburghii	Rroxscaffold_3G00262400
rosa_rugosa	Rorug07G0007400
rosa_samantha	Rh7AG132600 Rh7BG133500 Rh7CG136600 Rh7DG134500
rosa_wichuraiana	Rw0G015850 Rw7G011330

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	2 cut(s)	886, 1277
AccB1I	GGYRCC	2 cut(s)	315, 796
AccB7I	CCANNNNNTGG	1 cut(s)	1109
AciI	CCGC	1 cut(s)	1376
AclWI	GGATC	4 cut(s)	525, 1094, 1107, 1386
AcoI	YGGCCR	3 cut(s)	327, 1157, 1270
AcsI	RAATTY	1 cut(s)	821
AdeI	CACNNNGTG	1 cut(s)	143
AfaI	GTAC	4 cut(s)	764, 856, 1154, 1203
AfiI	CCNNNNNNNGG	3 cut(s)	325, 1109, 1375
AflIII	ACRYGT	1 cut(s)	697
AgsI	TTSAA	3 cut(s)	65, 373, 884
AhlI	ACTAGT	1 cut(s)	1144
AjnI	CCWGG	2 cut(s)	274, 1450
AjuI	GAANNNNNNNTTGG	4 cut(s)	323, 355, 1275, 1307
AluBI	AGCT	9 cut(s)	11, 479, 496, 577, 828, 887, 910, 968, 1034
AluI	AGCT	9 cut(s)	11, 479, 496, 577, 828, 887, 910, 968, 1034
Alw26I	GTCTC	4 cut(s)	143, 560, 750, 912
AlwI	GGATC	4 cut(s)	525, 1094, 1107, 1386
AoxI	GGCC	7 cut(s)	327, 344, 502, 777, 1138, 1157, 1270
ApeKI	GCWGC	1 cut(s)	1034
ApoI	RAATTY	1 cut(s)	821
AspS9I	GGNCC	4 cut(s)	345, 630, 664, 1448
AsuC2I	CCSGG	3 cut(s)	313, 348, 605
AsuHPI	GGTGA	5 cut(s)	452, 605, 856, 1226, 1358
AvaII	GGWCC	3 cut(s)	630, 664, 1448
BaeGI	GKGCMC	2 cut(s)	318, 799
BalI	TGGCCA	2 cut(s)	1159, 1272
BamHI	GGATCC	1 cut(s)	1099
BanI	GGYRCC	2 cut(s)	315, 796
BbsI	GAAGAC	2 cut(s)	700, 1044
BbvI	GCAGC	1 cut(s)	1021
BccI	CCATC	4 cut(s)	82, 431, 474, 495
BciT130I	CCWGG	2 cut(s)	276, 1452
BclI	TGATCA	1 cut(s)	811
BcnI	CCSGG	3 cut(s)	313, 348, 605
BcoDI	GTCTC	4 cut(s)	143, 560, 750, 912
BcuI	ACTAGT	1 cut(s)	1144
BfaI	CTAG	1 cut(s)	1145
BfmI	CTRYAG	2 cut(s)	411, 1026
BfuAI	ACCTGC	2 cut(s)	886, 1277
BisI	GCNGC	1 cut(s)	1035
BlsI	GCNGC	1 cut(s)	1036
BmcAI	AGTACT	1 cut(s)	764
Bme1390I	CCNGG	5 cut(s)	276, 313, 348, 605, 1452
Bme18I	GGWCC	3 cut(s)	630, 664, 1448
BmgT120I	GGNCC	4 cut(s)	345, 630, 664, 1448
BmiI	GGNNCC	3 cut(s)	317, 798, 1101
BmrFI	CCNGG	5 cut(s)	276, 313, 348, 605, 1452
BmsI	GCATC	2 cut(s)	946, 1310
BpiI	GAAGAC	2 cut(s)	700, 1044
Bpu10I	CCTNAGC	1 cut(s)	492
BpuEI	CTTGAG	1 cut(s)	1201
BpuMI	CCSGG	3 cut(s)	313, 348, 605
BsaBI	GATNNNNATC	2 cut(s)	960, 1341
BsaI	GGTCTC	1 cut(s)	750
BsaJI	CCNNGG	2 cut(s)	303, 1046
BsaWI	WCCGGW	1 cut(s)	590
Bsc4I	CCNNNNNNNGG	3 cut(s)	325, 1109, 1375
Bse118I	RCCGGY	1 cut(s)	325
Bse1I	ACTGG	5 cut(s)	198, 760, 780, 976, 1160
Bse3DI	GCAATG	2 cut(s)	297, 727
Bse8I	GATNNNNATC	2 cut(s)	960, 1341
BseBI	CCWGG	2 cut(s)	276, 1452
BseDI	CCNNGG	2 cut(s)	303, 1046
BseGI	GGATG	5 cut(s)	233, 287, 487, 980, 1381
BseJI	GATNNNNATC	2 cut(s)	960, 1341
BseLI	CCNNNNNNNGG	3 cut(s)	325, 1109, 1375
BseMI	GCAATG	2 cut(s)	297, 727
BseMII	CTCAG	1 cut(s)	483
BseNI	ACTGG	5 cut(s)	198, 760, 780, 976, 1160
BseRI	GAGGAG	1 cut(s)	718
BseSI	GKGCMC	2 cut(s)	318, 799
BseXI	GCAGC	1 cut(s)	1021
BsgI	GTGCAG	1 cut(s)	383
BshFI	GGCC	7 cut(s)	329, 346, 504, 779, 1140, 1159, 1272
BshNI	GGYRCC	2 cut(s)	315, 796
BsiSI	CCGG	6 cut(s)	312, 326, 343, 348, 591, 605
BslFI	GGGAC	2 cut(s)	722, 1441
BslI	CCNNNNNNNGG	3 cut(s)	325, 1109, 1375
BsmAI	GTCTC	4 cut(s)	143, 560, 750, 912
BsmFI	GGGAC	2 cut(s)	722, 1441
BsnI	GGCC	7 cut(s)	329, 346, 504, 779, 1140, 1159, 1272
Bso31I	GGTCTC	1 cut(s)	750
Bsp1286I	GDGCHC	2 cut(s)	318, 799
Bsp143I	GATC	6 cut(s)	399, 517, 811, 1099, 1232, 1378
BspACI	CCGC	1 cut(s)	1376
BspANI	GGCC	7 cut(s)	329, 346, 504, 779, 1140, 1159, 1272
BspCNI	CTCAG	1 cut(s)	484
BspHI	TCATGA	2 cut(s)	727, 865
BspLI	GGNNCC	3 cut(s)	317, 798, 1101
BspMAI	CTGCAG	1 cut(s)	415
BspMI	ACCTGC	2 cut(s)	886, 1277
BspPI	GGATC	4 cut(s)	525, 1094, 1107, 1386
BspT107I	GGYRCC	2 cut(s)	315, 796
BspTNI	GGTCTC	1 cut(s)	750
BsrDI	GCAATG	2 cut(s)	297, 727
BsrFI	RCCGGY	1 cut(s)	325
BsrI	ACTGG	5 cut(s)	198, 760, 780, 976, 1160
BssAI	RCCGGY	1 cut(s)	325
BssECI	CCNNGG	2 cut(s)	303, 1046
BssMI	GATC	6 cut(s)	399, 517, 811, 1099, 1232, 1378
BssT1I	CCWWGG	1 cut(s)	1046
Bst2UI	CCWGG	2 cut(s)	276, 1452
Bst4CI	ACNGT	4 cut(s)	320, 455, 559, 616
Bst6I	CTCTTC	3 cut(s)	351, 368, 558
BstC8I	GCNNGC	4 cut(s)	411, 601, 735, 1195
BstDEI	CTNAG	1 cut(s)	492
BstF5I	GGATG	5 cut(s)	233, 287, 487, 980, 1381
BstKTI	GATC	6 cut(s)	402, 520, 814, 1102, 1235, 1381
BstMAI	GTCTC	4 cut(s)	143, 560, 750, 912
BstMBI	GATC	6 cut(s)	399, 517, 811, 1099, 1232, 1378
BstMWI	GCNNNNNNNGC	2 cut(s)	965, 1031
BstNI	CCWGG	2 cut(s)	276, 1452
BstNSI	RCATGY	3 cut(s)	603, 701, 737
BstSCI	CCNGG	5 cut(s)	274, 311, 346, 603, 1450
BstSFI	CTRYAG	2 cut(s)	411, 1026
BstSLI	GKGCMC	2 cut(s)	318, 799
BstV1I	GCAGC	1 cut(s)	1021
BstV2I	GAAGAC	2 cut(s)	700, 1044
BstX2I	RGATCY	2 cut(s)	517, 1099
BstXI	CCANNNNNNTGG	2 cut(s)	674, 767
BstYI	RGATCY	2 cut(s)	517, 1099
BsuRI	GGCC	7 cut(s)	329, 346, 504, 779, 1140, 1159, 1272
BtsCI	GGATG	5 cut(s)	233, 287, 487, 980, 1381
BtsI	GCAGTG	2 cut(s)	1273, 1371
BtsIMutI	CAGTG	3 cut(s)	564, 1273, 1371
BveI	ACCTGC	2 cut(s)	886, 1277
Cac8I	GCNNGC	4 cut(s)	411, 601, 735, 1195
CciI	TCATGA	2 cut(s)	727, 865
Cfr10I	RCCGGY	1 cut(s)	325
Cfr13I	GGNCC	4 cut(s)	345, 630, 664, 1448
Csp6I	GTAC	4 cut(s)	763, 855, 1153, 1202
CviQI	GTAC	4 cut(s)	763, 855, 1153, 1202
DdeI	CTNAG	1 cut(s)	492
DpnI	GATC	6 cut(s)	401, 519, 813, 1101, 1234, 1380
DpnII	GATC	6 cut(s)	399, 517, 811, 1099, 1232, 1378
DraIII	CACNNNGTG	1 cut(s)	143
EaeI	YGGCCR	3 cut(s)	327, 1157, 1270
Eam1104I	CTCTTC	3 cut(s)	351, 368, 558
EarI	CTCTTC	3 cut(s)	351, 368, 558
Eco130I	CCWWGG	1 cut(s)	1046
Eco31I	GGTCTC	1 cut(s)	750
Eco32I	GATATC	1 cut(s)	849
Eco47I	GGWCC	3 cut(s)	630, 664, 1448
EcoO109I	RGGNCCY	1 cut(s)	1448
EcoRII	CCWGG	2 cut(s)	274, 1450
EcoRV	GATATC	1 cut(s)	849
EcoT14I	CCWWGG	1 cut(s)	1046
EcoT22I	ATGCAT	2 cut(s)	961, 1423
ErhI	CCWWGG	1 cut(s)	1046
FaqI	GGGAC	2 cut(s)	722, 1441
FbaI	TGATCA	1 cut(s)	811
Fnu4HI	GCNGC	1 cut(s)	1035
FokI	GGATG	5 cut(s)	220, 274, 474, 987, 1368
Fsp4HI	GCNGC	1 cut(s)	1035
FspBI	CTAG	1 cut(s)	1145
GluI	GCNGC	1 cut(s)	1035
HaeIII	GGCC	7 cut(s)	329, 346, 504, 779, 1140, 1159, 1272
HapII	CCGG	6 cut(s)	312, 326, 343, 348, 591, 605
HincII	GTYRAC	1 cut(s)	382
HindII	GTYRAC	1 cut(s)	382
HinfI	GANTC	6 cut(s)	308, 430, 587, 622, 710, 933
HpaII	CCGG	6 cut(s)	312, 326, 343, 348, 591, 605
HphI	GGTGA	5 cut(s)	452, 605, 856, 1226, 1358
Hpy166II	GTNNAC	3 cut(s)	45, 323, 382
Hpy188I	TCNGA	8 cut(s)	307, 336, 429, 586, 621, 627, 955, 1313
Hpy188III	TCNNGA	5 cut(s)	418, 434, 491, 728, 866
Hpy8I	GTNNAC	3 cut(s)	45, 323, 382
HpyAV	CCTTC	2 cut(s)	1090, 1373
HpyCH4III	ACNGT	4 cut(s)	320, 455, 559, 616
HpyF10VI	GCNNNNNNNGC	2 cut(s)	965, 1031
HpyF3I	CTNAG	1 cut(s)	492
Ksp22I	TGATCA	1 cut(s)	811
Kzo9I	GATC	6 cut(s)	399, 517, 811, 1099, 1232, 1378
LmnI	GCTCC	4 cut(s)	8, 277, 770, 1031
Lsp1109I	GCAGC	1 cut(s)	1021
LweI	GCATC	2 cut(s)	946, 1310
MaeI	CTAG	1 cut(s)	1145
MaeIII	GTNAC	5 cut(s)	196, 805, 831, 977, 1175
MalI	GATC	6 cut(s)	401, 519, 813, 1101, 1234, 1380
MboI	GATC	6 cut(s)	399, 517, 811, 1099, 1232, 1378
MfeI	CAATTG	1 cut(s)	1387
MflI	RGATCY	2 cut(s)	517, 1099
MhlI	GDGCHC	2 cut(s)	318, 799
MlsI	TGGCCA	2 cut(s)	1159, 1272
MluCI	AATT	9 cut(s)	99, 683, 821, 1070, 1127, 1205, 1218, 1274, 1387
MluNI	TGGCCA	2 cut(s)	1159, 1272
MlyI	GAGTC	2 cut(s)	439, 704
MmeI	TCCRAC	2 cut(s)	496, 564
Mox20I	TGGCCA	2 cut(s)	1159, 1272
Mph1103I	ATGCAT	2 cut(s)	961, 1423
MscI	TGGCCA	2 cut(s)	1159, 1272
MseI	TTAA	6 cut(s)	392, 461, 498, 872, 1085, 1356
MslI	CAYNNNNRTG	2 cut(s)	236, 732
Msp20I	TGGCCA	2 cut(s)	1159, 1272
MspA1I	CMGCKG	1 cut(s)	577
MspI	CCGG	6 cut(s)	312, 326, 343, 348, 591, 605
MspR9I	CCNGG	5 cut(s)	276, 313, 348, 605, 1452
MunI	CAATTG	1 cut(s)	1387
MvaI	CCWGG	2 cut(s)	276, 1452
MwoI	GCNNNNNNNGC	2 cut(s)	965, 1031
NciI	CCSGG	3 cut(s)	313, 348, 605
NdeII	GATC	6 cut(s)	399, 517, 811, 1099, 1232, 1378
NlaIV	GGNNCC	3 cut(s)	317, 798, 1101
NmuCI	GTSAC	3 cut(s)	805, 831, 1175
NsiI	ATGCAT	2 cut(s)	961, 1423
NspI	RCATGY	3 cut(s)	603, 701, 737
PaeI	GCATGC	2 cut(s)	603, 737
PagI	TCATGA	2 cut(s)	727, 865
PciI	ACATGT	1 cut(s)	697
PfeI	GAWTC	4 cut(s)	308, 587, 622, 933
PflMI	CCANNNNNTGG	1 cut(s)	1109
PfoI	TCCNGGA	2 cut(s)	274, 1450
PkrI	GCNGC	1 cut(s)	1036
PleI	GAGTC	2 cut(s)	438, 704
PpsI	GAGTC	2 cut(s)	438, 704
PpuMI	RGGWCCY	1 cut(s)	1448
PscI	ACATGT	1 cut(s)	697
Psp5II	RGGWCCY	1 cut(s)	1448
Psp6I	CCWGG	2 cut(s)	274, 1450
PspGI	CCWGG	2 cut(s)	274, 1450
PspN4I	GGNNCC	3 cut(s)	317, 798, 1101
PspPI	GGNCC	4 cut(s)	345, 630, 664, 1448
PspPPI	RGGWCCY	1 cut(s)	1448
PstI	CTGCAG	1 cut(s)	415
PsuI	RGATCY	2 cut(s)	517, 1099
PvuII	CAGCTG	1 cut(s)	577
RsaI	GTAC	4 cut(s)	764, 856, 1154, 1203
RsaNI	GTAC	4 cut(s)	763, 855, 1153, 1202
RseI	CAYNNNNRTG	2 cut(s)	236, 732
SaqAI	TTAA	6 cut(s)	392, 461, 498, 872, 1085, 1356
SatI	GCNGC	1 cut(s)	1035
Sau3AI	GATC	6 cut(s)	399, 517, 811, 1099, 1232, 1378
Sau96I	GGNCC	4 cut(s)	345, 630, 664, 1448
ScaI	AGTACT	1 cut(s)	764
SchI	GAGTC	2 cut(s)	439, 704
ScrFI	CCNGG	5 cut(s)	276, 313, 348, 605, 1452
SduI	GDGCHC	2 cut(s)	318, 799
SfaNI	GCATC	2 cut(s)	946, 1310
SfcI	CTRYAG	2 cut(s)	411, 1026
SinI	GGWCC	3 cut(s)	630, 664, 1448
SmiMI	CAYNNNNRTG	2 cut(s)	236, 732
SmlI	CTYRAG	1 cut(s)	1180
SmoI	CTYRAG	1 cut(s)	1180
SpeI	ACTAGT	1 cut(s)	1144
SphI	GCATGC	2 cut(s)	603, 737
Sse9I	AATT	9 cut(s)	99, 683, 821, 1070, 1127, 1205, 1218, 1274, 1387
SsiI	CCGC	1 cut(s)	1376
SspI	AATATT	1 cut(s)	61
SspMI	CTAG	1 cut(s)	1145
StyD4I	CCNGG	5 cut(s)	274, 311, 346, 603, 1450
StyI	CCWWGG	1 cut(s)	1046
TaaI	ACNGT	4 cut(s)	320, 455, 559, 616
TaqII	GACCGA	1 cut(s)	652
TasI	AATT	9 cut(s)	99, 683, 821, 1070, 1127, 1205, 1218, 1274, 1387
TatI	WGTACW	1 cut(s)	762
TfiI	GAWTC	4 cut(s)	308, 587, 622, 933
Tru1I	TTAA	6 cut(s)	392, 461, 498, 872, 1085, 1356
Tru9I	TTAA	6 cut(s)	392, 461, 498, 872, 1085, 1356
TscAI	CASTG	3 cut(s)	564, 1273, 1378
TseFI	GTSAC	3 cut(s)	805, 831, 1175
TseI	GCWGC	1 cut(s)	1034
Tsp45I	GTSAC	3 cut(s)	805, 831, 1175
TspDTI	ATGAA	3 cut(s)	17, 72, 834
TspRI	CASTG	3 cut(s)	564, 1273, 1378
Van91I	CCANNNNNTGG	1 cut(s)	1109
VpaK11BI	GGWCC	3 cut(s)	630, 664, 1448
XapI	RAATTY	1 cut(s)	821
XceI	RCATGY	3 cut(s)	603, 701, 737
XspI	CTAG	1 cut(s)	1145
ZrmI	AGTACT	1 cut(s)	764
Zsp2I	ATGCAT	2 cut(s)	961, 1423

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.