Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb5

Orthogroup ID

OG0015624

Physical Location & Seq

Genomic Coordinates Reverse (-)

5575298 .. 5577608

Gene Structure 2311 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_5g09680.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 807 bp

ATGGATTCTGATATAATACCTGAGTTGGAGTCCAACAAAACCATGAAAGATGAAGCAGAACAAGCGGTAGCAAGGTTACATACAACTACAAGTAATGAGATGAAAAGCAGCACCCAAGAGACGGAGGAGATGAGAAGAATTCGTCAGATGAGAGTATTTGTTGAAAGGAAAGATGCCTTCTCCAAGGAAGTGGATGATCTGATGTTAAGAAGGTTCCTACGTGCTCGTGTTTTAGATGTGGAGCAGGCATCAGACATGTTCCTGAAATACTTGAAATGGAGACAATCATTTGCTCCTAATGGTTCAATTTCTGCTTCAGAAGTACCCAATCAAATTGCACAGAACAAGCTGTTTTCACAAGGTTCAGACAAGAGGGGATGTCCAATAGCAGTTCTACTAGGTGCTAGACACTTTCAAGTCAAAGGGGGCCTGAAGGAGTTTAAGCGTTATGTAGTCTATGCTTTCGACAAGTTATGTGCAAGGATGCCACCAGGACAGGAGAAGTTTATCTTCATAGGTGATCTGGAAGGTTGGGGATATTCAAACAGTGATATCCGAGCATACCTAGGAGCTCTCTCCATTTTGCAGGACTATTATCCAGAAAGACTAGGGAAGATGTTCATTGTTCATGTGCCTTTCGTGTTTATGACAGCATGGAAAATCGTTTGCCCTTTCATTGACAACAAAACTAAGGAGAAGATAGTATTTGTTGAGAACAAAATGCTGAAATCAACTCTGCTTGAAGAGATTGACGAAAGCCAACTTCCTGAAATATATGGAGGCAAACTACCACTGGTTCCTATTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

CRAL_TRIO CRAL_TRIO_N

Protein Analysis

269

Amino Acids

30.9

Weight (kDa)

8.29

Isoelectric Point (pI)

46.16

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
CRAL_TRIO	PF00650	115 - 261	3.3e-35	CRAL/TRIO domain
CRAL_TRIO_2	PF13716	126 - 261	1.1e-08	Divergent CRAL/TRIO domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0015624)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_5g09680
malus_domestica	MD06G1129400.v1.1 MD14G1146600.v1.1
prunus_persica	Prupe.5G140600_v2.0.a1
pyrus_communis	pycom06g12120 pycom14g12120
rosa_chinensis	RchiOBHm_Chr7g0188571
rosa_laevigata	RLG00000004683
rosa_multiflora	Rmu_sc0001576.1_g000012
rosa_roxburghii	Rroxscaffold_3G00266250
rosa_rugosa	Rorug06G0491300
rosa_samantha	Rh7AG096300 Rh7BG098000 Rh7CG099000 Rh7DG098300
rosa_wichuraiana	Rw7G008310

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	65
AcsI	RAATTY	1 cut(s)	138
AcuI	CTGAAG	2 cut(s)	300, 452
AfaI	GTAC	1 cut(s)	324
AfiI	CCNNNNNNNGG	1 cut(s)	121
AflIII	ACRYGT	1 cut(s)	255
AgsI	TTSAA	6 cut(s)	164, 274, 306, 416, 543, 743
AjnI	CCWGG	1 cut(s)	490
AluBI	AGCT	2 cut(s)	349, 572
AluI	AGCT	2 cut(s)	349, 572
Alw21I	GWGCWC	2 cut(s)	226, 574
Alw26I	GTCTC	2 cut(s)	113, 274
AoxI	GGCC	1 cut(s)	427
ApeKI	GCWGC	1 cut(s)	108
ApoI	RAATTY	1 cut(s)	138
Asp700I	GAANNNNTTC	1 cut(s)	617
AspA2I	CCTAGG	1 cut(s)	565
AspS9I	GGNCC	1 cut(s)	427
AsuHPI	GGTGA	1 cut(s)	530
AvrII	CCTAGG	1 cut(s)	565
BanII	GRGCYC	1 cut(s)	574
BauI	CACGAG	1 cut(s)	225
Bbv12I	GWGCWC	2 cut(s)	226, 574
BbvI	GCAGC	1 cut(s)	120
BciT130I	CCWGG	1 cut(s)	492
BcoDI	GTCTC	2 cut(s)	113, 274
BfaI	CTAG	4 cut(s)	398, 405, 566, 608
BisI	GCNGC	1 cut(s)	109
BlnI	CCTAGG	1 cut(s)	565
BlsI	GCNGC	1 cut(s)	110
Bme1390I	CCNGG	1 cut(s)	492
BmgT120I	GGNCC	1 cut(s)	427
BmiI	GGNNCC	3 cut(s)	215, 428, 798
BmrFI	CCNGG	1 cut(s)	492
BmsI	GCATC	3 cut(s)	163, 257, 474
BsaAI	YACGTR	1 cut(s)	221
BsaJI	CCNNGG	2 cut(s)	183, 565
Bsc4I	CCNNNNNNNGG	1 cut(s)	121
Bse1I	ACTGG	1 cut(s)	798
BseBI	CCWGG	1 cut(s)	492
BseDI	CCNNGG	2 cut(s)	183, 565
BseGI	GGATG	3 cut(s)	199, 383, 489
BseLI	CCNNNNNNNGG	1 cut(s)	121
BseMII	CTCAG	1 cut(s)	12
BseNI	ACTGG	1 cut(s)	798
BseRI	GAGGAG	1 cut(s)	140
BseXI	GCAGC	1 cut(s)	120
BshFI	GGCC	1 cut(s)	429
BsiHKAI	GWGCWC	2 cut(s)	226, 574
BslI	CCNNNNNNNGG	1 cut(s)	121
BsmAI	GTCTC	2 cut(s)	113, 274
BsmBI	CGTCTC	1 cut(s)	113
BsnI	GGCC	1 cut(s)	429
Bsp1286I	GDGCHC	2 cut(s)	226, 574
Bsp143I	GATC	2 cut(s)	196, 520
BspACI	CCGC	1 cut(s)	65
BspANI	GGCC	1 cut(s)	429
BspCNI	CTCAG	1 cut(s)	13
BspLI	GGNNCC	3 cut(s)	215, 428, 798
BsrI	ACTGG	1 cut(s)	798
BssECI	CCNNGG	2 cut(s)	183, 565
BssMI	GATC	2 cut(s)	196, 520
BssSI	CACGAG	1 cut(s)	225
BssT1I	CCWWGG	2 cut(s)	183, 565
Bst2BI	CACGAG	1 cut(s)	225
Bst2UI	CCWGG	1 cut(s)	492
Bst4CI	ACNGT	1 cut(s)	548
Bst6I	CTCTTC	1 cut(s)	738
BstBAI	YACGTR	1 cut(s)	221
BstC8I	GCNNGC	1 cut(s)	246
BstDEI	CTNAG	2 cut(s)	21, 690
BstF5I	GGATG	3 cut(s)	199, 383, 489
BstKTI	GATC	2 cut(s)	199, 523
BstMAI	GTCTC	2 cut(s)	113, 274
BstMBI	GATC	2 cut(s)	196, 520
BstMWI	GCNNNNNNNGC	1 cut(s)	62
BstNI	CCWGG	1 cut(s)	492
BstNSI	RCATGY	1 cut(s)	259
BstSCI	CCNGG	1 cut(s)	490
BstV1I	GCAGC	1 cut(s)	120
BstXI	CCANNNNNNTGG	1 cut(s)	190
BsuRI	GGCC	1 cut(s)	429
BtsCI	GGATG	3 cut(s)	199, 383, 489
BtsIMutI	CAGTG	2 cut(s)	553, 791
Cac8I	GCNNGC	1 cut(s)	246
Cfr13I	GGNCC	1 cut(s)	427
Csp6I	GTAC	1 cut(s)	323
CviAII	CATG	4 cut(s)	43, 256, 629, 654
CviJI	RGCY	4 cut(s)	349, 429, 572, 759
CviKI_1	RGCY	4 cut(s)	349, 429, 572, 759
CviQI	GTAC	1 cut(s)	323
DdeI	CTNAG	2 cut(s)	21, 690
DpnI	GATC	2 cut(s)	198, 522
DpnII	GATC	2 cut(s)	196, 520
Eam1104I	CTCTTC	1 cut(s)	738
EarI	CTCTTC	1 cut(s)	738
Ecl136II	GAGCTC	1 cut(s)	572
Eco130I	CCWWGG	2 cut(s)	183, 565
Eco24I	GRGCYC	1 cut(s)	574
Eco32I	GATATC	1 cut(s)	553
Eco53kI	GAGCTC	1 cut(s)	572
Eco57I	CTGAAG	2 cut(s)	300, 452
EcoICRI	GAGCTC	1 cut(s)	572
EcoO109I	RGGNCCY	1 cut(s)	427
EcoRI	GAATTC	1 cut(s)	138
EcoRII	CCWGG	1 cut(s)	490
EcoRV	GATATC	1 cut(s)	553
EcoT14I	CCWWGG	2 cut(s)	183, 565
EcoT38I	GRGCYC	1 cut(s)	574
ErhI	CCWWGG	2 cut(s)	183, 565
Esp3I	CGTCTC	1 cut(s)	113
FaeI	CATG	4 cut(s)	46, 259, 632, 657
FalI	AAGNNNNNCTT	2 cut(s)	494, 526
FatI	CATG	4 cut(s)	42, 255, 628, 653
Fnu4HI	GCNGC	1 cut(s)	109
FokI	GGATG	3 cut(s)	206, 390, 496
FriOI	GRGCYC	1 cut(s)	574
Fsp4HI	GCNGC	1 cut(s)	109
FspBI	CTAG	4 cut(s)	398, 405, 566, 608
GluI	GCNGC	1 cut(s)	109
HaeIII	GGCC	1 cut(s)	429
Hin1II	CATG	4 cut(s)	46, 259, 632, 657
HinfI	GANTC	2 cut(s)	5, 29
HphI	GGTGA	1 cut(s)	530
Hpy188I	TCNGA	7 cut(s)	10, 147, 201, 253, 319, 367, 557
Hpy188III	TCNNGA	4 cut(s)	262, 524, 599, 767
HpyAV	CCTTC	4 cut(s)	187, 204, 427, 521
HpyCH4III	ACNGT	1 cut(s)	548
HpyCH4IV	ACGT	1 cut(s)	220
HpyCH4V	TGCA	3 cut(s)	338, 479, 586
HpyF10VI	GCNNNNNNNGC	1 cut(s)	62
HpyF3I	CTNAG	2 cut(s)	21, 690
HpySE526I	ACGT	1 cut(s)	220
Hsp92II	CATG	4 cut(s)	46, 259, 632, 657
Kzo9I	GATC	2 cut(s)	196, 520
LmnI	GCTCC	3 cut(s)	241, 298, 569
Lsp1109I	GCAGC	1 cut(s)	120
LweI	GCATC	3 cut(s)	163, 257, 474
MaeI	CTAG	4 cut(s)	398, 405, 566, 608
MaeII	ACGT	1 cut(s)	220
MaeIII	GTNAC	1 cut(s)	75
MalI	GATC	2 cut(s)	198, 522
MboI	GATC	2 cut(s)	196, 520
MboII	GAAGA	5 cut(s)	147, 502, 625, 709, 755
MhlI	GDGCHC	2 cut(s)	226, 574
MluCI	AATT	3 cut(s)	138, 306, 333
MlyI	GAGTC	1 cut(s)	38
MmeI	TCCRAC	2 cut(s)	6, 57
MnlI	CCTC	3 cut(s)	118, 366, 773
MroXI	GAANNNNTTC	1 cut(s)	617
MseI	TTAA	2 cut(s)	206, 441
MspR9I	CCNGG	1 cut(s)	492
MvaI	CCWGG	1 cut(s)	492
MwoI	GCNNNNNNNGC	1 cut(s)	62
NdeII	GATC	2 cut(s)	196, 520
NlaIII	CATG	4 cut(s)	46, 259, 632, 657
NlaIV	GGNNCC	3 cut(s)	215, 428, 798
NspI	RCATGY	1 cut(s)	259
PciI	ACATGT	1 cut(s)	255
PdmI	GAANNNNTTC	1 cut(s)	617
PfeI	GAWTC	1 cut(s)	5
PkrI	GCNGC	1 cut(s)	110
PleI	GAGTC	1 cut(s)	37
PpsI	GAGTC	1 cut(s)	37
Ppu21I	YACGTR	1 cut(s)	221
PscI	ACATGT	1 cut(s)	255
Psp124BI	GAGCTC	1 cut(s)	574
Psp6I	CCWGG	1 cut(s)	490
PspGI	CCWGG	1 cut(s)	490
PspN4I	GGNNCC	3 cut(s)	215, 428, 798
PspPI	GGNCC	1 cut(s)	427
RsaI	GTAC	1 cut(s)	324
RsaNI	GTAC	1 cut(s)	323
SacI	GAGCTC	1 cut(s)	574
SaqAI	TTAA	2 cut(s)	206, 441
SatI	GCNGC	1 cut(s)	109
Sau3AI	GATC	2 cut(s)	196, 520
Sau96I	GGNCC	1 cut(s)	427
SchI	GAGTC	1 cut(s)	38
ScrFI	CCNGG	1 cut(s)	492
SduI	GDGCHC	2 cut(s)	226, 574
SfaNI	GCATC	3 cut(s)	163, 257, 474
Sse9I	AATT	3 cut(s)	138, 306, 333
SsiI	CCGC	1 cut(s)	65
SspMI	CTAG	4 cut(s)	398, 405, 566, 608
SstI	GAGCTC	1 cut(s)	574
StyD4I	CCNGG	1 cut(s)	490
StyI	CCWWGG	2 cut(s)	183, 565
TaaI	ACNGT	1 cut(s)	548
TaiI	ACGT	1 cut(s)	223
TaqI	TCGA	1 cut(s)	465
TasI	AATT	3 cut(s)	138, 306, 333
TfiI	GAWTC	1 cut(s)	5
Tru1I	TTAA	2 cut(s)	206, 441
Tru9I	TTAA	2 cut(s)	206, 441
TscAI	CASTG	2 cut(s)	553, 798
TseI	GCWGC	1 cut(s)	108
TspDTI	ATGAA	7 cut(s)	59, 66, 116, 502, 610, 617, 664
TspGWI	ACGGA	1 cut(s)	137
TspRI	CASTG	2 cut(s)	553, 798
XapI	RAATTY	1 cut(s)	138
XceI	RCATGY	1 cut(s)	259
XmaJI	CCTAGG	1 cut(s)	565
XmnI	GAANNNNTTC	1 cut(s)	617
XspI	CTAG	4 cut(s)	398, 405, 566, 608

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.