Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb5

Orthogroup ID

OG0009328

Physical Location & Seq

Genomic Coordinates Forward (+)

6192541 .. 6196865

Gene Structure 4325 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_5g10940.t3

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1497 bp

ATGGGAAGTCTTAAATCACCCTGGTCGCGAAGGAGGAAAAAACATGCACTTCTACCTAAACAATGGAAAAGTTTCTTTACACCAGAAGGGAAGCTCACTGATGGGGGTGTCAAGTTCTTAAAAAAAGTTCGCAGTGGAGGTGTTGATCCGAGTCTACGACCTGAAGTGTGGCCTTTCCTCCTTGGAGTCTATGACGTGAACAGTTCAAAGGAAGAAAGAGAATCTGTAAAAAATCAGAAAAGAAGAGAATATGAGGACTTGCGGAGACAATGCCGGAAACTTTTAACACAAAGTGAAAAGAGTTTTAAGTTAAAGGAAACTTCTGAAAACAGTAGCAATGAGGGCAGTGGGGATTTTAGTCAAATTGTAGATTCCACTGGCCAAGGGGATGTTACAAGTTCCCTGAGATCATTTTCAACTGAGGCAGGAAGCAAATTGCCCGAGGATACAAAAGATGCTGCCAGCCATCAAGCTGTTCAGACGTCTGAATCATGCGAAGGAGATGGTGAGAAGAGTGGAGTCACCTGTGAAGATGCCTCTGCCGGTGACTCAGAATCAACTGATTCTGATTCCTCTGAAGATGCTGATATCACTCGACCTTTACTTACTACTGAAGGAACTGAAGAGAATAATGTTGACGACAAGGCTACGGAAAACTCATCCGTTGCCAATGCAGAAAACAGGCACAAAACCCACACAGCAGAAGATTATGCCACATGGCAGAGAATAATCCGCCTCGATGCTGTGCGTGCAAATGATGAATGGATAATATATTCACCCACTCAGGCTGATGTCTCAGAGATCAAGGCACATCGATTAGCTGAGAGTGTTGGGATGAAGGATTATGAACACTTGGAGCCATGCAGGATTTTTCATGCTGCTCGCCTGGTTGCCATCCTGGAAGCCTATGCTCTGTATGATCCTGAAATTGGTTACTGCCAAGGGATGAGTGACCTACTTACTCCTATCATCTCAGTCATGGAAGAGGACGATGAAGCCTTCTGGTGCTTTGTGGGTTTTATGAAGAAGGCTCGGCATAACTTCCGGCTTGATGAGGCTGGGATTCGGAGGCAGCTTGGCATTATCTCAAAGATTATCAAGGGCAAAGATGTTACTCTCTATAGACACCTGGAGAAGCTTCAAGCAGAGGATTGCTTTTTTGTGTACAGAATGGTAGTGGTTCTCTTCAGGCGGGAGTTGAGCTTTGAGCAGACACTTTGCCTCTGGGAGGTAATCTGGGCAGATCAGGCAGCAATCAGGGCGGGAATTGCCAAGTCTGCTTGGGGGAGGATGAGGCTGAGAGCCCCGCCCACTGACGATCTCTTGTTGTATGCAATAGCAGCTTGTGTGCTGCAGCGAAGGAAGCTGATAGTAGAGAAGTACAGCAGCATGGAAGAGATCATGAGGGAGTGCAATAGCATGGCTGGCTGTCTGGATGTTTGGAAGCTTTTAGATGATGCTCATGATTTGGTGGTATCCCTTCATGACAAGATTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko04137 map04137

Pfam Domains

Protein Families

RabGAP-TBC

Protein Analysis

499

Amino Acids

56.35

Weight (kDa)

5.45

Isoelectric Point (pI)

46.35

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
RabGAP-TBC	PF00566	355 - 481	5.7e-30	Rab-GTPase-TBC domain
RabGap-TBC_2	PF23436	355 - 474	2.2e-15	RabGAP TBC domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0009328)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G41940
fragaria_vesca	FvH4_5g10940 FvH4_5g10940 FvH4_5g10940
malus_domestica	MD14G1126300.v1.1
prunus_persica	Prupe.5G129300_v2.0.a1 Prupe.5G129300_v2.0.a1 Prupe.5G129300_v2.0.a1 Prupe.5G129300_v2.0.a1 Prupe.5G129300_v2.0.a1
rosa_chinensis	RchiOBHm_Chr7g0186871
rosa_laevigata	RLG00000004808
rosa_multiflora	Rmu_ssc0000024.1_g000031
rosa_roxburghii	Rroxscaffold_3G00267750
rosa_rugosa	Rorug06G0477600 Rorug06G0477700 Rorug06G0477800
rosa_samantha	Rh7AG083400 Rh7BG079400 Rh7CG084400 Rh7DG085300
rosa_wichuraiana	Rw7G007340

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	485
AccI	GTMKAC	1 cut(s)	154
AccII	CGCG	1 cut(s)	28
AciI	CCGC	5 cut(s)	262, 733, 1192, 1262, 1307
AclWI	GGATC	2 cut(s)	140, 914
AcoI	YGGCCR	1 cut(s)	379
AcuI	CTGAAG	5 cut(s)	183, 597, 633, 642, 1171
AcyI	GRCGYC	1 cut(s)	482
AdeI	CACNNNGTG	1 cut(s)	293
AfaI	GTAC	2 cut(s)	1166, 1382
AfiI	CCNNNNNNNGG	2 cut(s)	929, 1228
AgsI	TTSAA	3 cut(s)	207, 417, 1142
AjiI	CACGTC	1 cut(s)	196
AjnI	CCWGG	4 cut(s)	20, 885, 897, 1128
AluBI	AGCT	9 cut(s)	94, 473, 821, 1075, 1138, 1203, 1343, 1366, 1447
AluI	AGCT	9 cut(s)	94, 473, 821, 1075, 1138, 1203, 1343, 1366, 1447
Alw26I	GTCTC	2 cut(s)	259, 799
AlwI	GGATC	2 cut(s)	140, 914
Ama87I	CYCGRG	1 cut(s)	440
AoxI	GGCC	2 cut(s)	170, 379
ApeKI	GCWGC	8 cut(s)	458, 878, 1072, 1250, 1340, 1351, 1354, 1386
Asp700I	GAANNNNTTC	1 cut(s)	71
AsuHPI	GGTGA	5 cut(s)	9, 514, 518, 557, 768
AvaI	CYCGRG	1 cut(s)	440
BalI	TGGCCA	1 cut(s)	381
BanII	GRGCYC	1 cut(s)	1306
BbvI	GCAGC	8 cut(s)	445, 865, 1084, 1262, 1338, 1352, 1366, 1398
BccI	CCATC	4 cut(s)	95, 474, 497, 902
BciT130I	CCWGG	4 cut(s)	22, 887, 899, 1130
BciVI	GTATCC	2 cut(s)	439, 1486
BcoDI	GTCTC	2 cut(s)	259, 799
BfmI	CTRYAG	2 cut(s)	1120, 1352
BfuI	GTATCC	2 cut(s)	439, 1486
BisI	GCNGC	8 cut(s)	459, 879, 1073, 1251, 1341, 1352, 1355, 1387
BlsI	GCNGC	8 cut(s)	460, 880, 1074, 1252, 1342, 1353, 1356, 1388
Bme1390I	CCNGG	4 cut(s)	22, 887, 899, 1130
BmeT110I	CYCGRG	1 cut(s)	440
BmgBI	CACGTC	1 cut(s)	196
BmiI	GGNNCC	1 cut(s)	858
BmrFI	CCNGG	4 cut(s)	22, 887, 899, 1130
BmsI	GCATC	5 cut(s)	445, 523, 571, 730, 1447
BpmI	CTGGAG	1 cut(s)	1151
Bsa29I	ATCGAT	1 cut(s)	814
BsaHI	GRCGYC	1 cut(s)	482
BsaJI	CCNNGG	5 cut(s)	20, 181, 382, 441, 940
Bsc4I	CCNNNNNNNGG	2 cut(s)	929, 1228
Bse118I	RCCGGY	1 cut(s)	542
Bse1I	ACTGG	1 cut(s)	382
Bse3DI	GCAATG	1 cut(s)	343
BseBI	CCWGG	4 cut(s)	22, 887, 899, 1130
BseCI	ATCGAT	1 cut(s)	814
BseDI	CCNNGG	5 cut(s)	20, 181, 382, 441, 940
BseGI	GGATG	7 cut(s)	394, 659, 840, 894, 951, 1296, 1441
BseLI	CCNNNNNNNGG	2 cut(s)	929, 1228
BseMI	GCAATG	1 cut(s)	343
BseMII	CTCAG	8 cut(s)	395, 411, 564, 797, 810, 813, 987, 1289
BseNI	ACTGG	1 cut(s)	382
BseXI	GCAGC	8 cut(s)	445, 865, 1084, 1262, 1338, 1352, 1366, 1398
BseYI	CCCAGC	1 cut(s)	1058
Bsh1236I	CGCG	1 cut(s)	28
BshFI	GGCC	2 cut(s)	172, 381
BshVI	ATCGAT	1 cut(s)	814
BsiHKCI	CYCGRG	1 cut(s)	440
BsiSI	CCGG	3 cut(s)	274, 543, 1045
BslI	CCNNNNNNNGG	2 cut(s)	929, 1228
BsmAI	GTCTC	2 cut(s)	259, 799
BsnI	GGCC	2 cut(s)	172, 381
BsoBI	CYCGRG	1 cut(s)	440
Bsp1286I	GDGCHC	1 cut(s)	1306
Bsp1407I	TGTACA	1 cut(s)	1164
Bsp143I	GATC	7 cut(s)	145, 407, 801, 919, 1243, 1318, 1398
Bsp68I	TCGCGA	1 cut(s)	28
BspACI	CCGC	5 cut(s)	262, 733, 1192, 1262, 1307
BspANI	GGCC	2 cut(s)	172, 381
BspCNI	CTCAG	8 cut(s)	396, 412, 563, 796, 809, 814, 986, 1290
BspDI	ATCGAT	1 cut(s)	814
BspFNI	CGCG	1 cut(s)	28
BspHI	TCATGA	3 cut(s)	1401, 1462, 1483
BspLI	GGNNCC	1 cut(s)	858
BspMAI	CTGCAG	1 cut(s)	1356
BspPI	GGATC	2 cut(s)	140, 914
BsrDI	GCAATG	1 cut(s)	343
BsrFI	RCCGGY	1 cut(s)	542
BsrGI	TGTACA	1 cut(s)	1164
BsrI	ACTGG	1 cut(s)	382
BssAI	RCCGGY	1 cut(s)	542
BssECI	CCNNGG	5 cut(s)	20, 181, 382, 441, 940
BssMI	GATC	7 cut(s)	145, 407, 801, 919, 1243, 1318, 1398
BssNI	GRCGYC	1 cut(s)	482
BssT1I	CCWWGG	3 cut(s)	181, 382, 940
Bst2UI	CCWGG	4 cut(s)	22, 887, 899, 1130
Bst4CI	ACNGT	2 cut(s)	203, 332
Bst6I	CTCTTC	6 cut(s)	238, 506, 618, 978, 1190, 1389
BstACI	GRCGYC	1 cut(s)	482
BstAUI	TGTACA	1 cut(s)	1164
BstC8I	GCNNGC	4 cut(s)	463, 750, 883, 1426
BstDEI	CTNAG	8 cut(s)	404, 420, 550, 783, 796, 822, 973, 1298
BstENI	CCTNNNNNAGG	1 cut(s)	1226
BstF5I	GGATG	7 cut(s)	394, 659, 840, 894, 951, 1296, 1441
BstFNI	CGCG	1 cut(s)	28
BstKTI	GATC	7 cut(s)	148, 410, 804, 922, 1246, 1321, 1401
BstMAI	GTCTC	2 cut(s)	259, 799
BstMBI	GATC	7 cut(s)	145, 407, 801, 919, 1243, 1318, 1398
BstMWI	GCNNNNNNNGC	9 cut(s)	342, 749, 1247, 1259, 1268, 1277, 1340, 1363, 1425
BstNI	CCWGG	4 cut(s)	22, 887, 899, 1130
BstNSI	RCATGY	1 cut(s)	47
BstSCI	CCNGG	4 cut(s)	20, 885, 897, 1128
BstSFI	CTRYAG	2 cut(s)	1120, 1352
BstUI	CGCG	1 cut(s)	28
BstV1I	GCAGC	8 cut(s)	445, 865, 1084, 1262, 1338, 1352, 1366, 1398
Bsu15I	ATCGAT	1 cut(s)	814
BsuI	GTATCC	2 cut(s)	439, 1486
BsuRI	GGCC	2 cut(s)	172, 381
BsuTUI	ATCGAT	1 cut(s)	814
BtrI	CACGTC	1 cut(s)	196
BtsCI	GGATG	7 cut(s)	394, 659, 840, 894, 951, 1296, 1441
BtsI	GCAGTG	2 cut(s)	139, 352
BtsIMutI	CAGTG	5 cut(s)	96, 139, 352, 375, 1311
BtuMI	TCGCGA	1 cut(s)	28
Cac8I	GCNNGC	4 cut(s)	463, 750, 883, 1426
CciI	TCATGA	3 cut(s)	1401, 1462, 1483
Cfr10I	RCCGGY	1 cut(s)	542
ClaI	ATCGAT	1 cut(s)	814
Csp6I	GTAC	2 cut(s)	1165, 1381
CviQI	GTAC	2 cut(s)	1165, 1381
DdeI	CTNAG	8 cut(s)	404, 420, 550, 783, 796, 822, 973, 1298
DpnI	GATC	7 cut(s)	147, 409, 803, 921, 1245, 1320, 1400
DpnII	GATC	7 cut(s)	145, 407, 801, 919, 1243, 1318, 1398
DraIII	CACNNNGTG	1 cut(s)	293
EaeI	YGGCCR	1 cut(s)	379
Eam1104I	CTCTTC	6 cut(s)	238, 506, 618, 978, 1190, 1389
EarI	CTCTTC	6 cut(s)	238, 506, 618, 978, 1190, 1389
EciI	GGCGGA	1 cut(s)	722
Eco130I	CCWWGG	3 cut(s)	181, 382, 940
Eco24I	GRGCYC	1 cut(s)	1306
Eco32I	GATATC	1 cut(s)	589
Eco57I	CTGAAG	5 cut(s)	183, 597, 633, 642, 1171
Eco88I	CYCGRG	1 cut(s)	440
EcoNI	CCTNNNNNAGG	1 cut(s)	1226
EcoRII	CCWGG	4 cut(s)	20, 885, 897, 1128
EcoRV	GATATC	1 cut(s)	589
EcoT14I	CCWWGG	3 cut(s)	181, 382, 940
EcoT38I	GRGCYC	1 cut(s)	1306
ErhI	CCWWGG	3 cut(s)	181, 382, 940
FauI	CCCGC	3 cut(s)	1185, 1255, 1314
FblI	GTMKAC	1 cut(s)	154
Fnu4HI	GCNGC	8 cut(s)	459, 879, 1073, 1251, 1341, 1352, 1355, 1387
FokI	GGATG	7 cut(s)	401, 646, 847, 881, 958, 1303, 1448
FriOI	GRGCYC	1 cut(s)	1306
Fsp4HI	GCNGC	8 cut(s)	459, 879, 1073, 1251, 1341, 1352, 1355, 1387
GluI	GCNGC	8 cut(s)	459, 879, 1073, 1251, 1341, 1352, 1355, 1387
GsaI	CCCAGC	1 cut(s)	1062
GsuI	CTGGAG	1 cut(s)	1151
HaeIII	GGCC	2 cut(s)	172, 381
HapII	CCGG	3 cut(s)	274, 543, 1045
Hin1I	GRCGYC	1 cut(s)	482
HincII	GTYRAC	1 cut(s)	637
HindII	GTYRAC	1 cut(s)	637
HindIII	AAGCTT	2 cut(s)	1136, 1445
HpaII	CCGG	3 cut(s)	274, 543, 1045
HphI	GGTGA	5 cut(s)	9, 514, 518, 557, 768
Hpy166II	GTNNAC	4 cut(s)	155, 199, 637, 1165
Hpy188III	TCNNGA	6 cut(s)	27, 923, 1402, 1433, 1463, 1484
Hpy8I	GTNNAC	4 cut(s)	155, 199, 637, 1165
HpyAV	CCTTC	9 cut(s)	24, 80, 491, 608, 832, 1009, 1021, 1353, 1490
HpyCH4III	ACNGT	2 cut(s)	203, 332
HpyCH4IV	ACGT	2 cut(s)	195, 482
HpyCH4V	TGCA	7 cut(s)	47, 674, 752, 864, 1334, 1354, 1413
HpyF10VI	GCNNNNNNNGC	9 cut(s)	342, 749, 1247, 1259, 1268, 1277, 1340, 1363, 1425
HpyF3I	CTNAG	8 cut(s)	404, 420, 550, 783, 796, 822, 973, 1298
HpySE526I	ACGT	2 cut(s)	195, 482
Hsp92I	GRCGYC	1 cut(s)	482
Kzo9I	GATC	7 cut(s)	145, 407, 801, 919, 1243, 1318, 1398
LmnI	GCTCC	1 cut(s)	856
Lsp1109I	GCAGC	8 cut(s)	445, 865, 1084, 1262, 1338, 1352, 1366, 1398
LweI	GCATC	5 cut(s)	445, 523, 571, 730, 1447
MaeII	ACGT	2 cut(s)	195, 482
MaeIII	GTNAC	6 cut(s)	391, 520, 545, 932, 950, 1111
MalI	GATC	7 cut(s)	147, 409, 803, 921, 1245, 1320, 1400
MboI	GATC	7 cut(s)	145, 407, 801, 919, 1243, 1318, 1398
MhlI	GDGCHC	1 cut(s)	1306
MlsI	TGGCCA	1 cut(s)	381
MluCI	AATT	4 cut(s)	363, 434, 927, 1266
MluNI	TGGCCA	1 cut(s)	381
MlyI	GAGTC	4 cut(s)	160, 195, 528, 542
Mox20I	TGGCCA	1 cut(s)	381
MroXI	GAANNNNTTC	1 cut(s)	71
MscI	TGGCCA	1 cut(s)	381
MseI	TTAA	5 cut(s)	12, 119, 284, 306, 311
Msp20I	TGGCCA	1 cut(s)	381
MspI	CCGG	3 cut(s)	274, 543, 1045
MspR9I	CCNGG	4 cut(s)	22, 887, 899, 1130
MvaI	CCWGG	4 cut(s)	22, 887, 899, 1130
MvnI	CGCG	1 cut(s)	28
MwoI	GCNNNNNNNGC	9 cut(s)	342, 749, 1247, 1259, 1268, 1277, 1340, 1363, 1425
NdeII	GATC	7 cut(s)	145, 407, 801, 919, 1243, 1318, 1398
NlaIV	GGNNCC	1 cut(s)	858
NmeAIII	GCCGAG	1 cut(s)	1012
NmuCI	GTSAC	3 cut(s)	520, 545, 950
NruI	TCGCGA	1 cut(s)	28
NspI	RCATGY	1 cut(s)	47
PagI	TCATGA	3 cut(s)	1401, 1462, 1483
PdmI	GAANNNNTTC	1 cut(s)	71
PfeI	GAWTC	7 cut(s)	221, 371, 488, 554, 563, 569, 1063
PfoI	TCCNGGA	1 cut(s)	897
PkrI	GCNGC	8 cut(s)	460, 880, 1074, 1252, 1342, 1353, 1356, 1388
PleI	GAGTC	4 cut(s)	159, 194, 527, 542
PpsI	GAGTC	4 cut(s)	159, 194, 527, 542
Psp6I	CCWGG	4 cut(s)	20, 885, 897, 1128
PspFI	CCCAGC	1 cut(s)	1058
PspGI	CCWGG	4 cut(s)	20, 885, 897, 1128
PspN4I	GGNNCC	1 cut(s)	858
PstI	CTGCAG	1 cut(s)	1356
RruI	TCGCGA	1 cut(s)	28
RsaI	GTAC	2 cut(s)	1166, 1382
RsaNI	GTAC	2 cut(s)	1165, 1381
SaqAI	TTAA	5 cut(s)	12, 119, 284, 306, 311
SatI	GCNGC	8 cut(s)	459, 879, 1073, 1251, 1341, 1352, 1355, 1387
Sau3AI	GATC	7 cut(s)	145, 407, 801, 919, 1243, 1318, 1398
SchI	GAGTC	4 cut(s)	160, 195, 528, 542
ScrFI	CCNGG	4 cut(s)	22, 887, 899, 1130
SduI	GDGCHC	1 cut(s)	1306
SfaNI	GCATC	5 cut(s)	445, 523, 571, 730, 1447
SfcI	CTRYAG	2 cut(s)	1120, 1352
Sse9I	AATT	4 cut(s)	363, 434, 927, 1266
SsiI	CCGC	5 cut(s)	262, 733, 1192, 1262, 1307
StyD4I	CCNGG	4 cut(s)	20, 885, 897, 1128
StyI	CCWWGG	3 cut(s)	181, 382, 940
TaaI	ACNGT	2 cut(s)	203, 332
TaiI	ACGT	2 cut(s)	198, 485
TaqI	TCGA	3 cut(s)	595, 738, 814
TasI	AATT	4 cut(s)	363, 434, 927, 1266
TatI	WGTACW	2 cut(s)	1164, 1380
TfiI	GAWTC	7 cut(s)	221, 371, 488, 554, 563, 569, 1063
Tru1I	TTAA	5 cut(s)	12, 119, 284, 306, 311
Tru9I	TTAA	5 cut(s)	12, 119, 284, 306, 311
TscAI	CASTG	5 cut(s)	103, 139, 352, 382, 1318
TseFI	GTSAC	3 cut(s)	520, 545, 950
TseI	GCWGC	8 cut(s)	458, 878, 1072, 1250, 1340, 1351, 1354, 1386
Tsp45I	GTSAC	3 cut(s)	520, 545, 950
TspDTI	ATGAA	7 cut(s)	774, 851, 861, 863, 1008, 1037, 1472
TspGWI	ACGGA	2 cut(s)	652, 665
TspRI	CASTG	5 cut(s)	103, 139, 352, 382, 1318
XagI	CCTNNNNNAGG	1 cut(s)	1226
XceI	RCATGY	1 cut(s)	47
XmiI	GTMKAC	1 cut(s)	154
XmnI	GAANNNNTTC	1 cut(s)	71
ZraI	GACGTC	1 cut(s)	483

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.